I'm trying to setup Redmine on the following products
redmine-4.0.7
Rails 5.2.4.2
Phusion Passenger 6.0.7
Apache/2.4.6
mysql Ver 14.14
I expected there will be initializing page however, I got `Internal Error' from http://mydomain/redmine/
I can see the following messages in log/prduction.log
Completed 500 Internal Server Error in 21ms (ActiveRecord: 1.5ms)
ActiveRecord::StatementInvalid (Mysql2::Error: Can't find file: './redmine/settings.frm' (errno: 13 - Permission denied): SHOW FULL FIELDS FROM `settings`):
It seems I need ./redmine/settings.frm but there isn't.
Does anyone know how to place ./redmine/settings.frm and what content should be in?
The error is thrown by your database server (i.e. MySQL). It seems that MySQL does not have the required permission to access the files where it stores the table data.
Usually, those files are handled (i.e. created, updated, and eventually deleted) entirely by MySQL which requires specific access patterns to ensure consistent data. Because of that, you should strongly avoid to manually change any files under control of MySQL. Instead, you should only use SQL commands to update table structures and table data.
o fix this issue now, you need to fix the permissions of your MySQL data files so that MySQL can properly access them. What exactly is required here is unfortunately not simply explained since there can be various causes. If you have jsut setup your MySQL server, it might be best start entirely new.
WSO2 ESB goes into error state on startup.
During startup, the following H2 database error is thrown.
org.h2.jdbc.JdbcSQLException: Row not found when trying to delete from
index
Due to some data corruption, the following error occurs. Restarts didnt help.
We need more information... ¿What do you need? , restart and recover all the resources in your install or just restart and keep working.
1.- Make a backup copy of all databases files in $CARBON_HOME/databases/ folder
2.- Restart a clean instances removing the corrupted database, remove all the H2 files in $CARBON_HOME/databases/ folder. If you have all your artifacts in $CARBON_HOME/deployment it should rebuild all.
WSO2 products has an inbuilt H2 database. Though its sufficient for DEV environments, Its not recommended for production.
For the above error, the H2 DB has been corrupted. To fix, rename the existing
$CARBON_HOME/databases/ folder and create an empty databases folder.
Start the server, with -Dsetup option as ./wso2server.sh -Dsetup
This will recreate a new DB setup and populate the required data.
I'm curious what the point of the structure.sql file is. It seems to be updated and created every time rails migrations are run. So it seems to be a visual representation of our database. What else can it be used for?
When one runs structure:load, what does it do? What does it mean to load a structure file into a database? Why would you need to do that?
Should one be committing the structure.sql file?
Seems like your rails app is configured to use the sql schema format
#/config/application.rb
...
config.active_record.schema_format = :sql
...
the structure.sql is in place of a schema.db.
Running db:structure:load ( or db:schema:load) will load your entire database. You only need to do this when bringing on a new app instance from scratch. After awhile, your migration files will become quite lengthy and it will be better to do a load first, then a migration when bringing up a new app instance
I've started working on a Django/Postgres site. Sometimes I work in manage.py shell, and accidentally do some DB action that results in an error. Then I am unable to do any database action at all, because for any database action I try to do, I get the error:
current transaction is aborted, commands ignored until end of transaction block
My current workaround is to restart the shell, but I should find a way to fix this without abandoning my shell session.
(I've read this and this, but they don't give actionable instructions on what to do from the shell.)
You can try this:
from django.db import connection
connection._rollback()
The more detailed discussion of This issue can be found here
this happens to me sometimes, often it's the missing
manage.py migrate
or
manage.py syncdb
as mentioned also here
it also can happen the other way around, if you have a schemamigration pending from your models.py. With south you need to update the schema with.
manage.py schemamigration mymodel --auto
Check this
The quick answer is usually to turn on database level autocommit by adding:
'OPTIONS': {'autocommit': True,}
To the database settings.
I had this error after restoring a backup to a totally empty DB. It went away after running:
./manage syncdb
Maybe there were some internal models missing from the dump...
WARNING: the patch below can possibly cause transactions being left in an open state on the db (at least with postgres). Not 100% sure about that (and how to fix), but I highly suggest not doing the patch below on production databases.
As the accepted answer does not solve my problems - as soon as I get any DB error, I cannot do any new DB actions, even with a manual rollback - I came up with my own solution.
When I'm running the Django-shell, I patch Django to close the DB connection as soon as any errors occur. That way I don't ever have to think about rolling back transactions or handling the connection.
This is the code I'm loading at the beginning of my Django-shell-session:
from django import db
from django.db.backends.util import CursorDebugWrapper
old_execute = CursorDebugWrapper.execute
old_execute_many = CursorDebugWrapper.executemany
def execute_wrapper(*args, **kwargs):
try:
old_execute(*args, **kwargs)
except Exception, ex:
logger.error("Database error:\n%s" % ex)
db.close_connection()
def execute_many_wrapper(*args, **kwargs):
try:
old_execute_many(*args, **kwargs)
except Exception, ex:
logger.error("Database error:\n%s" % ex)
db.close_connection()
CursorDebugWrapper.execute = execute_wrapper
CursorDebugWrapper.executemany = execute_many_wrapper
For me it was a test database without migrations. I was using --keepdb for testing. Running it once without it fixed the error.
