I'm trying to compile a piece of software called Bagel (a quantum chemistry program, some info are here) written in C++ and which uses Boost.
I get a compilation error, and as I don't know C++ and I've never used boost I'm essentially lost. The author of the program says the problem I'm experiences depends on my boost installation and not on the program itself.
I installed boost 1.73.0 (Linux Mint 20, g++ 9.3.0) doing:
sudo ./bootstrap.sh --prefix=/usr/local
sudo ./b2 install
When compiling the program I get the following error:
/usr/local/include/boost/serialization/access.hpp:119:11: error: ‘class std::unordered_set<long unsigned int>’ has no member named ‘serialize’
119 | t.serialize(ar, file_version);
| ~~^~~~~~~~~
/usr/local/include/boost/serialization/access.hpp: In instantiation of ‘static void boost::serialization::access::serialize(Archive&, T&, unsigned
int) [with Archive = boost::archive::binary_oarchive; T = std::unordered_set<long unsigned int>]’:
/usr/local/include/boost/serialization/serialization.hpp:69:22: required from ‘void boost::serialization::serialize(Archive&, T&, unsigned int)
[with Archive = boost::archive::binary_oarchive; T = std::unordered_set<long unsigned int>]’
/usr/local/include/boost/serialization/serialization.hpp:128:18: required from ‘void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::binary_oarchive; T = std::unordered_set<long unsigned int>]’
/usr/local/include/boost/archive/detail/oserializer.hpp:148:40: required from ‘void boost::archive::detail::oserializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::binary_oarchive; T = std::unordered_set<long unsigned int>]’
/usr/local/include/boost/archive/detail/oserializer.hpp:101:1: required from ‘class boost::archive::detail::oserializer<boost::archive::binary_oarchive, std::unordered_set<long unsigned int> >’
/usr/local/include/boost/archive/detail/oserializer.hpp:253:13: required from ‘static void boost::archive::detail::save_non_pointer_type<Archive>::save_standard::invoke(Archive&, const T&) [with T = std::unordered_set<long unsigned int>; Archive = boost::archive::binary_oarchive]’
/usr/local/include/boost/archive/detail/oserializer.hpp:308:22: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
...
The following post https://lists.boost.org/boost-users//2014/03/81583.php report on a similar error, but I don't understand what I should to solve it.
Any help would be appreciated!
Requirements say
Boost C++ Libraries - Version 1.53.0 or newer
Boost is famous of making non-backward compatible changes. 1.73 is quite distant from 1.53. I would try to install 1.53 which author of Bagel had to use and this one worked at least for him/her.
Related
A colleague has provided me with a package of c++ code based on some Celestrak satellite code https://celestrak.org/software/vallado/cpp.zip.
In several places the code, i.e coordfk5.cpp declares vectors of vectors like
std::vector< std::vector<double> > prec, nut(3,3), st, stdot, pm, pmp
The nut(3,3) and similar declarations won't compile on my system yet does for the colleague on his and presumably others who have downloaded the original package.
stl_vector.h: In instantiation of 'void std::vector<_Tp, _Alloc>::_M_initialize_dispatch(_Integer, _Integer, std::__true_type) [with _Integer = int; _Tp = std::vector; _Alloc = std::allocatorstd::vector<double >]':
stl_vector.h:404:55: required from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = int; _Tp = std::vector; _Alloc = std::allocatorstd::vector<double >; std::vector<_Tp, _Alloc>::allocator_type = std::allocatorstd::vector<double >]'
stl_vector.h:1166:59: error: no matching function for call to 'std::vectorstd::vector<double >::_M_fill_initialize(std::vectorstd::vector<double >::size_type, int&)'
_M_fill_initialize(static_cast<size_type>(__n), __value);
I'm on gcc version 4.8.1, the colleague is on 4.6.3. I've tried adding -std=c++98 etc options to no avail.
I can get the code to compile by changing to eg
nut(3,std::vector<double>(3))
but not sure if this is right as the code then seg faults.
So two questions,
Is it possible with some options/switches to compile the code as is?
