Implement RDKit and Postgres in Django - django

I started to use rdkit and try to implement in Django with postgres. So I installed rdkit in my django virtualenv with pip install rdkit-pypi and also installed django-rdkit(https://github.com/rdkit/django-rdkit). This command: python3 -c "from rdkit import Chem; print(Chem.MolToMolBlock(Chem.MolFromSmiles('C1CCC1')))" works fine to me. But when I run migrate, it failed. The error is :
django.db.utils.OperationalError: could not open extension control file "/usr/share/postgresql/12/extension/rdkit.control": No such file or directory
It seems failed to create cartridge rdkit with postgres.
Anyone can help me find the problem and solution (better not with Conda, cause I never use it before)? Thank you very much!

OK I will answer by myself and close this question since the project is running well. I have to use conda and used conda-forge to create an rdkit extension for postgres can solve this problem.
To create Rdkit-postgres cartridge just run:
conda create -n environment
(environment) $ conda activate rdkit-postgres
(environment) $ conda install -c conda-forge postgresql
(environment) $ conda install -c rdkit rdkit-postgresql
To create django with rdkit need install django-rdkit(https://github.com/rdkit/django-rdkit).
need to mention a bit difference is that I created the extension in database manually not by django-rdkit automatically due to some permission denied in case someone comes across the same situation.

Related

Is there any other option to connect to snowflake

0 I'm a newbie to snowflake and trying to connect to the db using python but when executing the code i get this error "snowflake.connector.errors.ProgrammingError: 251005: Password is empty"
Pre steps: Install Snowflake Python connector using pip command or conda installer
are easiest as the package is installed along with dependent packages.
pip command: pip install snowflake-connector-python
conda installer command: conda install -c conda-forge snowflake-connector-python
Refer Snowflake official documentation for more details
https://docs.snowflake.com/en/user-guide/python-connector-install.html
Setting Snowflake Session Parameters -
https://docs.snowflake.com/en/user-guide/python-connector-example.html
Above link can be referred for supplying Passwords to the Python program using different ways.

No module named 'channels'

I am trying to install channels, following their tutorial(channels tutorial) but when I try to run the server I get the error: No module named 'channels'.
I have tried reinstalling it, moving the app to the top of the list of "INSTALLED_APPS" but it still does not work.
I have installed python 3.7 and django 2.1.3
There is no need to reinstall the python Or django. You just forgot to install channels. Follow Channel 2.1.7 installation
Try python -m pip install -U channels
this will fix your issue.
It seems the problem was it conflicted with another library, probably whitenoise. I created a new clear env and it works fine now.
I have also getting this issue:
you need to run python -m pip install -U channels. This might solve the issue.

Can't find any modules in Django project

I've been following a Django tutorial and initially created virtualenv and a requirements file in it. Project was halfway and in working state. Today I activated virtualenv successfully and tried python manage.py runserver to get error
ImportError: Couldn't import Django. Are you sure it's installed and available on your PYTHONPATH environment variable? Did you forget to activate a virtual environment?
I realized it's not finding Django and just to be sure checked my requirements.txt file (which confirmed right Django version). Tried to reinstall it from the file using pip3 install -r requirements.txt (tried using just pip too) to get another error --
ModuleNotFoundError: No module named 'pip'
It seems the environment is unable to find any of the modules. I tried to reinstall pip also just to be sure, but then it couldn't find apt-get command.
OS: Mac OSX El Capitan 10.11.6
Python: 3.6.2
Django: 1.10.3 (in requirements file)
Try running python -m ensurepip (or python3 -m ensurepip) to see if pip is already installed:
In most cases, end users of Python shouldn’t need to invoke this module directly (as pip should be bootstrapped by default), but it may be needed if installing pip was skipped when installing Python (or when creating a virtual environment) or after explicitly uninstalling pip.

