R Shiny: Updating proxy table column headers in ObserveEvent - shiny

I would like to update column headers in an R Shiny proxy table. The app should:
Launch with original column header names (e.g. "Do","Re","Mi","Fa","So")
Change those column headers in the proxy table to something else when the user clicks an action button (e.g. "y1","y2","y3","y4","y5")
Shiny has a convenient updateCaption() method that allows for a similar behavior for proxy table captions. I'd like to do something similar with table column headers for proxy tables. Here's my attempt.
library(shiny)
library(DT)
ui <- fluidPage(
fluidRow(
actionButton(
"updatebutton",
label = "Update Table",
style = "margin-right: 5px;"
),
DT::dataTableOutput("myplot")
),
)
server <- function(input, output) {
mycolumnnames <-c("Do","Re","Mi","Fa","So")
myothercolumnnames <- c("y1","y2","y3","y4","y5")
output$myplot <- DT::renderDataTable({
DF <- data.frame(replicate(5, sample(rnorm(5), 10, rep = TRUE)))
datatable(DF, colnames = mycolumnnames,
caption="Original caption")
})
proxy <- DT::dataTableProxy("myplot")
observeEvent(input$updatebutton, {
updateCaption(proxy, caption="Look, I am a NEW caption!")
DF <- data.frame(replicate(5, sample(rnorm(5), 10, rep = TRUE)))
# names(DF) <- myothercolumnnames # This doesn't work
proxy %>% replaceData(DF)
})
}
shinyApp(ui = ui, server = server)

Edit1: Now uses dataTableProxy()
I took away all the things related to color background so I could focus on your problem.
First, I declare some values outside shiny: your data.frame and two vectors for the column names. Then I assign the column names as the first vector.
Inside the app, I retrieve the data as a reactiveVal(), and update its colnames whenever the button is pressed
library(shiny)
library(DT)
mycolumnnames <-c("Do","Re","Mi","Fa","So")
myothercolumnnames <- c("y1","y2","y3","y4","y5")
DF <- data.frame(replicate(5, sample(rnorm(5), 10, rep = TRUE)))
colnames(DF) <- mycolumnnames
ui <- fluidPage(
fluidRow(
actionButton(
"updatebutton",
label = "Update Table",
style = "margin-right: 5px;"
),
DT::dataTableOutput("myplot")
),
)
server <- function(input, output) {
df <- reactiveVal(DF)
output$myplot <- DT::renderDataTable({
datatable(df(), caption="Original caption")
})
observeEvent(input$updatebutton, {
new_data <- data.frame(replicate(5, sample(rnorm(5), 10, rep = TRUE)))
if(!input$updatebutton %% 2 == 0 ){
colnames(new_data) <- myothercolumnnames
} else {
colnames(new_data) <- mycolumnnames
}
df(new_data)
proxy1 <- DT::dataTableProxy("myplot")
updateCaption(proxy1, caption="Look, I am a NEW caption!")
replaceData(proxy1, df())
})
}
shinyApp(ui = ui, server = server)
So whenever you press the button, the colnames are changed between the two vectors.

