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I have an issue that seems to have no straight forward solution in Keras.
My server runs on ubuntu 14.04, keras with backend tensorflow.
Here's the issue:
I have two input tenors of the shape: Input(shape=(30,125,1)), each of them is fed to a cascade of three layers below:
CNN1 = Conv2D(filters = 8, kernel_size = (1,64) , padding = "same" , activation = "relu" )
CNN2 = Conv2D(filters = 8, kernel_size = (8,1) , padding = "same" , activation = "relu" )
pool = MaxPooling2D((2, 2))
Each of the obtained output tensors for respective inputs is of shape (None, 15, 62, 8). Now, I wish to add each of the (15,62) matrix for both inputs for each filter and get an output of dimension again (None, 15, 62, 8).
I tried with the following lines of code using Lambda layer but it throws an error.
from keras import backend as K
from keras.layers import Lambda
def myadd(x):
increment = x[1]
result = K.update_add(x[0], increment)
return result
in_1 = Input(shape=(30,125,1))
in_1CNN1 = CNN1(in_1)
in_1CNN2 = CNN2(in_1CNN1)
in_1pool = pool(in_1CNN2)
in_2 = Input(shape=(30,125,1))
in_2CNN1 = CNN1(in_2)
in_2CNN2 = CNN2(in_2CNN1)
in_2pool = pool(in_2CNN2)
y1 =y1.astype(np.float32) # an input regression label array of shape (numsamples,1) loaded from a mat file
out1 = Lambda(myadd, output_shape=(None, 15, 62, 8))([in_1pool,in_2pool])
a= keras.layers.Flatten()(out1)
pre1 = Dense(1000, activation='sigmoid')(a)
pre2 =Dropout(0.2)(pre1)
predictions = Dense(1, activation='sigmoid')(pre2)
model = Model(inputs=[in_1,in_2], outputs=predictions)
model.compile(optimizer='sgd',loss='mean_squared_error')
model.fit([inputdata1,inputdata2], y1, epochs=20, validation_split=0.5)
#inputdata1, inputdata2 are arrays loaded from a mat file and are each of shape (5169, 30, 125, 1)
The error is highlighted below:
Traceback (most recent call last):
File "keras_workshop/keras_multipleinputs_multiple CNN.py", line 225, in <module>
out1 = Lambda(myadd, output_shape=(None, 15, 62, 8))([in_1pool,in_2pool])
File "/home/tharun/anaconda2/lib/python2.7/site-packages/keras/engine/topology.py", line 603, in __call__
output = self.call(inputs, **kwargs)
File "/home/tharun/anaconda2/lib/python2.7/site-packages/keras/layers/core.py", line 651, in call
return self.function(inputs, **arguments)
File "keras_workshop/keras_multipleinputs_multiple CNN.py", line 75, in myadd
result = K.update_add(x[0], increment)
File "/home/tharun/anaconda2/lib/python2.7/site-packages/keras/backend/tensorflow_backend.py", line 958, in update_add
return tf.assign_add(x, increment)
File "/home/tharun/anaconda2/lib/python2.7/site-packages/tensorflow/python/ops/state_ops.py", line 245, in assign_add
return ref.assign_add(value)
AttributeError: 'Tensor' object has no attribute 'assign_add'
Try the Add() layer or the add() function that Keras provides.
Add
keras.layers.Add()
Layer that adds a list of inputs.
It takes as input a list of tensors, all of the same shape, and returns a single tensor (also of the same shape).
add
keras.layers.add(inputs)
Functional interface to the Add layer.
Arguments
inputs: A list of input tensors (at least 2).
**kwargs: Standard layer keyword arguments.
Returns
A tensor, the sum of the inputs.
I am currently trying to implement a RNN for regression.
I need to create a neural network capable of converting audio samples into vector of mfcc feature. I've already know what the feature for each audio samples is, so the task it self is to create a neural network that is capable of converting a list of audio samples in to the desired MFCC feature.