There are a lot of useful answers on this topic, but still it can be a challenge to figure out what is the root of the issue. Because of this, I will try to give just a little more context on how I was able to figure out the solution for my issue.
For Django specifically, you want to turn on logs for db queries and before the error is raised, you can find the query that is failing in the console. Run that query directly on db, and you will see what is wrong.
In my case, one column was missing in db, so after migration everything worked correctly.
I hope this will be helpful.
If you happen to get such an error when running migrate (South), it can be that you have lots of changes in database schema and want to handle them all at once. Postgres is a bit nasty on that. What always works, is to break one big migration into smaller steps. Most likely, you're using a version control system.
Your current version
Commit n1
Commit n2
Commit n3
Commit n4 # db changes
Commit n5
Commit n6
Commit n7 # db changse
Commit n8
Commit n9 # db changes
Commit n10
So, having the situation described above, do as follows:
Checkout repository to "n4", then syncdb and migrate.
Checkout repository to "n7", then syncdb and migrate.
Checkout repository to "n10", then syncdb and migrate.
And you're done. :)
It should run flawlessly.
If you are using a django version before 1.6 then you should use Christophe's excellent xact module.
xact is a recipe for handling transactions sensibly in Django applications on PostgreSQL.
Note: As of Django 1.6, the functionality of xact will be merged into the Django core as the atomic decorator. Code that uses xact should be able to be migrated to atomic with just a search-and-replace. atomic works on databases other than PostgreSQL, is thread-safe, and has other nice features; switch to it when you can!
I add the following to my settings file, because I like the autocommit feature when I'm "playing around" but dont want it active when my site is running otherwise.
So to get autocommit just in shell, I do this little hack:
import sys
if 'shell' in sys.argv or sys.argv[0].endswith('pydevconsole.py'):
DATABASES['default']['OPTIONS']['autocommit'] = True
NOTE: That second part is just because I work in PyCharm, which doesnt directly run manage.py
I got this error in Django 1.7. When I read in the documentation that
This problem cannot occur in Django’s default mode and atomic()
handles it automatically.
I got a bit suspicious. The errors happened, when I tried running migrations. It turned out that some of my models had my_field = MyField(default=some_function). Having this function as a default for a field worked alright with sqlite and mysql (I had some import errors, but I managed to make it work), though it seems to not work for postgresql, and it broke the migrations to the point that I didn't event get a helpful error message, but instead the one from the questions title.
I'm not 100% sure I'm doing this right, but I think I've found an issue where auth.Permission objects aren't being created soon enough for migrations to use them when you initialize a DB from scratch.
The important details:
I'm trying to initialize a Django DB from scratch using ./manage.py syncdb --migrate --noinput
I have 11 migrations in my chain
The 1st migration creates a new model called myapp.CompanyAccount
The 9th migration tries to fetch the permission myapp.change_companyaccount with:
p = orm[ "auth.Permission" ].objects.get( codename = "change_companyaccount" )
At that point, an exception is raised:
django.contrib.auth.models.DoesNotExist: Permission matching query does not exist
I had assumed that the default permissions that are defined for every object (as per http://docs.djangoproject.com/en/dev/topics/auth/#default-permissions) would have been created by the time the 1st migration finished, but it doesn't appear that they are. If I re-run the migration after the exception, it works the second time because apparently the permission now exists and the 9th migration can execute without error.
Is there anything that can be done to "flush" everything sometime before the 9th migration runs so that the whole thing can run in a single pass without bailing out?
Thanks for any help / advice.
EDIT: In response to John's comment below, I found out that the following command-line sequence will work:
./manage.py syncdb (this initializes the default Django tables)
./manage.py migrate myapp 0001 (this causes the CompanyAccount table to be created)
./manage.py migrate myapp (this migrates all the way to the end without error)
Unfortunately, skipping step #2 above means that you get the same exception in the 0009 migration, which tells me that my original suspicion was correct that default permissions on new models are not created by South immediately, and are somehow only pushed into the database when the entire migration chain finishes.
This is better than where I was (I'm at least avoiding exceptions now) but I still need to manually segment the migration around the creation of new models that latter migrations might need to touch the permissions of, so this isn't a complete solution.
As it turns out, the answer is to manually call db.send_pending_create_signals() at some point before you try to access the default permission since South only does this "flushing" step quite late in the process. Thanks to Andrew Godwin from South for replying to this on the South mailing list here:
http://groups.google.com/group/south-users/browse_thread/thread/1de2219fe4f35959
Don't you have to run the default "syncdb" on a virgin database in order to create the South migration table; before you can use south. Are you doing that? It typically creates the permissions table at that time since you have django.contrib.auth in your INSTALLED_APPS.
http://south.aeracode.org/docs/installation.html#configuring-your-django-installation