Related

Remove unwanted white space when rendering leaflet or plot in Shiny

I want the user of my Shiny app to be able to choose between two types of plots by clicking on radiobuttons in the Events panel. The code I have written works, but the page leaves a huge white space when going from "Map" to "Plot". Is there any way to get rid of the white space and position the plot at the very top?
# Load R packages
library(shiny)
library(shinythemes)
library(tidyverse)
library(leaflet)
set.seed(123)
year <- 2001:2020
event <- sample(1:100, size = 20, replace = TRUE)
dat <- as.data.frame(cbind(year, event))
# Define UI
ui <- fluidPage(
shinyjs::useShinyjs(),
theme = shinytheme("journal"),
navbarPage(
"Title",
tabPanel("About",
),
tabPanel("Events",
fluidPage(
titlePanel("Title"),
sliderInput("range", label = "Move slider to select time period", min(2001), max(2020),
value = range(2001:2002), step = 1, sep = "", width = "65%"),
sidebarLayout(
sidebarPanel(
radioButtons("plotType", "Plot type", choices = c("Map" = "m", "Chart" = "l"))),
mainPanel(
leafletOutput("map"),
plotOutput("plot"))
)
)
)
)
)
# Define server function
server <- function(input, output, session) {
observeEvent(input$plotType, {
if(input$plotType == "l"){
shinyjs::disable("range")
}else{
shinyjs::enable("range")
}
})
output$plot <- renderPlot({
if (input$plotType == "l") {
ggplot(dat, aes(year, event)) +
geom_line() +
labs(x = "Year", y = "Events") +
theme_bw()
}
})
output$map <- renderLeaflet({
if ( input$plotType == "m") {
leaflet(dat) %>% addTiles() %>%
fitBounds(~min(11), ~min(54), ~max(67), ~max(24))
}
})
} # server
# Create Shiny object
shinyApp(ui = ui, server = server)
There is a big space because the map html object still exists, but is empty. To avoid this, I created and observeEvent that hides or show the map output depending on input value. I did the same thing with the plot, in cas you need to add others elements below it.
Please note that there are others solutions (conditionalPanel for example), I am just giving you the one I think is the simpliest here.
# Load R packages
library(shiny)
library(shinythemes)
library(tidyverse)
library(leaflet)
set.seed(123)
year <- 2001:2020
event <- sample(1:100, size = 20, replace = TRUE)
dat <- as.data.frame(cbind(year, event))
# Define UI
ui <- fluidPage(
shinyjs::useShinyjs(),
theme = shinytheme("journal"),
navbarPage(
"Title",
tabPanel("About",
),
tabPanel("Events",
fluidPage(
titlePanel("Title"),
sliderInput("range", label = "Move slider to select time period", min(2001), max(2020),
value = range(2001:2002), step = 1, sep = "", width = "65%"),
sidebarLayout(
sidebarPanel(
radioButtons("plotType", "Plot type", choices = c("Map" = "m", "Chart" = "l"))),
mainPanel(
leafletOutput("map"),
plotOutput("plot"))
)
)
)
)
)
# Define server function
server <- function(input, output, session) {
# hide or show map and plot
observeEvent(input$plotType, {
if(input$plotType == "l"){
shinyjs::disable("range")
shinyjs::hide("map")
shinyjs::show("plot")
}
if(input$plotType == "m"){
shinyjs::enable("range")
shinyjs::show("map")
shinyjs::hide("plot")
}
})
output$plot <- renderPlot({
req(input$plotType == "l") # good practice to use req instead of if
ggplot(dat, aes(year, event)) +
geom_line() +
labs(x = "Year", y = "Events") +
theme_bw()
})
output$map <- renderLeaflet({
req(input$plotType == "m")
leaflet(dat) %>% addTiles() %>%
fitBounds(~min(11), ~min(54), ~max(67), ~max(24))
})
} # server
# Create Shiny object
shinyApp(ui = ui, server = server)

Is there a good way to merge data based on a drop down menu in R?

I have been trying to merge data with another data set based on input from a drop down. I have just started learning R and have run into some problems and want to know if there is a better way of going about this.
I am getting an error that it cannot coerce class c(ReactiveExpr, reactive) to a data frame.
library(shiny)
library(plyr)
library(dplyr)
library(xlsx)
server <- function(input, output){
annotation1 <- read.xlsx("input1.xlsx", sheetIndex = 1, header = TRUE)
annotation2 <- read.xlsx("input2.xlsx", sheetIndex = 1, header = TRUE)
data_input <- eventReactive(input$userfile, {
df <- read.xlsx(input$userfile$datapath, sheetIndex = 1, header = TRUE)
})
output$data_input <- renderTable(data_input())
output$annotation <- renderTable(annotation)
data_species <- c("Set1", "Set2")
# Drop-down selection box for which data set
output$choose_species <- renderUI ({
selectInput("species", "Species", as.list(data_species))
})
output$mergeddata <- renderTable({
if(input$species == "Set1"){
eventReactive("Set1",({left_join(data_input(), annotation1, by = c("Column1" = "Column1"))}))
}
else if(input$species == "Set2"){
eventReactive("Set2",({left_join(data_input(), annotation2, by = c("Column1" = "Column1"))}))
}
})
}
ui <- fluidPage(
titlePanel(
div("Test")
),
sidebarLayout(
sidebarPanel(
fileInput("userfile", "Input File", multiple =FALSE,
buttonLabel = "Browse Files", placeholder = "Select File"),
uiOutput("choose_species"),
uiOutput("choose_annotations"),
),
mainPanel(
tableOutput("mergeddata"),
br()
),
),
)
# Run the application
shinyApp(ui = ui, server = server)
In general, you approach seems ok. The error you get is from the line
eventReactive("Set1",({left_join(data_input(), annotation1, by = c("Column1" = "Column1"))}))
An eventReactive returns an (unevaluated) reactive expression which you try to render as data.frame with renderTable. To circumvent this, you could use:
eventReactive("Set1",({left_join(data_input(), annotation1, by = c("Column1" = "Column1"))}))()
However, here you don't need eventReactive, because your reactivity comes from input$species (you want to change the table output based on this input). Therefore, you can just use:
output$mergeddata <- renderTable({
if(input$species == "Set1"){
merge_data <- annotation1
} else {
merge_data <- annotation2
}
left_join(data_input(), merge_data, by = c("Column1"))
})