The second problem I am facing is that since the audio files I am sampling has different length, will the list with the audio sample also have different length, which would cause problem with the number of input I need to feed into to the neural network. I found this post on how to handle variable sequence length, and tried to incorporate into my implementation of a RNN, but seem to not be able to get a lot of errors for unexplainable reasons..
Could anyone see what is going wrong with my implementation?
Here is the code:
def length(sequence): ##Zero padding to fit the max lenght... Question whether that is a good idea.
used = tf.sign(tf.reduce_max(tf.abs(sequence), reduction_indices=2))
length = tf.reduce_sum(used, reduction_indices=1)
length = tf.cast(length, tf.int32)
return length
def cost(output, target):
# Compute cross entropy for each frame.
cross_entropy = target * tf.log(output)
cross_entropy = -tf.reduce_sum(cross_entropy, reduction_indices=2)
mask = tf.sign(tf.reduce_max(tf.abs(target), reduction_indices=2))
cross_entropy *= mask
# Average over actual sequence lengths.
cross_entropy = tf.reduce_sum(cross_entropy, reduction_indices=1)
cross_entropy /= tf.reduce_sum(mask, reduction_indices=1)
return tf.reduce_mean(cross_entropy)
def last_relevant(output):
max_length = int(output.get_shape()[1])
relevant = tf.reduce_sum(tf.mul(output, tf.expand_dims(tf.one_hot(length, max_length), -1)), 1)
return relevant
files_train_path = [dnn_train+f for f in listdir(dnn_train) if isfile(join(dnn_train, f))]
files_test_path = [dnn_test+f for f in listdir(dnn_test) if isfile(join(dnn_test, f))]
files_train_name = [f for f in listdir(dnn_train) if isfile(join(dnn_train, f))]
files_test_name = [f for f in listdir(dnn_test) if isfile(join(dnn_test, f))]
os.chdir(dnn_train)
train_name,train_data = generate_list_of_names_data(files_train_path)
train_data, train_names, train_output_data, train_class_output = load_sound_files(files_train_path,train_name,train_data)
max_length = 0 ## Used for variable sequence input
for element in train_data:
if element.size > max_length:
max_length = element.size
NUM_EXAMPLES = len(train_data)/2
test_data = train_data[NUM_EXAMPLES:]
test_output = train_output_data[NUM_EXAMPLES:]
train_data = train_data[:NUM_EXAMPLES]
train_output = train_output_data[:NUM_EXAMPLES]
print("--- %s seconds ---" % (time.time() - start_time))
#----------------------------------------------------------------------#
#----------------------------Main--------------------------------------#
### Tensorflow neural network setup
batch_size = None
sequence_length_max = max_length
input_dimension=1
data = tf.placeholder(tf.float32,[batch_size,sequence_length_max,input_dimension])
target = tf.placeholder(tf.float32,[None,14])
num_hidden = 24 ## Hidden layer
cell = tf.nn.rnn_cell.LSTMCell(num_hidden,state_is_tuple=True) ## Long short term memory
output, state = tf.nn.dynamic_rnn(cell, data, dtype=tf.float32,sequence_length = length(data)) ## Creates the Rnn skeleton
last = last_relevant(output)#tf.gather(val, int(val.get_shape()[0]) - 1) ## Appedning as last
weight = tf.Variable(tf.truncated_normal([num_hidden, int(target.get_shape()[1])]))
bias = tf.Variable(tf.constant(0.1, shape=[target.get_shape()[1]]))
prediction = tf.nn.softmax(tf.matmul(last, weight) + bias)
cross_entropy = cost(output,target)# How far am I from correct value?
