How to schedule an export from a BigQuery table to Cloud Storage? - google-cloud-platform

I have successfully scheduled my query in BigQuery, and the result is saved as a table in my dataset. I see a lot of information about scheduling data transfer in to BigQuery or Cloud Storage, but I haven't found anything regarding scheduling an export from a BigQuery table to Cloud Storage yet.
Is it possible to schedule an export of a BigQuery table to Cloud Storage so that I can further schedule having it SFTP-ed to me via Google BigQuery Data Transfer Services?

There isn't a managed service for scheduling BigQuery table exports, but one viable approach is to use Cloud Functions in conjunction with Cloud Scheduler.
The Cloud Function would contain the necessary code to export to Cloud Storage from the BigQuery table. There are multiple programming languages to choose from for that, such as Python, Node.JS, and Go.
Cloud Scheduler would send an HTTP call periodically in a cron format to the Cloud Function which would in turn, get triggered and run the export programmatically.
As an example and more specifically, you can follow these steps:
Create a Cloud Function using Python with an HTTP trigger. To interact with BigQuery from within the code you need to use the BigQuery client library. Import it with from google.cloud import bigquery. Then, you can use the following code in main.py to create an export job from BigQuery to Cloud Storage:
# Imports the BigQuery client library
from google.cloud import bigquery
def hello_world(request):
# Replace these values according to your project
project_name = "YOUR_PROJECT_ID"
bucket_name = "YOUR_BUCKET"
dataset_name = "YOUR_DATASET"
table_name = "YOUR_TABLE"
destination_uri = "gs://{}/{}".format(bucket_name, "bq_export.csv.gz")
bq_client = bigquery.Client(project=project_name)
dataset = bq_client.dataset(dataset_name, project=project_name)
table_to_export = dataset.table(table_name)
job_config = bigquery.job.ExtractJobConfig()
job_config.compression = bigquery.Compression.GZIP
extract_job = bq_client.extract_table(
table_to_export,
destination_uri,
# Location must match that of the source table.
location="US",
job_config=job_config,
)
return "Job with ID {} started exporting data from {}.{} to {}".format(extract_job.job_id, dataset_name, table_name, destination_uri)
Specify the client library dependency in the requirements.txt file
by adding this line:
google-cloud-bigquery
Create a Cloud Scheduler job. Set the Frequency you wish for
the job to be executed with. For instance, setting it to 0 1 * * 0
would run the job once a week at 1 AM every Sunday morning. The
crontab tool is pretty useful when it comes to experimenting
with cron scheduling.
Choose HTTP as the Target, set the URL as the Cloud
Function's URL (it can be found by selecting the Cloud Function and
navigating to the Trigger tab), and as HTTP method choose GET.
Once created, and by pressing the RUN NOW button, you can test how the export
behaves. However, before doing so, make sure the default App Engine service account has at least the Cloud IAM roles/storage.objectCreator role, or otherwise the operation might fail with a permission error. The default App Engine service account has a form of YOUR_PROJECT_ID#appspot.gserviceaccount.com.
If you wish to execute exports on different tables,
datasets and buckets for each execution, but essentially employing the same Cloud Function, you can use the HTTP POST method
instead, and configure a Body containing said parameters as data, which
would be passed on to the Cloud Function - although, that would imply doing
some small changes in its code.
Lastly, when the job is created, you can use the Cloud Function's returned job ID and the bq CLI to view the status of the export job with bq show -j <job_id>.

Not sure if this was in GA when this question was asked, but at least now there is an option to run an export to Cloud Storage via a regular SQL query. See the SQL tab in Exporting table data.
Example:
EXPORT DATA
OPTIONS (
uri = 'gs://bucket/folder/*.csv',
format = 'CSV',
overwrite = true,
header = true,
field_delimiter = ';')
AS (
SELECT field1, field2
FROM mydataset.table1
ORDER BY field1
);
This could as well be trivially setup via a Scheduled Query if you need a periodic export. And, of course, you need to make sure the user or service account running this has permissions to read the source datasets and tables and to write to the destination bucket.
Hopefully this is useful for other peeps visiting this question if not for OP :)