ImportError: Couldn't import Django

I've already configured virtualenv in pycharm, when using the python manage.py command, this is error shown:
E:\video course\Python\code\web_worker\MxOnline>python manage.py runserver
Traceback (most recent call last):
File "manage.py", line 17, in <module>
"Couldn't import Django. Are you sure it's installed and "
ImportError: Couldn't import Django. Are you sure it's installed and available on your PYTHONPATH environment variable? Did you forget to activate a virtual environment?
How should I fix it, I've installed django.
I think the best way to use django is with virtualenv it's safe and you can install many apps in virtualenv which does not affect any outer space of the system
vitualenv uses the default version of python which is same as in your system
to install virtualenv
sudo pip install virtualenv
or for python3
sudo pip3 install virtualenv
and then in your dir
mkdir ~/newproject
cd ~/newproject
Now, create a virtual environment within the project directory by typing
virtualenv newenv
To install packages into the isolated environment, you must activate it by typing:
source newenv/bin/activate
now install here with
pip install django
You can verify the installation by typing:
django-admin --version
To leave your virtual environment, you need to issue the deactivate command from anywhere on the system:
deactivate
When you install Django on your computer all things go fine but when you install a Virtual environment it gets separated from all things. You will know it's importance when you will make a final project and deploy it to any cloud or hosting.
Just reinstall Django in the virtual environment and baam:
pip install Django
and then just run the command for testing:
python manage.py runsever
and you are all done.
You need to install Django, this error is giving because django is not installed.
pip install django
You need to use both commands:
pip install django and pip3 install django
that worked for me
Check that you have installed Django; by executing import django in python.
you mustn't see ModuleNotFoundError if everything's ok.
Check that you have installed virtualenv; by executing virtualenv --version.
you must see the version number if everything's ok.
Check that you have enabled virtualenv; there's got to be the name of your virtualenv in your command prompt starting line. enable it by
source bin/activate. also, remember to deactivate it every time your job is
finished with the virtualenv.
Check that your virtualenv includes django. a virtualenv by default
has no modules installed. you either have to install django in your
virtualenv (even if you have it in your machine already) or use
virtualenv --system-site-packages when creating a virtualenv to
include system site packages in the virtualenv.
Add django to your path. open python, import django, then run
django to see django's path. then add it to your ~/.bashrc (or
~/.zshrc if you're using zsh). more info in here
Install django-admin by running pip install django-admin
find your django parent dir path and add it to PYTHONPATH
In my case, my django parent dir path is /Library/Python/3.7/site-packages,add this line into ~/.bash_profile
export PYTHONPATH=/Library/Python/3.7/site-packages
else if you have PYTHONPATH already, just append it like this
export PYTHONPATH=${PYTHONPATH}:/Library/Python/3.7/site-packages
then
source ~/.bash_profile
I was having great difficulties with this but I have solved my issue. I am on Windows 10 using Vagrant ssh in my virtualenv environment, the box I have installed is ubuntu/xenial64, Django version 2.1, python==3.6.
When I was installing packages I was using pip3 but most importantly I was using sudo and the -H flag to install these packages. When I ran sudo pip3 freeze my packages would come up, but when I ran a plain pip3 freeze there would be no packages.
Then I tried the python3 manage.py startapp <YOUR APP NAME> and it did not work same error as you.
I finally thought to try sudo python3 manage.py startapp <YOUR APP NAME> it finally worked!
Hope this was help :)
I faced the same issue, and in my case it was because I had multiple python versions on my machine, in addition to the Anaconda ones.
In my case django didn't worked well with my anaconda python.
I knew that when I run import django on each python terminal for all versions I have.
As a summary here are the steps I made to get this solved:
Run the CMD as Admin
Create a project folder.
Create a new ENV for this new project INSIDE THE PROJECT Folder...
pip install virtualenv >> virtualenv new_env`
Activate it:
.\new_env\Scripts\activate`
After the env activation ⇒ Install Django:
python -m pip install Django
The python version you used here in step 5 will determine which python will to work with this installed Django.
If you are working on a machine where it doesn't have permissions to all the files and moreover you have two versions such as default 2.7 & latest 3.6 then while running the command use the python version with the command. If the latest python is installed with sudo then run the command with sudo.
exp:
sudo python3.6 manage.py runserver
after activating virtual env that error raises up on ubuntu.
and I solve this issue just by typing again :
pip3 install Django
inside the directory which is I want to create a new app.
You can use python3 to run file, if you don't want to use virtualenv.python3 manage.py runserver
To install python3 look at this page
Make sure you have Django installed by writing this command :
python -m django --version
if it's not installed you can install it by writing this command :
pip install django
I solved this problem in a completely different way.
Package installer = Conda (Miniconda)
List of available envs = base, djenv(Django environment created for keeping project related modules).
When I was using the command line to activate the djenv using conda activate djenv, the base environment was already activated. I did not notice that and when djenv was activated, (djenv) was being displayed at the beginning of the prompt on the command line. When i tired executing , python manage.py migrate, this happened.
ImportError: Couldn't import Django. Are you sure it's installed and available on your PYTHONPATH environment variable? Did you forget to activate a virtual environment?
I deactivated the current environment, i.e conda deactivate. This deactivated djenv. Then, i deactivated the base environment.
After that, I again activated djenv. And the command worked like a charm!!
If someone is facing a similar issue, I hope you should consider trying this as well. Maybe it helps.
Instead of creating a new virtual environment, you just have to access to your initially created virtual environment when you started the project.