optimizer = tf.train.AdamOptimizer() ## TensorflowOptimizer
minimize = optimizer.minimize(cross_entropy)
mistakes = tf.not_equal(tf.argmax(target, 1), tf.argmax(prediction, 1))
error = tf.reduce_mean(tf.cast(mistakes, tf.float32))
## Training ##
init_op = tf.initialize_all_variables()
sess = tf.Session()
sess.run(init_op)
batch_size = 1000
no_of_batches = int(len(train_data)/batch_size)
epoch = 5000
for i in range(epoch):
ptr = 0
for j in range(no_of_batches):
inp, out = train_data[ptr:ptr+batch_size], train_output[ptr:ptr+batch_size]
ptr+=batch_size
sess.run(minimize,{data: inp, target: out})
print "Epoch - ",str(i)
incorrect = sess.run(error,{data: test_data, target: test_output})
print('Epoch {:2d} error {:3.1f}%'.format(i + 1, 100 * incorrect))
sess.close()
Error message:
Traceback (most recent call last):
File "tensorflow_test.py", line 177, in <module>
last = last_relevant(output)#tf.gather(val, int(val.get_shape()[0]) - 1) ## Appedning as last
File "tensorflow_test.py", line 132, in last_relevant
relevant = tf.reduce_sum(tf.mul(output, tf.expand_dims(tf.one_hot(length, max_length), -1)), 1)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/array_ops.py", line 2778, in one_hot
name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/gen_array_ops.py", line 1413, in _one_hot
axis=axis, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/op_def_library.py", line 454, in apply_op
as_ref=input_arg.is_ref)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 621, in convert_to_tensor
ret = conversion_func(value, dtype=dtype, name=name, as_ref=as_ref)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/constant_op.py", line 180, in _constant_tensor_conversion_function
return constant(v, dtype=dtype, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/constant_op.py", line 163, in constant
tensor_util.make_tensor_proto(value, dtype=dtype, shape=shape))
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/tensor_util.py", line 421, in make_tensor_proto
tensor_proto.string_val.extend([compat.as_bytes(x) for x in proto_values])
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/util/compat.py", line 45, in as_bytes
(bytes_or_text,))
TypeError: Expected binary or unicode string, got <function length at 0x7f51a7a3ede8>
Edit:
Changing the tf.one_hot(lenght(output),max_length) gives me this error message:
Traceback (most recent call last):
File "tensorflow_test.py", line 184, in <module>
cross_entropy = cost(output,target)# How far am I from correct value?
File "tensorflow_test.py", line 121, in cost
cross_entropy = target * tf.log(output)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/math_ops.py", line 754, in binary_op_wrapper
return func(x, y, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/math_ops.py", line 903, in _mul_dispatch
return gen_math_ops.mul(x, y, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/gen_math_ops.py", line 1427, in mul
result = _op_def_lib.apply_op("Mul", x=x, y=y, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/op_def_library.py", line 703, in apply_op
op_def=op_def)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 2312, in create_op
set_shapes_for_outputs(ret)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 1704, in set_shapes_for_outputs
shapes = shape_func(op)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/math_ops.py", line 1801, in _BroadcastShape
% (shape_x, shape_y))
ValueError: Incompatible shapes for broadcasting: (?, 14) and (?, 138915, 24)
tf.one_hot(length, ...)
here length is a function, not a tensor. Try length(something) instead.
I am currently trying to make a RNN network for regression purposes capable of taking in an arbitraty number of samples and output a 14 length feature vector using tensorflow.
The network isn't running properly at the moment, for which I am trying to debug the issue.. Here is the code:
def length(sequence): ##Zero padding to fit the max lenght... Question whether that is a good idea.