If not any idea how these vectors should be declared and set-up?
The nut(3,3) attempts to use 3 as initializer for the inner std::vector<int>.
However, std::vector has an explicit constructor which is why it doesn't compile. As you have found, explicit constructors have to have the type explicitly written, with nut(3, std::vector<int>(3)).
Some older compilers came with a vector that didn't mark the constructor as explicit which would explain your colleagues' observations.
I want to use c++ numerical recipes on my python script but I am having some issues compiling some stuff in the Boost Python Libraries. Specificly I want to expose the amoeba function to python. I use Make rather than BJam. This is what I get when I try to compile:
costantinoagnesi#costantino-HP-Pavilion-dv5-Notebook-PC:~/Desktop/Boost Python Test$ make
g++ -I/usr/include/python2.7 -I/usr/include -fPIC -c amoeba_py.C
In file included from /usr/local/include/boost/python/object/make_instance.hpp:10:0,
from /usr/local/include/boost/python/object/make_ptr_instance.hpp:8,
from /usr/local/include/boost/python/to_python_indirect.hpp:11,
from /usr/local/include/boost/python/converter/arg_to_python.hpp:10,
from /usr/local/include/boost/python/call.hpp:15,
from /usr/local/include/boost/python/object_core.hpp:14,
from /usr/local/include/boost/python/args.hpp:25,
from /usr/local/include/boost/python.hpp:11,
from amoeba_py.C:73:
/usr/local/include/boost/python/converter/registered.hpp: In function ‘const boost::python::converter::registration&
boost::python::converter::detail::registry_lookup2(T& (*)()) [with T = double(const NRVec<double>&)]’:
/usr/local/include/boost/python/converter/registered.hpp:94:40: instantiated from ‘const >boost::python::converter::registration& boost::python::converter::detail::registry_lookup1(boost::type<T>) [with T = double (&)(const NRVec<double>&)]’
/usr/local/include/boost/python/converter/registered.hpp:105:23: instantiated from const boost::python::converter::registration& boost::python::converter::detail::registered_base<double (&)(const NRVec<double>&)>::converters’
/usr/local/include/boost/python/converter/arg_from_python.hpp:269:99: instantiated from ‘boost::python::converter::pointer_arg_from_python<T>::pointer_arg_from_python(PyObject*) [with T = double (*)(const NRVec<double>&), PyObject = _object]’
/usr/local/include/boost/python/arg_from_python.hpp:70:18: instantiated from ‘boost::python::arg_from_python<T>::arg_from_python(PyObject*) [with T = double (*)(const NRVec<double>&), PyObject = _object]’
/usr/local/include/boost/preprocessor/iteration/detail/local.hpp:43:1: instantiated from >‘PyObject* boost::python::detail::caller_arity<5u>::impl<F, Policies, Sig>::operator( (PyObject*, PyObject*) [with F = void (*)(NRMat<double>&, NRVec<double>&, double, double (*)(const NRVec<double>&), int&), Policies = boost::python::default_call_policies, Sig = boost::mpl::vector6<void, NRMat<double>&, NRVec<double>&, double, double (*)(const NRVec<double>&), int&>, PyObject = _object]’
/usr/local/include/boost/python/object/py_function.hpp:38:33: instantiated from ‘PyObject* boost::python::objects::caller_py_function_impl<Caller>::operator()(PyObject*, PyObject*) [with Caller = boost::python::detail::caller<void (*)(NRMat<double>&, NRVec<double>&, double, double (*)(const NRVec<double>&), int&), boost::python::default_call_policies, boost::mpl::vector6<void, NRMat<double>&, NRVec<double>&, double, double (*)(const NRVec<double>&), int&> >, PyObject = _object]’ amoeba_py.C:79:1: instantiated from here
/usr/local/include/boost/python/converter/registered.hpp:86:7: error: no matching function >for call to ‘register_shared_ptr1(double (*)(const NRVec<double>&))’
/usr/local/include/boost/python/converter/registered.hpp:86:7: note: candidate is:
/usr/local/include/boost/python/converter/registered.hpp:77:3: note: template<class T> void boost::python::converter::detail::register_shared_ptr1(const volatile T*)
make: *** [amoeba_py.o] Error 1
Can someone help me decipher what this error means and perhaps give me some helpful tip to finish my project. It's worth noting that the classic Boost Python example compiles just fine.