Save DT table with additional information (Shiny)

I was wondering if it is possible to save DT table content together with some additional information which is not part of the data frame/table like app version number, date of execution, sliderInput value etc.
Thank you!
Reprex below:
library(shiny)
library(DT)
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
sliderInput(inputId = "range", "Set range", 1, 10, 5, 1)
),
mainPanel(
DT::dataTableOutput("table")
)
)
)
server <- function(input, output) {
dfr <- data.frame(var1 <- c(1,2,3),
var2 <- c(11, 22, 33))
output$table <- DT::renderDataTable(
datatable(dfr, extensions = 'Buttons',
class="cell-border stripe",
rownames = FALSE, colnames = c("var1", "var2"),
options = list(dom = "Blfrtip",
buttond = list("copy", list(extend = "collection",
buttons = c("csv", "excel", "pdf"),
text = "Download")), pageLength=10, autoWidth = TRUE,
searchHighlight = TRUE, filter = "top"))
)
}
shinyApp(ui = ui, server = server)
You could save the contents of the data frame and the other information in a list and then save the list.
Or, any R object can have attributes which are completely arbitrary and under your control. You could set attributes of the data frame to record the information you want.
Personally, I'd use the list approach, purely because I don't like attributes.
Here's a suggestion in response to OP's request below.
library(shiny)
library(DT)
ui <- fluidPage(
sidebarLayout(
sidebarPanel(
sliderInput(inputId = "range", "Set range", 1, 10, 5, 1),
actionButton("saveRds", "Save to Rds"),
actionButton("loadRds", "Load from Rds")
),
mainPanel(
DT::dataTableOutput("table"),
wellPanel(h4("Current data"), verbatimTextOutput("text")),
wellPanel(h4("File data"), verbatimTextOutput("loadedData"))
)
)
)
server <- function(input, output) {
dfr <- data.frame(var1 <- c(1,2,3),
var2 <- c(11, 22, 33))
output$table <- DT::renderDataTable(
datatable(dfr, extensions = 'Buttons',
class="cell-border stripe",
rownames = FALSE, colnames = c("var1", "var2"),
options = list(dom = "Blfrtip",
buttond = list("copy", list(extend = "collection",
buttons = c("csv", "excel", "pdf"),
text = "Download")), pageLength=10, autoWidth = TRUE,
searchHighlight = TRUE, filter = "top"))
)
listInfo <- reactive({
list("data"=dfr, "version"="WebApp Version 1.0", "runDate"=date(), "sliderValue"=input$range)
})
output$text <- renderPrint({
listInfo()
})
observeEvent(input$saveRds, {
saveRDS(listInfo(), "data.Rds")
})
fileData <- reactive({
req(input$loadRds)
readRDS("data.Rds")
})
output$loadedData <- renderPrint({
fileData()
})
}
shinyApp(ui = ui, server = server)
The way you implement "save to file" will depend on the file format: Excel files will clearly have different requirements to PDF files, for example. As a minimum effort demonstation, I've created "Save to Rds" and "Load from RDS" buttons in the sidebar and added a verbatimTextOutput to display the contents of the file when it's loaded. [I'm not sufficiently familiar with DT to know how to add the buttons in the table toolbar.]
OP's effort was pretty close: it's just that writing a list to CSV file takes a little more effort than just calling write.csv...