used = tf.sign(tf.reduce_max(tf.abs(sequence), reduction_indices=2))
length = tf.reduce_sum(used, reduction_indices=1)
length = tf.cast(length, tf.int32)
return length
def cost(output, target):
# Compute cross entropy for each frame.
print output
cross_entropy = target * tf.log(output)
print "Hello world"
cross_entropy = -tf.reduce_sum(cross_entropy, reduction_indices=2)
mask = tf.sign(tf.reduce_max(tf.abs(target), reduction_indices=2))
cross_entropy *= mask
# Average over actual sequence lengths.
cross_entropy = tf.reduce_sum(cross_entropy, reduction_indices=1)
cross_entropy /= tf.reduce_sum(mask, reduction_indices=1)
return tf.reduce_mean(cross_entropy)
def last_relevant(output):
max_length = int(output.get_shape()[1])
relevant = tf.reduce_sum(tf.mul(output, tf.expand_dims(tf.one_hot(length(output), max_length), -1)), 1)
return relevant
files_train_path = [dnn_train+f for f in listdir(dnn_train) if isfile(join(dnn_train, f))]
files_test_path = [dnn_test+f for f in listdir(dnn_test) if isfile(join(dnn_test, f))]
files_train_name = [f for f in listdir(dnn_train) if isfile(join(dnn_train, f))]
files_test_name = [f for f in listdir(dnn_test) if isfile(join(dnn_test, f))]
os.chdir(dnn_train)
train_name,train_data = generate_list_of_names_data(files_train_path)
train_data, train_names, train_output_data, train_class_output = load_sound_files(files_train_path,train_name,train_data)
max_length = 0 ## Used for variable sequence input
for element in train_data:
if element.size > max_length:
max_length = element.size
NUM_EXAMPLES = len(train_data)/2
test_data = train_data[NUM_EXAMPLES:]
test_output = train_output_data[NUM_EXAMPLES:]
train_data = train_data[:NUM_EXAMPLES]
train_output = train_output_data[:NUM_EXAMPLES]
print("--- %s seconds ---" % (time.time() - start_time))
#----------------------------------------------------------------------#
#----------------------------Main--------------------------------------#
### Tensorflow neural network setup
batch_size = None
sequence_length_max = max_length
input_dimension=1
data = tf.placeholder(tf.float32,[batch_size,sequence_length_max,input_dimension])
target = tf.placeholder(tf.float32,[None,14])
num_hidden = 24 ## Hidden layer
cell = tf.nn.rnn_cell.LSTMCell(num_hidden,state_is_tuple=True) ## Long short term memory
output, state = tf.nn.dynamic_rnn(cell, data, dtype=tf.float32,sequence_length = length(data)) ## Creates the Rnn skeleton
last = last_relevant(output)#tf.gather(val, int(val.get_shape()[0]) - 1) ## Appedning as last
weight = tf.Variable(tf.truncated_normal([num_hidden, int(target.get_shape()[1])]))
bias = tf.Variable(tf.constant(0.1, shape=[target.get_shape()[1]]))
prediction = tf.nn.softmax(tf.matmul(last, weight) + bias)
cross_entropy = cost(output,target)# How far am I from correct value?
optimizer = tf.train.AdamOptimizer() ## TensorflowOptimizer
minimize = optimizer.minimize(cross_entropy)
mistakes = tf.not_equal(tf.argmax(target, 1), tf.argmax(prediction, 1))
error = tf.reduce_mean(tf.cast(mistakes, tf.float32))
## Training ##
init_op = tf.initialize_all_variables()
sess = tf.Session()
sess.run(init_op)
batch_size = 1000
no_of_batches = int(len(train_data)/batch_size)
epoch = 5000
for i in range(epoch):
ptr = 0
for j in range(no_of_batches):
inp, out = train_data[ptr:ptr+batch_size], train_output[ptr:ptr+batch_size]
ptr+=batch_size
sess.run(minimize,{data: inp, target: out})
print "Epoch - ",str(i)
incorrect = sess.run(error,{data: test_data, target: test_output})
print('Epoch {:2d} error {:3.1f}%'.format(i + 1, 100 * incorrect))
sess.close()
The code doesn't fully execute due to an error in the cross_entropy function.
Tensor("RNN/transpose:0", shape=(?, 138915, 24), dtype=float32)
Traceback (most recent call last):
File "tensorflow_test.py", line 186, in <module>
cross_entropy = cost(output,target)# How far am I from correct value?