Thank you!
Here's the offending text: (lines 73-79)
#include <boost/python.hpp>
using namespace boost::python;
BOOST_PYTHON_MODULE(amoeba)
{
def("amoeba", NR::amoeba);
}
I suspect you're having a similar problem to the guy who asked this question. Are you passing a function pointer as an argument in your C++ code? If so, you can't do that in Python -- see the answer as to why.
You forgot reference operator. Thus the def is getting parameter type double (*)(const NRVec<double>&) instead of const volatile T* it expects.
Your code ought to look like this:
BOOST_PYTHON_MODULE(amoeba)
{
def("amoeba", &NR::amoeba);
}
I'm new using Boost serialization. I'm using xml serialization and the non intrusive version. I followed the tutorial (from Boost website) step by step and my code works fine.
The problem arise when I put my class (the code is divided in .h and .cpp plus a main.cpp file) in a namespace (ns_mytests). In this case the compiler (g++) complains and I have the following errors:
g++ -c -g test.o.d -o build/Debug/GNU-Linux-x86/sources/test.o sources/test.cpp
/opt/local/include/boost/serialization/split_free.hpp: In static member function 'static void boost::serialization::free_saver<Archive, T>::invoke(Archive&, const T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ns_mytests::Test]':
/opt/local/include/boost/serialization/split_free.hpp:74: instantiated from 'void boost::serialization::split_free(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ns_mytests::Test]'
sources/test.h:117: instantiated from 'void boost::serialization::serialize(Archive&, ns_mytests::Test&, unsigned int) [with Archive = boost::archive::xml_oarchive]'
/opt/local/include/boost/serialization/serialization.hpp:128: instantiated from 'void boost::serialization::serialize_adl(Archive&, T&, unsigned int) [with Archive = boost::archive::xml_oarchive, T = ns_mytests::Test]'
/opt/local/include/boost/archive/detail/oserializer.hpp:148: instantiated from 'void boost::archive::detail::oserializer<Archive, T>::save_object_data(boost::archive::detail::basic_oarchive&, const void*) const [with Archive = boost::archive::xml_oarchive, T = ns_mytests::Test]'
sources/test.cpp:146: instantiated from here
/opt/local/include/boost/serialization/split_free.hpp:45: error: no matching function for call to 'save(boost::archive::xml_oarchive&, const ns_mytests::Test&, const boost::serialization::version_type&)'
make[2]: *** [build/Debug/GNU-Linux-x86/sources/test.o] Error 1
make[1]: *** [.build-conf] Error 2
make: *** [.build-impl] Error 2
It's sure that I'm doing wrong something, but I could't find my error.
Any help is appreciated.
Thanks,
westfork
Define the non-intrusive save in the namespace where the type to be serialized is defined.
I was trying to create my own module for lighttpd, after some minutes i've discovered that this is all in c! and i need maps and some other class i've made in c++. so i come across http://redmine.lighttpd.net/wiki/lighttpd/CppModules and also http://redmine.lighttpd.net/wiki/lighttpd/CppHelperClasses there is (for lighttpd-cpp) a mercurial project with some demo modules written here, but no explanation on how to copile and integrate these in the lighttpd environment.. these also in the /src/ directory didn't compile (obviously, all dependancies are missing..
src]# cpp mod_blank.cpp -o a
In file included from mod_blank.cpp:5:
mod_blank.hpp:5:35: error: lighttpd-cpp/plugin.hpp: No such file or directory
mod_blank.hpp:7:30: error: boost/mpl/list.hpp: No such file or directory
anyone have some idea? similar experience or other way to do a custome module using c++ ?