You have an alternative to the second part of the Maxim answer. The code for extracting the table and store it into Cloud Storage should work.
But, when you schedule a query, you can also define a PubSub topic where the BigQuery scheduler will post a message when the job is over. Thereby, the scheduler set up, as described by Maxim is optional and you can simply plug the function to the PubSub notification.
Before performing the extraction, don't forget to check the error status of the pubsub notification. You have also a lot of information about the scheduled query; useful is you want to perform more checks or if you want to generalize the function.
So, another point about the SFTP transfert. I open sourced a projet for querying BigQuery, build a CSV file and transfert this file to FTP server (sFTP and FTPs aren't supported, because my previous company only used FTP protocol!). If your file is smaller than 1.5Gb, I can update my project for adding the SFTP support is you want to use this. Let me know

Related

Upload to BigQuery from Cloud Storage

Have ~50k compressed (gzip) json files daily that need to be uploaded to BQ with some transformation, no API calls. The size of the files may be up to 1Gb.
What is the most cost-efficient way to do it?
Will appreciate any help.
Most efficient way to use Cloud Data Fusion.
I would suggest below approach
Create cloud function and trigger on every new file upload to uncompress file.
Create datafusion job with GCS file as source and bigquery as sink with desired transformation.
Refer below my youtube video.
https://youtu.be/89of33RcaRw
Here is (for example) one way - https://cloud.google.com/bigquery/docs/loading-data-cloud-storage-json...
... but quickly looking over it however one can see that there are some specific limitations. So perhaps simplicity, customization and maintainability of solution can also be added to your “cost” function.
Not knowing some details (for example read "Limitations" section under my link above, what stack you have/willing/able to use, files names or if your files have nested fields etc etc etc ) my first thought is cloud function service ( https://cloud.google.com/functions/pricing ) that is "listening" (event type = Finalize/Create) to your cloud (storage) bucket where your files land (if you go this route put your storage and function in the same zone [if possible], which will make it cheaper).
If you can code Python here is some started code:
main.py
import pandas as pd
from pandas.io import gbq
from io import BytesIO, StringIO
import numpy as np
from google.cloud import storage, bigquery
import io
def process(event, context):
file = event
# check if its your file can also check for patterns in name
if file['name'] == 'YOUR_FILENAME':
try:
working_file = file['name']
storage_client = storage.Client()
bucket = storage_client.get_bucket('your_bucket_here')
blob = bucket.blob(working_file)
#https://stackoverflow.com/questions/49541026/how-do-i-unzip-a-zip-file-in-google-cloud-storage
zipbytes = io.BytesIO(blob.download_as_string())
#print for logging
print(f"file downloaded, {working_file}")
#read_file_as_df --- check out docs here = https://pandas.pydata.org/docs/reference/api/pandas.read_json.html
# if nested might need to go text --> to dictionary and then do some preprocessing
df = pd.read_json(zipbytes, compression='gzip', low_memory= False)
#write processed to big query
df.to_gbq(destination_table ='your_dataset.your_table',
project_id ='your_project_id',
if_exists = 'append')
print(f"table bq created, {working_file}")
# if you want to delete processed file from your storage to save on storage costs uncomment 2 lines below
# blob.delete()
#print(f"blob delete, {working_file}")
except Exception as e:
print(f"exception occured {e}, {working_file}")
requirements.txt
# Function dependencies, for example:
# package>=version
google-cloud-storage
google-cloud-bigquery
pandas
pandas.io
pandas-gbq
PS
Some alternatives include
Starting up a VM and run your script on a schedule and shutting VM down once process is done ( for example cloud scheduler –-> pub/sub –-> cloud function –-> which starts up your vm --> which then runs your script)
Using app engine to run your script (similar)
Using cloud run to run your script (similar)
Using composer/airflow (not similar to 1,2&3) [ could use all types of approaches including data transfers etc, just not sure what stack you are trying to use or what you already have running ]
Scheduling vertex ai workbook (not similar to 1,2&3, basically write up a jupyter notebook and schedule it to run in vertex ai)
Try to query files directly (https://cloud.google.com/bigquery/external-data-cloud-storage#bq_1) and schedule that query (https://cloud.google.com/bigquery/docs/scheduling-queries) to run (but again not sure about your overall pipeline)
Setup for all (except #5 & #6) just in technical debt to me is not worth it if you can get away with functions
Best of luck,

Is GCP Firestore Native Mode export to BQ import supported?