File "tensorflow_test.py", line 122, in cost
cross_entropy = target * tf.log(output)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/math_ops.py", line 754, in binary_op_wrapper
return func(x, y, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/math_ops.py", line 903, in _mul_dispatch
return gen_math_ops.mul(x, y, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/gen_math_ops.py", line 1427, in mul
result = _op_def_lib.apply_op("Mul", x=x, y=y, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/op_def_library.py", line 703, in apply_op
op_def=op_def)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 2312, in create_op
set_shapes_for_outputs(ret)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 1704, in set_shapes_for_outputs
shapes = shape_func(op)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/math_ops.py", line 1801, in _BroadcastShape
% (shape_x, shape_y))
ValueError: Incompatible shapes for broadcasting: (?, 14) and (?, 138915, 24)
It seem to me that the output I am receiving from the RNN has a quite high dimensionality. I was only expecting a vector with 14 elements so a 1 dimensional vector. But somehow am I ending up with quite a large dimensionality? Why? I guess something in my setup of the neural network must be incorrect.
Output of dynamic_rnn is of shape [batch_size, num_steps, dim_hidden]. In your case, number of timesteps in the RNN is apparently 138915.
I'm a little new to scikit and ML. I'm trying to train an Adaboost classifier for one vs Rest classification. I'm using the following code
# To Read Training data set
test = pd.read_csv("train.csv", header=0, delimiter=",", \
quoting=1, error_bad_lines=False)
num_reviews = len(test["text"])
clean_train_reviews = []
catlist=[]
for i in xrange(0,num_reviews):
data=processText(test["text"][i])
data1=test["category"][i]
clean_train_reviews.append(data)
catlist.append(data1.split('.'))
# To read test dataset
test = pd.read_csv("test.csv", header=0, delimiter=",", \
quoting=1, error_bad_lines=False)
num_reviews = len(test["text"])
clean_test_reviews = []
for i in xrange(0,num_reviews):
data=processText(test["text"][i])
clean_test_reviews.append(data)
X_test=np.array(clean_test_reviews)
lb = preprocessing.MultiLabelBinarizer()
Y = lb.fit_transform(catlist)
classifier = Pipeline([
('vectorizer', CountVectorizer(ngram_range=(1,2), max_features=1500,min_df=4)),
('tfidf', TfidfTransformer()),
('chi2', SelectKBest(chi2, k=200)),
('clf', OneVsRestClassifier(AdaBoostClassifier()))])
classifier.fit(clean_train_reviews, Y)
predicted = classifier.predict(X_test)
I use a pipeline, where text is inserted as clean_train_reviews and Y is the class (multi-Label, N = 10). Textual features are extracted in the pipeline using TfidfVectorizer() and selected using Chi squared feature selection method. Adaboost classifiers give: ValueError: bad input shape (1000, 10)
File "<ipython-input-10-9dbc8b18e6b8>", line 1, in <module>
runfile('C:/Users/Administrator/Desktop/nincymiss/adaboost.py', wdir='C:/Users/Administrator/Desktop/nincymiss')
File "C:\Python27\lib\site-packages\spyderlib\widgets\externalshell\sitecustomize.py", line 601, in runfile
execfile(filename, namespace)
File "C:\Python27\lib\site-packages\spyderlib\widgets\externalshell\sitecustomize.py", line 66, in execfile
exec(compile(scripttext, filename, 'exec'), glob, loc)
File "C:/Users/Administrator/Desktop/nincymiss/adaboost.py", line 179, in <module>
classifier.fit(clean_train_reviews, Y)
File "C:\Python27\lib\site-packages\sklearn\pipeline.py", line 164, in fit
Xt, fit_params = self._pre_transform(X, y, **fit_params)
File "C:\Python27\lib\site-packages\sklearn\pipeline.py", line 145, in _pre_transform
Xt = transform.fit_transform(Xt, y, **fit_params_steps[name])
File "C:\Python27\lib\site-packages\sklearn\base.py", line 458, in fit_transform
return self.fit(X, y, **fit_params).transform(X)
File "C:\Python27\lib\site-packages\sklearn\feature_selection\univariate_selection.py", line 322, in fit
X, y = check_X_y(X, y, ['csr', 'csc'])
File "C:\Python27\lib\site-packages\sklearn\utils\validation.py", line 515, in check_X_y
y = column_or_1d(y, warn=True)
File "C:\Python27\lib\site-packages\sklearn\utils\validation.py", line 551, in column_or_1d
raise ValueError("bad input shape {0}".format(shape))
ValueError: bad input shape (1000, 10)
This is because feature selection does not work as you'd expect for multilabel problems. You can try the following which will select the 'best' features for each label separately.
