I created a permanent Big Query table that reads some csv files from a Cloud Storage Bucket sharing the same prefix name (filename*.csv) and the same schema.
There are some csvs anyway that make fail BigQuery queries with a message like the following one: "Error while reading table: xxxx.xxxx.xxx, error message: CSV table references column position 5, but line starting at position:10 contains only 2 columns.
Moving all the csvs one-by-one from the bucket I devised the one responsible for that.
This csv file doesn't have 10 lines...
I found this ticket BigQuery error when loading csv file from Google Cloud Storage, so I thought the issue was having an empty line at the end. But also others csvs in my bucket do, so this can't be the reason.
On the other hand this csv is the only one with content type text/csv; charset=utf-8, all the others being text/csv,application/vnd.ms-excel,application/octet-stream.
Furthermore downloading this csv to my local Windows machine and uploading it againt to Cloud Storage, content type is automatically converted to application/vnd.ms-excel.
Then even with the missing line Big Query can then query the permanent table based on filename*.csvs.
Is it possible that BigQuery had issues querying csvs with UTF-8 encoding, or is it just coincidence?
Use Google Cloud Dataprep to load your csv file. Once the file is loaded, analyze the data and clean it if requires.
Once all the rows are cleaned, you can then sink that data in BQ.
Dataprep is GUI based ETL tool and it runs a dataflow job internally.
Do let me know if any more clarification is required.
Just to remark the issue, the CSV file had gzip as encoding which was the reason that BigQuery doesn't interpret as a CSV file.
According to documentation BigQuery expects CSV data to be UTF-8 encoded:
"encoding": "UTF-8"
In addition, since this issue is relate to the metadata of the files in GCS you can edit the metadata directly from the Console.
Related
We are currently using Apache sqoop once daily to export an oracle DB table containing a CLOB column into HDFS. As part of this we first map the CLOB column to java string(using --map-column-java) and have the imported data to be saved in the format of parquet. We have this scheduled as an oozie workflow.
There is a plan to move from apache hive to bigquery. I am not able to find a way to get this table into bigquery and would like help on the best approach to get this done.
If we go withreal time streaming from oracle DB into bigquery using google datastream, can you tell me if the clob column will get streamed correctly, as it has some malformed xml data (close to xml structure but might have some discrepancies in obeying the structure).
Another option i read was to have the table extracted as a csv file,and have it transferred to GCS and have the bigquery table refer it there.But since mydata in CLOB column is very large and is wild with multiple commas and special chsracters in between, i think there will be issues with parsing or exporting. Any options to do it in parquet or ORC formats?
The preferred approach is to have a scheduled batch upload performed daily from oracle to bigquery. Appreciate any inputs on how to achieve the same.
We can convert CLOB data from Oracle DB to desired format like ORC, Parquet, TSV, Avro files through Enterprise Flexter.
Also, you can refer to this on how to ingest on-premises Oracle data with Google Cloud Dataflow via JDBC, using the Hybrid Data Pipeline On-Premises Connector.
For your other query moving from apache hive to bigquery-
The fastest way to import to BQ is using GCP resources. Dataflow is a scalable solution to read and write. Dataproc is also another option that is more flexible and you can use more open source stacks to read from the Hive cluster.
You can also use this Dataflow template, which would require a connection to be established directly between the Dataflow workers and the Apache Hive nodes.
There is also a plugin for moving data from Hive into BigQuery which utilises GCS as a temporary storage and uses BigQuery Storage API to move data to BigQuery.
You can also use Cloud SQL to migrate your Hive data to BigQuery.
I am trying to copy table from spanner to big query. I have created two dataflow. One which copies from spanner to text file and other one that imports text file into bigquery.
Table has a column which has JSON string as a value. Issue is seen when dataflow job runs while importing from text file to bigquery. Job throws below error :
INVALD JSON: :1:38 Expected eof but found, "602...
Is there anyway I can exclude this column while copying or any way I can copy JSON object as it is? I tried excluding this column in schema file but it did not help.
Thank you!
Looking at https://cloud.google.com/dataflow/docs/guides/templates/provided-batch#cloud-spanner-to-cloud-storage-text there are options on BigQuery import jobs that would allow to skip columns, neither Cloud Spanner options that would skip a column when extracting.
I think your best shot is to write a custom processor that will drop the column, similar to Cleaning data in CSV files using dataflow.
it's more complicated but you can also try DataPrep: http://cloud/dataprep/docs/html/Drop-Transform_57344635. It should be possible to run DataPrep jobs as a DataFlow template.
I have a BigQuery table and I want to update the content of few rows it from a reference CSV file. This CSV file is uploaded to Google cloud storage bucket.
When you use external table from storage, you can only read the CSV, not update them.
However, you can load you CSV into a BigQuery native table, perform the update with DML, and then export the table to CSV. That only works if you have only one CSV.
If you have several CSV files, you can, at least, print the pseudo column _FILE_NAME to identify the files where you need to perform the change. But the change will have to be performed manually or with the previous solution (native table)
I am trying to upload a compressed file from my GCS bucket into BigQuery.
In the new UI it is not clear how should I specify to uncompress the file.
I get an error specifying as if the gs://bucket/folder/file.7z is a .csv file.
Any help?
Unfortunately, .7z files are not supported by Bigquery, only gzip files and the decompression process is made automatically, after selecting the data format and creating the table.
If you consider that BigQuery should accept 7z files too, you could fill a feature request so the BigQuery engineers have it in mind for further releases.
For a project we've inherited we have a large-ish set of legacy data, 600GB, that we would like to archive, but still have available if need be.
We're looking at using the AWS data pipeline to move the data from the database to be in S3, according to this tutorial.
https://docs.aws.amazon.com/datapipeline/latest/DeveloperGuide/dp-object-copyactivity.html
However, we would also like to be able to retrieve a 'row' of that data if we find the application is actually using a particular row.
Apparently that tutorial puts all of the data from a table into a single massive CSV file.
Is it possible to split the data up into separate files, with 100 rows of data in each file, and giving each file a predictable file name, such as:
foo_data_10200_to_10299.csv
So that if we realise we need to retrieve row 10239, we can know which file to retrieve, and download just that, rather than all 600GB of the data.
If your data is stored in CSV format in Amazon S3, there are a couple of ways to easily retrieve selected data:
Amazon Athena is an interactive query service that makes it easy to analyze data in Amazon S3 using standard SQL.
S3 Select (currently in preview) enables applications to retrieve only a subset of data from an object by using simple SQL expressions.
These work on compressed (gzip) files too, to save storage space.
See:
Welcome - Amazon Athena
S3 Select and Glacier Select – Retrieving Subsets of Objects