I need a solution for entering new data in csv that is stored in S3 bucket in AWS.
At this point we are downloading the file, editing and then uploading it again in s3 and we would like to automatize this process.
We need to add one row in a three column.
Thank you in advance!
I think you will be able to do that using Lambda Functions. You will need to programmatically make the modifications you need over the CSV but there are multiple programming languages that allow you to do that. One quick example is using python and the csv library
Then you can invoke that lambda or add more logic to the operations you want to do using an AWS API Gateway.
You can access the CSV file (object) inside the S3 Bucket from the lambda code using the AWS SDK and append the new rows with data you pass as parameters to the function
There is no way to directly modify the csv stored in S3 (if that is what you're asking). The process will always entail some version of download, modify, upload. There are many examples of how you can do this, for example here
Related
I have a TB sized S3 bucket with pdf files. I need to migrate the old files to glacier. I know that I can create a life cycle rule to migrate files which are older than certain number of days. But in my case currently the bucket consists of both old and new pdf files and they were added at a same time. So they may have same uploaded date. In this case a life cycle rule won't be useful.
In the pdf files there is a field called capture_date. So i need to migrate those files based on the capture_date. (ie: migrate all pdf files if the capture_date < 2015-05-21 likewise).
Will a Fargate job will be useful here? if so, please give a brief idea.
Please suggest your ideas. Thanks in advance
S3 by itself will not read your pdf files. Thus you have to read them yourself, extract data that determine which ones are old and new, and using AWS SDK (or CLI) to move them to Glacier.
Since the files are not too big, you could use S3 Batch along with lambda function which would do the change of the class to glacier.
Alternatively, you could do this on an EC2 instance, using S3 Inventory's CSV list of your objects (assuming large number of them).
And the most traditional way is to just list your bucket, and iterate over each object.
I'm downloading data from an API and writing it to a csv file that I store in an S3 bucket. I'm then copying my file from this input bucket into an output bucket with a Lambda function. From the output bucket I'm ingesting it into a MySQL RDS instance with another Lambda function.
The copy-to-another-bucket and upload-to-RDS lambda functions both get triggered when I create a new object in a bucket. Since I'm appending to my csv file, the upload-to-RDS function gets triggered way more than it should and I end up with ~30 rows in my database instead of 6.
I thought by copying the files between S3 buckets I could avoid this, but it doesn't help. Is there any way to only upload the csv file to the database once it has been written and not while it's being updated? Can I delay the trigger maybe?
The only other solution I can think of is to skip the copy-to-another-bucket function altogether and to schedule the upload-to-RDS function.
You need to realize that S3 doesn't support updating an existing file. If you are appending a row to an existing CSV file in S3, then that operation requires uploading the entire contents of the CSV file to S3 again, which S3 sees as a new object.
If you need to store a temporary version of the CSV file in S3 while you are updating it, then you should store it in a separate path, like s3://your_bucket/tmp and then when you have completed your updates, move it to the final path like s3://your_bucket/complete and only configure the Lambda trigger on the /complete path.
I have a task to analyze weather forecast data in Quicksight. The forecast data is held in NetCDF binary files in a public S3 bucket. The question is: how do you expose the contents of these binary files to Quicksight or even Athena?
There are python libraries that will decode the data from the binary files, such as Iris. They are used like this:
import iris
filename = iris.sample_data_path('forecast_20200304.nc')
cubes = iris.load(filename)
print(cubes)
So what would be the AWS workflow and services necessary to create a data ingestion pipeline that would:
Respond to an SQS message that a new binary file is available
Access the new binary file and decode it to access the forecast data
Add the decoded data to the set of already decoded data from previous SQS notifications
Make all the decoded data available in Athena / Quicksight
Tricky one, this...
What I would do is probably something like this:
Write a Lambda function in Python that is triggered when new files appear in the S3 bucket – either by S3 notifications (if you control the bucket), by SNS, SQS, or by schedule in EventBridge. The function uses the code snipplet included in your question to transform each new file and upload the transformed data to another S3 bucket.
I don't know the size of these files and how often they are published, so whether to convert to CSV, JSON, or Parquet is something you have to decide – if the data is small CSV will probably be easiest and will be good enough.
With the converted data in a new S3 bucket all you need to do is create an Athena table for the data set and start using QuickSight.
If you end up with a lot of small files you might want to implement a second step where you once per day combine the converted files into bigger files, and possibly Parquet, but don't do anything like that unless you have to.
An alternative way would be to use Athena Federated Query: by implementing Lambda function(s) that respond to specific calls from Athena you can make Athena read any data source that you want. It's currently in preview, and as far as I know all the example code is written in Java – but theoretically it would be possible to write the Lambda functions in Python.
I'm not sure whether it would be less work than implementing an ETL workflow like the one you suggest, but yours is one of the use cases for which Athena Federated Query was designed for and it might be worth looking into. If NetCDF files are common and a data source for such files would be useful for other people I'm sure the Athena team would love to talk to you and help you out.
I am trying to find possible orphans in an S3 bucket. What I mean is that we might delete something out of the DB, and for whatever reason, it doesn't get cleared from S3. This can be a bug in our system or something of that nature. I want to double check against our API that the object in S3 maps to something that exists - the naming convention let's us map things together like that.
Scraping an entire bucket every X days seems unscalable. I was thinking that for each object in the bucket, it can add itself to an SQS queue for the relevant checking to happen, every 30 days or so.
I've only found events around uploads and specific modifications over at https://docs.aws.amazon.com/AmazonS3/latest/dev/NotificationHowTo.html. Is there anything more generalized I can't find? Any creative solutions to this problem?
You should activate Amazon S3 Inventory, which can provide a regular CSV file (as often as daily) that contains a list of every object in the Amazon S3 bucket.
You could then trigger some code that compares the contents of the CSV file against the database to find 'orphan' objects.
We have a requirement to append to the existing S3 object, when we run the spark application every hour. I have tried this code:
df.coalesce(1).write.partitionBy("name").mode("append").option("compression", "gzip").parquet("s3n://path")
This application is creating new parquet files for every run. Hence, I am looking for a workaround to achieve this requirement.
Question is:
How we can configure the S3 bucket to get append to the existing object?
It is not possible to append to objects in Amazon S3. They can be overwritten, but not appended.
There is apparently a sneaky method where a file can be multi-part copied, with the 'source' set to the file and then set to some additional data. However, that cannot be accomplished in the method you show.
If you wish to add additional data to an External Table (eg used by EMR or Athena), then simply add an additional file in the correct folder for the desired partition.