python2.7 missing standard dbm module when install by conda - python-2.7

I want to install python2.7 by conda as follows command:
conda create -n tensorflow python=2.7 anaconda
But it is missing of dbm module.
$ python
Python 2.7.15 | packaged by conda-forge | (default, Jul 2 2019, 00:39:44)
[GCC 7.3.0] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import dbm
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named dbm
>>> import Tkinter
>>>
Then I try to install python-gdbm suggestion by google and stackoverflow.
$ conda install -n tensorflow -c anaconda python-gdbm
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /public/home/miniconda2/envs/tensorflow
added / updated specs:
- python-gdbm
The following packages will be downloaded:
package | build
---------------------------|-----------------
certifi-2019.11.28 | py27_0 156 KB anaconda
python-gdbm-1.1 | py27_0 21 KB anaconda
------------------------------------------------------------
Total: 177 KB
The following NEW packages will be INSTALLED:
gdbm anaconda/linux-64::gdbm-1.12-0
python-gdbm anaconda/linux-64::python-gdbm-1.1-py27_0
The following packages will be UPDATED:
openssl conda-forge::openssl-1.1.1d-h516909a_0 --> anaconda::openssl-1.1.1-h7b6447c_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates conda-forge::ca-certificates-2019.11.~ --> anaconda::ca-certificates-2019.11.27-0
certifi conda-forge --> anaconda
Proceed ([y]/n)? y
Downloading and Extracting Packages
python-gdbm-1.1 | 21 KB | ################################################################################################################################ | 100%
certifi-2019.11.28 | 156 KB | ################################################################################################################################ | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Unfortunately, I still have the same error when import dbm.
Any help is much appreciated.
Thanks.

AFAIK, there are no Anaconda (or Conda Forge) Python 2.7 builds that support the dbm module for Linux (e.g., see this issue). The anaconda::python-gdbm package should provide the functionality, but the import will be:
import gdbm