I was exploring option to load Firestore Native Mode data (collection and documents) into BQ. But its not working out for me.
Question: Does Big Query support import of extract from Firestore Native export?
Setup: 1 collection with multiple documents (no sub collections).
Steps:
- Export to Cloud Bucket: https://firebase.google.com/docs/firestore/manage-data/export-import
- Import in BQ: https://cloud.google.com/bigquery/docs/loading-data-cloud-firestore
Error While loading in BQ: 'Does not contain valid backup metadata'
Analysis: Its mentioned in the link that URI should have KIND_COLLECTION_ID and that file should end with [KIND_COLLECTION_ID].export_metadata. But none of these are true for Firestore Native mode export file. Its applicable for Firestore Datastore mode export.
Verify [KIND_COLLECTION_ID] is specified in your Cloud Storage URI. If you specify the URI without
[KIND_COLLECTION_ID], you receive the following error: does not contain valid backup metadata. (error
code: invalid)
The URI for your Cloud Firestore export file should end with [KIND_COLLECTION_ID].export_metadata.
For example: default_namespace_kind_Book.export_metadata. In this example, Book is the collection ID,
and default_namespace_kind_Book is the file name generated by Cloud Firestore
When one creates an export of firestore collections to GCS, a directory structure is created that looks like:
[Bucket]
- [Date/Time]
- [Date/Time].overall_export_metadata
- all_namespaces
- kind_[collection]
- all_namespaces_kind_[collection].export_metadata
When one imports an export into BigQuery, use the file:
[Bucket]/[Date/Time]/all_namespaces/kind_[collection]/all_namespaces_kind_[collection].export_metadata
Specifically, if one uses [Bucket]/[Date/Time]/[Date/Time].overall_export_metadata you will get the error you described. See also the note here under Console > Bullet 3 which reads:
Note: Do not use the file ending in overall_export_metadata. This file
is not usable by BigQuery.
If you want to create a pipeline from Firestore to Bigquery you should manualy format the Firestore collection to a Bigquery Table. I have used gcloud scheduler, cloud functions and firestore batched operations to migrate the data from Firestore to Bigquery. I created an example code here

How to make requests in third party APIs and load the results periodically on google BigQuery? What google services should I use?

I need to get the data from a third party API and ingest it in google BigQuery. Perhaps, I need to automate this process through google services to do it periodically.
I am trying to use Cloud Functions, but it needs a trigger. I have also read about App Engine, but I believe it is not suitable for only one function to make pull requests.
Another doubt is: do I need to load the data into cloud storage or can I load it straight to BigQuery? Should I use Dataflow and make any configuration?
def upload_blob(bucket_name, request_url, destination_blob_name):
"""
Uploads a file to the bucket.
"""
storage_client = storage.Client()
bucket = storage_client.get_bucket(bucket_name)
blob = bucket.blob(destination_blob_name)
request_json = requests.get(request_url['url'])
print('File {} uploaded to {}.'.format(
bucket_name,
destination_blob_name))
def func_data(request_url):
BUCKET_NAME = 'dataprep-staging'
BLOB_NAME = 'any_name'
BLOB_STR = '{"blob": "some json"}'
upload_blob(BUCKET_NAME, request_url, BLOB_NAME)
return f'Success!'
I expect advise about the architecture (google services) that I should use for creating this pipeline. For example, use cloud functions (get the data from API), then schedule a job using service 'X' to input data to storage and finally pull the data from storage.
You can use function. Create an http triggered function and call it periodically with cloud scheduler.
By the way, you can also call http endpoint of appengine or cloud run.
About storage, answer is no. If the API result is not too large for function allowed memory, you can write in /tmp directory and load data to bigquery with this file. You can size your function up to 2go if needed

How can I export data from Bigquery to an external server in a CSV?