Update
Thanks to messa i have installed scons, tryed to compile and i got these errors
./include/lighttpd-cpp/datatype_helpers.hpp:86: error: invalid conversion from 'long unsigned int' to 'config_values_type_t'
./include/lighttpd-cpp/datatype_helpers.hpp: In instantiation of 'const config_values_type_t config_option_traits_base<short int, 2ul>::value_enum':
./include/lighttpd-cpp/datatype_helpers.hpp:347: instantiated from 'handler_t config_option<OptionType, ConfigScopeType, OptionTraits>::set_defaults(const server&) [with OptionType = short int, long unsigned int ConfigScopeType = 2ul, OptionTraits = config_option_traits<short int>]'
src/mod_blank.cpp:6: instantiated from here
./include/lighttpd-cpp/datatype_helpers.hpp:243: error: uninitialized const 'config_option_traits_base<short int, 2ul>::value_enum'
./include/lighttpd-cpp/datatype_helpers.hpp: In instantiation of 'const config_values_type_t config_option_traits_base<bool, 4ul>::value_enum':
./include/lighttpd-cpp/datatype_helpers.hpp:347: instantiated from 'handler_t config_option<OptionType, ConfigScopeType, OptionTraits>::set_defaults(const server&) [with OptionType = bool, long unsigned int ConfigScopeType = 2ul, OptionTraits = config_option_traits<bool>]'
src/mod_blank.cpp:6: instantiated from here
./include/lighttpd-cpp/datatype_helpers.hpp:243: error: uninitialized const 'config_option_traits_base<bool, 4ul>::value_enum'
./include/lighttpd-cpp/datatype_helpers.hpp: In instantiation of 'const config_values_type_t config_option_traits_base<int, 3ul>::value_enum':
./include/lighttpd-cpp/datatype_helpers.hpp:347: instantiated from 'handler_t config_option<OptionType, ConfigScopeType, OptionTraits>::set_defaults(const server&) [with OptionType = int, long unsigned int ConfigScopeType = 2ul, OptionTraits = config_option_traits<int>]'
src/mod_blank.cpp:6: instantiated from here
./include/lighttpd-cpp/datatype_helpers.hpp:243: error: uninitialized const 'config_option_traits_base<int, 3ul>::value_enum'
./include/lighttpd-cpp/datatype_helpers.hpp: In instantiation of 'const config_values_type_t config_option_traits_base<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, 1ul>::value_enum':
./include/lighttpd-cpp/datatype_helpers.hpp:347: instantiated from 'handler_t config_option<OptionType, ConfigScopeType, OptionTraits>::set_defaults(const server&) [with OptionType = std::basic_string<char, std::char_traits<char>, std::allocator<char> >, long unsigned int ConfigScopeType = 2ul, OptionTraits = config_option_traits<std::basic_string<char, std::char_traits<char>, std::allocator<char> > >]'
src/mod_blank.cpp:6: instantiated from here
./include/lighttpd-cpp/datatype_helpers.hpp:243: error: uninitialized const 'config_option_traits_base<std::basic_string<char, std::char_traits<char>, std::allocator<char> >, 1ul>::value_enum'
i'm running centos 5.5 64bit i have already a version of lighttpd compiled and installed here, also i didn't understood what's the role of lighttpd-cpp in building new lighttpd modules using cpp, i have to build everything from lighttpd-cpp and use this version instead of my lighttpd 1.4.28 downloaded from http://www.lighttpd.net/? if yes that's sad because i may loose updates and version stability using not so well tested lighttpd source, and instead, if i have to implement then new modules in old lighttpd, how to do that? :)
You are compiling it wrong - paths to header files are missing. You should use a build system, which is SCons in case of lighttpd-cpp. Install scons and then continue with README :)
I need to (de)serialize data on both Windows and Linux (and transfer the files in between). I wanted to use the portable binary archives of Boost's serialization library which can be found in the examples, see e.g. at http://boost-doc-zh.googlecode.com/svn-history/r380/trunk/libs/serialization/example/
This works fine on Windows (VS 2008) but fails to compile under GCC 4.3.2 with the following errors.