Related

Ruamel.yaml.jinja2: typ "jinja2"not recognised on CentOS

I'm writing a script in python to update some YAML config files containing jinja2. I found this answer showing how to do it using ruamel.yaml and ruamel.yaml.jinja2 packages and it works absolutely fine on windows10 using this configuration:
$ python -V
Python 2.7.5
$ python -m pip list
[...]
ruamel.ordereddict 0.4.13
ruamel.yaml 0.15.94
ruamel.yaml.jinja2 0.2.2
[...]
and this code:
from ruamel.yaml import YAML
yamlLoader = YAML(typ='jinja2')
But when I try to use it on a CentOS virtual machine, which is the target environment for this script, I get this error:
File "/opt/salt/mig/cnamts_migrate.py", line 17, in <module>
yamlLoader = YAML(typ='jinja2')
File "/usr/lib64/python2.7/site-packages/ruamel/yaml/main.py", line 138, in __init__
'typ "{}"not recognised (need to install plug-in?)'.format(self.typ)
NotImplementedError: typ "jinja2"not recognised (need to install plug-in?)
I can't find any difference in neither Python configuration nor packages' version.
On CentOS VM:
$ python -V
Python 2.7.5
$ pip list
Package Version
---------------------------- -----------
pip 19.1
ruamel.ordereddict 0.4.13
ruamel.yaml 0.15.94
ruamel.yaml.jinja2 0.2.2
setuptools 41.0.1
This path
/usr/lib64/python2.7/site-packages/ruamel/yaml/main.py
in the error message gives me the impression that you are using a system wide Python installation. You should (IMHO even in a VM) use python virtualenv for any utility (and preferaby one per non-related utility). You don't show the output of pip for your CentOS machine, which is way more interesting than the one on your Windows box.
$ more /etc/centos-release
CentOS Linux release 7.3.1611 (Core)
$ /opt/python/3.7/bin/python -m venv /tmp/so-55900745
$ source /tmp/so-55900745/bin/activate
(so-55900745) $ pip install ruamel.yaml.jinja2
Collecting ruamel.yaml.jinja2
Downloading https://files.pythonhosted.org/packages/4f/b4/9676d4fa53d921f98f40dcda2ecfdb9fba2b68fbdccec3d9d4d2c87d96a7/ruamel.yaml.jinja2-0.2.2-py2.py3-none-any.whl
Collecting ruamel.yaml>=0.15.10 (from ruamel.yaml.jinja2)
Downloading https://files.pythonhosted.org/packages/bb/e3/8c06f90dab796bd5baf5da2482cf919bab3145389196814ec3180d4c7bd5/ruamel.yaml-0.15.94-cp37-cp37m-manylinux1_x86_64.whl (647kB)
100% |████████████████████████████████| 655kB 9.3MB/s
Installing collected packages: ruamel.yaml, ruamel.yaml.jinja2
Successfully installed ruamel.yaml-0.15.94 ruamel.yaml.jinja2-0.2.2
(so-55900745) $ pip list
Package Version
------------------ -------
pip 19.1
ruamel.yaml 0.15.94
ruamel.yaml.jinja2 0.2.2
setuptools 40.8.0
(so-55900745) $ python
Python 3.7.3 (default, Apr 3 2019, 11:33:06)
[GCC 4.8.5 20150623 (Red Hat 4.8.5-11)] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from ruamel.yaml import YAML
>>> yamlLoader = YAML(typ='jinja2')
>>> exit()
(so-55900745) $ deactivate
$ rm -rf /tmp/so-55900745/
$ virtualenv -p /opt/python/2.7/bin/python /tmp/so-55900745
Running virtualenv with interpreter /opt/python/2.7/bin/python
New python executable in /tmp/so-55900745/bin/python
Installing setuptools, pip, wheel...
done.
$ source /tmp/so-55900745/bin/activate
(so-55900745) $ pip install ruamel.yaml.jinja2
DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7.
Collecting ruamel.yaml.jinja2
Using cached https://files.pythonhosted.org/packages/4f/b4/9676d4fa53d921f98f40dcda2ecfdb9fba2b68fbdccec3d9d4d2c87d96a7/ruamel.yaml.jinja2-0.2.2-py2.py3-none-any.whl
Collecting ruamel.yaml>=0.15.10 (from ruamel.yaml.jinja2)
Downloading https://files.pythonhosted.org/packages/a2/59/e8cb144511e47e068efdb71a85f35d00b32fc5f05a9e9a17df265ec252b5/ruamel.yaml-0.15.94-cp27-cp27mu-manylinux1_x86_64.whl (600kB)
|████████████████████████████████| 604kB 2.0MB/s
Collecting ruamel.ordereddict; platform_python_implementation == "CPython" and python_version <= "2.7" (from ruamel.yaml>=0.15.10->ruamel.yaml.jinja2)
Downloading https://files.pythonhosted.org/packages/f3/2c/fa6d75dc459b371ed3b88fdbf8042785ce1655073c884fd97bdbb9f48e01/ruamel.ordereddict-0.4.13-cp27-cp27mu-manylinux1_x86_64.whl (99kB)
|████████████████████████████████| 102kB 12.7MB/s
Installing collected packages: ruamel.ordereddict, ruamel.yaml, ruamel.yaml.jinja2
Successfully installed ruamel.ordereddict-0.4.13 ruamel.yaml-0.15.94 ruamel.yaml.jinja2-0.2.2
(so-55900745) $ python
Python 2.7.15 (default, Aug 10 2018, 11:41:46)
[GCC 4.8.5 20150623 (Red Hat 4.8.5-11)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> from ruamel.yaml import YAML
>>> yamlLoader = YAML(typ='jinja2')
>>> exit()
(so-55900745) $ deactivate
I ran into the same error message. but with python3.6.
The fix for me was to pip instead of easy_install.
Here's the easy_install related output:
(env) $ easy_install -q ruamel.yaml.jinja2
(env) $ easy_install -q ruamel.yaml
(env) $ python
Python 3.6.7 (default, Oct 22 2018, 11:32:17)
[GCC 8.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from ruamel.yaml import YAML
>>> yamlLoader = YAML(typ='jinja2')
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "REDACTED/env/lib/python3.6/site-packages/ruamel.yaml-0.15.96-py3.6-linux-x86_64.egg/ruamel/yaml/main.py", line 138, in __init__
'typ "{}"not recognised (need to install plug-in?)'.format(self.typ)
NotImplementedError: typ "jinja2"not recognised (need to install plug-in?)
Here's the same thing installing with pip:
(env) $ pip -q install ruamel.yaml.jinja2
(env) $ pip -q install ruamel.yaml
(env) $ python
Python 3.6.7 (default, Oct 22 2018, 11:32:17)
[GCC 8.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from ruamel.yaml import YAML
>>> yamlLoader = YAML(typ='jinja2')
>>> print("¯\_(ツ)_/¯")
¯\_(ツ)_/¯
If you are using a setup.py in your project, check out Can I use `pip` instead of `easy_install` for `python setup.py install` dependency resolution?