You just have to do the following in your command line:
1)pipenv shell to access the backend virtual environment that you have initially created.
2) Then, python manage.py runserver
Let me know if it works for you or not.
To create a virtual environment for your project, open a new command prompt, navigate to the folder where you want to create your project and then enter the following:
py -m venv project-name
This will create a folder called ‘project-name’ if it does not already exist and setup the virtual environment. To activate the environment, run:
project-name\Scripts\activate.bat**
The virtual environment will be activated and you’ll see “(project-name)” next to the command prompt to designate that. Each time you start a new command prompt, you’ll need to activate the environment again.
Install Django
Django can be installed easily using pip within your virtual environment.
In the command prompt, ensure your virtual environment is active, and execute the following command:
py -m pip install Django
In case you have virtual env activated, django installed, django-admin --version prints the valid version - check if there is no circular import in the file you are executing.
I faced the same problem when I was doing it on windows 10. The problem could be that the path is not defined for manage.py in the environment variables. I did the following steps and it worked out for me!
Go to Start menu and search for manage.py.
Right click on it and select "copy full path".
Go to your "My Computer" or "This PC".
Right click and select "Properties".
Select Advanced settings.
Select "Environment Variables."
In the lower window, find "Path", click on it and click edit.
Finally, click on "Add New".
Paste the copied path with CTRL-V.
Click OK and then restart you CMD with Administrator privileges.
I really hope it works!
Looks like you have not activated your virtualenv when using the runserver command.
Windows: <virtualenv dir>\Scripts\activate.bat
Linux: source <virtualenv dir>\bin\activate
You should see (name of virtualenv) as a prefix to your current directory:
(virtualenv) E:\video course\Python\code\web_worker\MxOnline>python manage.py runserver
windows :
(virtualenv dir)\Scripts\activate # this step to activate virtualenv
you should be in the dir of (project name)
python manage.py runserver
you need to go to the root directory
and run the below command
source bin/activate
Once the above command is executed, you will be able to create custom apps
I also face the same problem in windows 10 with anaconda
For me anaconda3\Scripts>activate
it's working good. What you have to do you just need to go to anaconda home
AppData\Local\Continuum\anaconda3\Scripts
and you need to open a cmd prompt and type activate.
It will activate the venv for you.
if you don't want to deactivate or activate the already installed venv just ensure you have set the pythonpath set
set pythonpath=C:\software\venv\include;C:\software\venv\lib;C:\software\venv\scripts;C:\software\venv\tcl;C:\software\venv\Lib\site-packages;
and then execute
"%pythonpath%" %venvpath%Scripts\mytestsite\manage.py runserver "%ipaddress%":8000
The problem is related to this error: Execution Policy Change
Start virtualenv by running the following command:
Command Line
C: \ Users \ Name \ yourdjangofilesname > myvenv \ Scripts \ activate
NOTE: On Windows 10, you may receive an error by Windows PowerShell that the implementation of these scenarios is disabled on this system. In this case, open another Windows PowerShell with the "Run as Administrator" option. After that, try typing the following commands before starting your virtual environment:
C:\WINDOWS\system32> set-executionpolicy remotesigned
Execution Policy Change:
The execution policy helps protect you from scripts that you do not trust. Changing the execution policy might expose you to the security risks described in the about_Execution_Policies help topic at http://go.microsoft.com/fwlink/?LinkID=135170.
Do you want to change the execution policy? [Y] Yes [A] Yes to All [N] No [L] No to All [S] Suspend [?] Help (default is "N"): A
After selection Y(es), close the Powershell admin window, and then go back to the Powershell Window(where you got the error) and run the command again.
> myenv\Scripts\activate and then python manage.py runserver 8085 ,
(8085 or any number if you want to change its default port to work on otherwise you dont need to point out anything. )
I had same problem, I installed all dependencies with root access :
In your case:
sudo pip install django
In my case, I had all dependencies in requirements.txt, So:
sudo pip3 install -r requirements.txt
Just sync your pipenv environment with:
pipenv sync
I had this problem with Django 3.
On manage.py detail the execute_from_command_line import.
You should have:
from django.core.management import execute_from_command_line
Instead of
from django import execute_from_command_line
I had the same problem and my solution was not posted here:
How I got the error
My error came whenever I was installation the requirements.txt file with pip (let's say from cloning a git repository).
Solution
I manually installed each of the modules in the requirements.txt + any other module needed for the installation of those modules (e.g: I got errors and some modules where missing to install other modules so I had to add them too).
If there is anyone who faced with the same problem when using virtual environment and running on MacOS, just try
sudo python manage.py startapp <project_name>
instead of
python manage.py startapp <project_name>
It will solve the problem suprisingly!
I had to install django using the virtual environment pip3 executable directly:
cd [virtual environment folder]/bin
sudo ./pip3 install django
If you already installed Django / configured virtualenv and you still having the error:
ImportError: Couldn't import Django. Are you sure it's installed and
available on your PYTHONPATH environment variable?
Try to run the command pipenv shell before start the server with py manage.py runserver

Installing Django using pip

I'm trying to install Django using pip on my windows machine, however i keep getting an error in command prompt:
Fatal error in launcher: Unable to create process using '"'
I've been searching around on the internet for solutions, but I cant seem to find any.
Thanks in advance
Make sure you have a virtual env setup. Then activate it and try installing django.
Try use the python installation from Active State http://www.activestate.com/activepython/downloads
I'm a Linux User but I've used python and Django on Windows with ActiveState.
When you install it, the installation create a folder with any utils tools, like pip, easy_install and etc... And the pip of this script works well
Have you tried
python -m pip install django
as advised here