I need to automate a process to extract data from Google Big Query and exported to an external CSV in a external server outside of the GCP.
I just researching how to to that I found some commands to run from my External Server. But I prefer to do everything in GCP to avoid possible problems.
To run the query to CSV in Google storage
bq --location=US extract --compression GZIP 'dataset.table' gs://example-bucket/myfile.csv
To Download the csv from Google Storage
gsutil cp gs://[BUCKET_NAME]/[OBJECT_NAME] [OBJECT_DESTINATION]
But I would like to hear your suggestions
If you want to fully automatize this process, I would do the following:
Create a Cloud Function to handle the export:
This is the more lightweight solution, as Cloud Functions are serverless, and provide flexibility to implement code with the Client Libraries. See the quickstart, I recommend you to use the console to create the functions to start with.
In this example I recommend you to trigger the Cloud Function from an HTTP request, i.e. when the function URL is called, it will run the code inside of it.
An example Cloud Function code in Python, that creates the export when a HTTP request is made:
main.py
from google.cloud import bigquery
def hello_world(request):
project_name = "MY_PROJECT"
bucket_name = "MY_BUCKET"
dataset_name = "MY_DATASET"
table_name = "MY_TABLE"
destination_uri = "gs://{}/{}".format(bucket_name, "bq_export.csv.gz")
bq_client = bigquery.Client(project=project_name)
dataset = bq_client.dataset(dataset_name, project=project_name)
table_to_export = dataset.table(table_name)
job_config = bigquery.job.ExtractJobConfig()
job_config.compression = bigquery.Compression.GZIP
extract_job = bq_client.extract_table(
table_to_export,
destination_uri,
# Location must match that of the source table.
location="US",
job_config=job_config,
)
return "Job with ID {} started exporting data from {}.{} to {}".format(extract_job.job_id, dataset_name, table_name, destination_uri)
requirements.txt
google-cloud-bigquery
Note that the job will run asynchronously in the background, you will receive a return response with the job ID, which you can use to check the state of the export job in the Cloud Shell, by running:
bq show -j <job_id>
Create a Cloud Scheduler scheduled job:
Follow this documentation to get started. You can set the Frequency with the standard cron format, for example 0 0 * * * will run the job every day at midnight.
As a target, choose HTTP, in the URL put the Cloud Function HTTP URL (you can find it in the console, inside the Cloud Function details, under the Trigger tab), and as HTTP method choose GET.
Create it, and you can test it in the Cloud Scheduler by pressing the Run now button in the Console.
Synchronize your external server and the bucket:
Up until now you only have scheduled exports to run every 24 hours, now to synchronize the bucket contents with your local computer, you can use the gsutil rsync command. If you want to save the imports, lets say to the my_exports folder, you can run, in your external server:
gsutil rsync gs://BUCKET_WITH_EXPORTS /local-path-to/my_exports
To periodically run this command in your server, you could create a standard cron job in your crontab inside your external server, to run each day as well, just at a few hours later than the bigquery export, to ensure that the export has been made.
Extra:
I have hard-coded most of the variables in the Cloud Function to be always the same. However, you can send parameters to the function, if you do a POST request instead of a GET request, and send the parameters as data in the body.
You will have to change the Cloud Scheduler job to send a POST request to the Cloud Function HTTP URL, and in the same place you can set the body to send the parameters regarding the table, dataset and bucket, for example. This will allow you to run exports from different tables at different hours, and to different buckets.

Importing data from Excel sheet to DynamoDB table

I am having a problem importing data from Excel sheet to a Amazon DynamoDB table. I have the Excel sheet in an Amazon S3 bucket and I want to import data from this sheet to a table in DynamoDB.
Currently I am following Import and Export DynamoDB Data Using AWS Data Pipeline but my pipeline is not working normally.
It gives me WAITING_FOR_RUNNER status and after sometime the status changed to CANCELED. Please suggest what I am doing wrong or is there any other way to import data from an Excel sheet to a DynamoDB table?
The potential reasons are as follows:-
Reason 1:
If your pipeline is in the SCHEDULED state and one or more tasks
appear stuck in the WAITING_FOR_RUNNER state, ensure that you set a
valid value for either the runsOn or workerGroup fields for those
tasks. If both values are empty or missing, the task cannot start
because there is no association between the task and a worker to
perform the tasks. In this situation, you've defined work but haven't
defined what computer will do that work. If applicable, verify that
the workerGroup value assigned to the pipeline component is exactly
the same name and case as the workerGroup value that you configured
for Task Runner.
Reason 2:-
Another potential cause of this problem is that the endpoint and
access key provided to Task Runner is not the same as the AWS Data
Pipeline console or the computer where the AWS Data Pipeline CLI tools
are installed. You might have created new pipelines with no visible
errors, but Task Runner polls the wrong location due to the difference
in credentials, or polls the correct location with insufficient
permissions to identify and run the work specified by the pipeline
definition.