Shiny: subsetting a table from a textInput with multiple values

I have a simple Shiny app. The user enters a code eg: a1, b1, c1 etc in the textInput.
When only one code is listed it works great, but if the user writes two or more codes separated by a comma it doesn't.
How can the user input as many codes as they like?
library(shiny)
ui <- fluidPage(
titlePanel(""),
sidebarLayout(
sidebarPanel(
textInput(inputId = "textBox",
label = "Code Search",
placeholder = "Enter codes here seperated by a comma"),
actionButton("textSearchButton", "Generate the Table")
),
fluidRow(
tableOutput("dtOut")
)
)
)
server <- function(input, output) {
df <- data.frame(Code = paste0(letters, 1),
Description = "Something here",
Value = "Some value")
outputFunc <- function(code, df){
# # Dummy data
# code <- c('a1', 'b1', 'c1')
outTbl <- df[df$Code %in% code,]
return(list(outTbl))
}
textSearch <- eventReactive(input$textSearchButton, {
outputFunc(input$textBox, df)
})
output$dtOut <- renderTable({
textSearch()[[1]]
})
}
shinyApp(ui, server)
I simplified your code a bit:
library(shiny)
ui <- fluidPage(
titlePanel(""),
sidebarLayout(
sidebarPanel(
textInput(inputId = "textBox",
label = "Code Search",
placeholder = "Enter codes here seperated by a comma"),
actionButton("textSearchButton", "Generate the Table")
),
fluidRow(
tableOutput("dtOut")
)
)
)
server <- function(input, output) {
df <- eventReactive(input$textSearchButton, {
# outputFunc(input$textBox, df)
req(input$textBox)
codes <- unlist(strsplit(input$textBox, ", "))
return(data.frame(Code = codes,
Description = "Something here",
Value = "Some value"))
})
output$dtOut <- renderTable({
df()
})
}
shinyApp(ui, server)
Does it respond to your need ?

Shiny - Updating global variable and seeing the result in current session

I am working with global variables that update after time X. This issue I am coming across is it updates the global variable but the current session doesn't update accordingly, however, any new session open uses the updated global variable.
Question: how do I get the current session to use the updated global variable? I thought wrapping it in a reactive would work but it doesn't.
Code:
library(shiny)
library(shinydashboard)
####/GLOBAL/####
num <- 4
####/UI/####
header <- dashboardHeader()
sidebar <- dashboardSidebar()
body <- dashboardBody(
verbatimTextOutput("test")
)
ui <- dashboardPage(header, sidebar, body)
####/SERVER/####
server <- function(input, output, session) {
data <- reactive({num})
output$test <- renderText({ data() })
observe({
invalidateLater(0.5*60*1000,session)
num <<- sample(1:1000,1,replace=T)
})
}
shinyApp(ui, server)
If you wait 30+ seconds and then open up a new session you will see that the number has changed from 4 but the original session still shows 4. They should be showing the same number.
Solved! Realized I needed to wrap it in a reactiveValues versus reactive. I also made the updating a value a dataframe versus a single number because that fits my real dashboard's problem.
library(shiny)
library(shinydashboard)
####/GLOBAL/####
dataset <- data.frame(ColA = c("dogs", "cats", "birds"), ColB = c(10, 2, 2), stringsAsFactors = FALSE)
####/UI/####
header <- dashboardHeader()
sidebar <- dashboardSidebar()
body <- dashboardBody(
box(width = 3, tableOutput("test"))
)
ui <- dashboardPage(header, sidebar, body)
####/SERVER/####
server <- function(input, output, session) {
values <- reactiveValues(n = dataset)
data <- reactive({values$n})
output$test <- renderTable({ data() })
observe({
invalidateLater(0.5*60*1000,session)
new1 <- sample(1:10,1,replace=T)
new2 <- sample(1:10,1,replace=T)
new3 <- sample(1:10,1,replace=T)
print(new1)
print(new2)
print(new3)
dat <- data.frame(ColA = c("dogs", "cats", "birds"), ColB = c(new1, new2, new3), stringsAsFactors = FALSE)
values$n <- dat
dataset <<- dat
})
}
shinyApp(ui, server)