Pip install giving SyntaxError in Anaconda

I installed anaconda2 over python 2.7 and i am on Windows 10.
when I am trying to use pip , Syntax error is coming. I am using basic cmd to access pip , even without the environment variable thing , it's not working .
Can anybody explain what am I doing wrong ?
Error:
C:\Users\Yash gupta\Anaconda2\Scripts>python
Python 2.7.13 |Anaconda 4.4.0 (64-bit)| (default, May 11 2017, 13:17:26) [MSC v.1500 64 bit (AMD64)] on win32
Type "help", "copyright", "credits" or "license" for more information.
Anaconda is brought to you by Continuum Analytics.
Please check out: http://continuum.io/thanks and https://anaconda.org
>>> pip install bs4
File "<stdin>", line 1
pip install bs4
^
SyntaxError: invalid syntax
>>>
you are using pip in python environment.
You must quit python and run pip install bs4 with the shell.
If you want to install the library only in a specific anaconda environment, lunch the source activate <yourEnv> command and then use pip install.

ImportError: No module named eventlet

I have installed eventlet library in python using : pip install eventlet. But when I tried to import eventlet this error occured:
$python
Python 2.7.10 (default, Oct 23 2015, 18:05:06)
[GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.5)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import eventlet
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named eventlet
I tried to install it again but I got this :
$pip install eventlet
Requirement already satisfied (use --upgrade to upgrade): eventlet in /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/eventlet-0.18.1-py3.5.egg
Requirement already satisfied (use --upgrade to upgrade): greenlet>=0.3 in /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/greenlet-0.4.9-py3.5-macosx-10.6-intel.egg (from eventlet)
How to rectify this error?
P.S : I am using Python 2.7
This question is not specific to Eventlet, it's just about managing multiple versions of Python on OSX.
Your pip command installed eventlet into /Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5, see version.
It means you actually have two Python versions installed: 2.7 and 3.5 and pip works with 3.5.
Your options:
(recommended) use separate virtualenv [1] for every project, explicitly specify python version when creating virtualenv using virtualenv --python=python2.7 /path/to/new/venv
run python3 and use eventlet in latest Python
run pip2 install eventlet
symlink pip to pip2 ln -snf $(which pip2) $(which pip)
[1] http://docs.python-guide.org/en/latest/dev/virtualenvs/
You may also use
$py -2 -m pip install eventlet
It worked for me in Windows 10.
$pip install eventlet
This worked for me in windows10