Can anybody suggest a solution?
Thanks a lot!
/projects/lib/BOOST/1_44_0/include/boost/archive/basic_archive.hpp: In member function 'void portable_binary_iarchive::init(unsigned int)':
/projects/lib/BOOST/1_44_0/include/boost/archive/basic_archive.hpp:78: error: 'uint_least32_t boost::archive::version_type::t' is private
/home/myfolder/src/portable_binary_iarchive.cpp:92: error: within this context
/home/myfolder/src/portable_binary_iarchive.hpp: In member function 'void portable_binary_iarchive::load(T&) [with T = boost::archive::class_id_type]':
/projects/lib/BOOST/1_44_0/include/boost/archive/detail/iserializer.hpp:107: instantiated from 'static void boost::archive::load_access::load_primitive(Archive&, T&) [with Archive = portable_binary_iarchive, T = boost::archive::class_id_type]'
/projects/lib/BOOST/1_44_0/include/boost/archive/detail/iserializer.hpp:356: instantiated from 'static void boost::archive::detail::load_non_pointer_type<Archive>::load_primitive::invoke(Archive&, T&) [with T = boost::archive::class_id_type, Archive = portable_binary_iarchive]'
/projects/lib/BOOST/1_44_0/include/boost/archive/detail/iserializer.hpp:433: instantiated from 'static void boost::archive::detail::load_non_pointer_type<Archive>::invoke(Archive&, T&) [with T = boost::archive::class_id_type, Archive = portable_binary_iarchive]'
/projects/lib/BOOST/1_44_0/include/boost/archive/detail/iserializer.hpp:586: instantiated from 'void boost::archive::load(Archive&, T&) [with Archive = portable_binary_iarchive, T = boost::archive::class_id_type]'
/projects/lib/BOOST/1_44_0/include/boost/archive/detail/common_iarchive.hpp:66: instantiated from 'void boost::archive::detail::common_iarchive<Archive>::load_override(T&, int) [with T = boost::archive::class_id_type, Archive = portable_binary_iarchive]'
/home/myfolder/src/portable_binary_iarchive.hpp:140: instantiated from 'void portable_binary_iarchive::load_override(T&, int) [with T = boost::archive::class_id_type]'
/projects/lib/BOOST/1_44_0/include/boost/archive/detail/interface_iarchive.hpp:60: instantiated from 'Archive& boost::archive::detail::interface_iarchive<Archive>::operator>>(T&) [with T = boost::archive::class_id_type, Archive = portable_binary_iarchive]'
/projects/lib/BOOST/1_44_0/include/boost/archive/detail/common_iarchive.hpp:51: instantiated from 'void boost::archive::detail::common_iarchive<Archive>::vload(boost::archive::class_id_type&) [with Archive = portable_binary_iarchive]'
/home/myfolder/src/portable_binary_iarchive.cpp:128: instantiated from here
/home/myfolder/src/portable_binary_iarchive.hpp:107: error: call of overloaded 'class_id_type(intmax_t&)' is ambiguous
/projects/lib/BOOST/1_44_0/include/boost/archive/basic_archive.hpp:118: note: candidates are: boost::archive::class_id_type::class_id_type(size_t)
/projects/lib/BOOST/1_44_0/include/boost/archive/basic_archive.hpp:115: note: boost::archive::class_id_type::class_id_type(int)
Not really a direct answer to your question, but I've had a lot of success with Google's Protocol Buffers. They use them internally and open sourced them: http://code.google.com/p/protobuf/
I built with g++ 4.1.2 and it works fine. I hate bjam, it's hard to see what is happening, and it's unbelievably slow.
There was a warning about a deprecated header, and since this has the earmarks of a deprecated friend declaration, I was hoping to see something old, but I don't.
Did you build it with bjam or did you try to pull out the serialization into your own directory and do it yourself? Because your directory structure is not exactly like the one they have in the package.
#define private public
ought to get rid of the first error about accessing private members. It's a bit cheeky! But it can work as a temporary fix until you've understood the whole program better.