Can not import libxml2 and libxslt in Python 2.7 and CentOS 7

Can not import libxml2 and libxslt in Python 2.7 and CentOS 7.
But system says that these packages are installed:
Package libxml2-2.9.1-5.el7_1.2.x86_64 already installed and latest version
Package libxml2-devel-2.9.1-5.el7_1.2.x86_64 already installed and latest version
Package libxslt-1.1.28-5.el7.x86_64 already installed and latest version
Package libxslt-devel-1.1.28-5.el7.x86_64 already installed and latest version
But can not import in Python2.7
Python 2.7.5 (default, Jun 24 2015, 00:41:19)
[GCC 4.8.3 20140911 (Red Hat 4.8.3-9)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import libxml2
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named libxml2
>>> import libxslt
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named libxslt
>>>
libxml2 install step
yum groupinstall "Development Tools"
yum install python-devel.x86_64
rpmbuild -ba /usr/src/redhat/SPECS/libxml2.spec (this might not be required.)
##go to RPMS/x86_64/
rpm -Uvh libxml2-python-2.7.8-1.x86_64.rpm --nodeps
===================================================================
libxslt install step
wget http://xmlsoft.org/sources/libxslt-1.1.28.tar.gz
cd libxslt-1.1.28
./configure --with-python=/usr/bin/python2.7
make
make install
========================================

Confusion regarding python 2.6/2.7 package installations

I have a Redhat 6 box which originally had python 2.6 installed on it (invoked by /usr/bin/python). A few days ago I installed 2.7.10 (invoked by /usr/local/bin/python or simply python).
Earlier today I installed pip using sudo easy_install pip. The result of whereis pip is pip: /usr/bin/pip2.6 /usr/bin/pip
Then I wanted to install the pandas package by running sudo pip install pandas. It reported success but import pandas produces an error for both versions of python:
myPrompt 733] python
Python 2.7.10 (default, Jul 16 2015, 14:41:11)
[GCC 4.4.7 20120313 (Red Hat 4.4.7-11)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import pandas
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named pandas
>>> exit()
myPrompt 734] /usr/bin/python
Python 2.6.6 (r266:84292, Nov 21 2013, 10:50:32)
[GCC 4.4.7 20120313 (Red Hat 4.4.7-4)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import pandas
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
ImportError: No module named pandas
>>> exit()
myPrompt 735] pip install pandas
Traceback (most recent call last):
File "/usr/bin/pip", line 5, in <module>
from pkg_resources import load_entry_point
File "/usr/lib/python2.6/site-packages/pkg_resources.py", line 2655, in <module>
working_set.require(__requires__)
File "/usr/lib/python2.6/site-packages/pkg_resources.py", line 648, in require
needed = self.resolve(parse_requirements(requirements))
File "/usr/lib/python2.6/site-packages/pkg_resources.py", line 546, in resolve
raise DistributionNotFound(req)
pkg_resources.DistributionNotFound: pip==7.1.0
myPrompt 736] sudo pip install pandas
Enter PASSCODE:
Requirement already satisfied (use --upgrade to upgrade): pandas in /usr/lib64/python2.6/site-packages
Requirement already satisfied (use --upgrade to upgrade): python-dateutil in /usr/lib/python2.6/site-packages (from pandas)
Requirement already satisfied (use --upgrade to upgrade): pytz>=2011k in /usr/lib/python2.6/site-packages (from pandas)
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.7.0 in /usr/lib64/python2.6/site-packages (from pandas)
Requirement already satisfied (use --upgrade to upgrade): six>=1.5 in /usr/lib/python2.6/site-packages (from python-dateutil->pandas)
So there is some sort of confusion with pip configuration and how packages get installed. How can I untangle this? Do I need to reinstall pip?
Ultimately, I don't care about python 2.6 and only want to work with 2.7
Thx
Looks like the reason was that I installed the packages as root. Doing
sudo chmod -R ugo+rX /usr/local/lib/python2.7/site-packages
fixed the problem
For reference, this can happen when you have multiple Python installations, for example via brew. In that case remove one:
brew remove python --force
This one fixed for me.
This case can be fixed using the steps provided in the following answer: Easy_install and pip broke: pkg_resources.DistributionNotFound: distribute==0.6.36
It simply replaces the current pip install (which refers to the new/wrong python environment) with a fresh/correct one.