classifier = Pipeline([
('vectorizer', CountVectorizer(ngram_range=(1,2), max_features=1500, min_df=4)),
('tfidf', TfidfTransformer()),
('chi2', SelectKBest(chi2, k=200)),
('clf', AdaBoostClassifier())])
clf = OneVsRestClassifier(classifier)
Hi I am trying to run a conv. neural network addapted from MINST2 tutorial in tensorflow.
I am having the following error, but i am not sure what is going on:
W tensorflow/core/framework/op_kernel.cc:909] Invalid argument: Shape mismatch in tuple component 0. Expected [784], got [6272]
W tensorflow/core/framework/op_kernel.cc:909] Invalid argument: Shape mismatch in tuple component 0. Expected [784], got [6272]
Traceback (most recent call last):
File "4_Treino_Rede_Neural.py", line 161, in <module>
train_accuracy = accuracy.eval(feed_dict={keep_prob: 1.0})
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 555, in eval
return _eval_using_default_session(self, feed_dict, self.graph, session)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 3498, in _eval_using_default_session
return session.run(tensors, feed_dict)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 372, in run
run_metadata_ptr)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 636, in _run
feed_dict_string, options, run_metadata)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 708, in _do_run
target_list, options, run_metadata)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/client/session.py", line 728, in _do_call
raise type(e)(node_def, op, message)
tensorflow.python.framework.errors.OutOfRangeError: RandomShuffleQueue '_0_input/shuffle_batch/random_shuffle_queue' is closed and has insufficient elements (requested 100, current size 0)
[[Node: input/shuffle_batch = QueueDequeueMany[_class=["loc:#input/shuffle_batch/random_shuffle_queue"], component_types=[DT_FLOAT, DT_INT32], timeout_ms=-1, _device="/job:localhost/replica:0/task:0/cpu:0"](input/shuffle_batch/random_shuffle_queue, input/shuffle_batch/n)]]
Caused by op u'input/shuffle_batch', defined at:
File "4_Treino_Rede_Neural.py", line 113, in <module>
x, y_ = inputs(train=True, batch_size=FLAGS.batch_size, num_epochs=FLAGS.num_epochs)
File "4_Treino_Rede_Neural.py", line 93, in inputs
min_after_dequeue=1000)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/training/input.py", line 779, in shuffle_batch
dequeued = queue.dequeue_many(batch_size, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/data_flow_ops.py", line 400, in dequeue_many
self._queue_ref, n=n, component_types=self._dtypes, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/gen_data_flow_ops.py", line 465, in _queue_dequeue_many
timeout_ms=timeout_ms, name=name)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/ops/op_def_library.py", line 704, in apply_op
op_def=op_def)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 2260, in create_op
original_op=self._default_original_op, op_def=op_def)
File "/usr/local/lib/python2.7/dist-packages/tensorflow/python/framework/ops.py", line 1230, in __init__
self._traceback = _extract_stack()
My program is:
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os.path
import time
import numpy as np
import tensorflow as tf
# Basic model parameters as external flags.
flags = tf.app.flags
FLAGS = flags.FLAGS
flags.DEFINE_integer('num_epochs', 2, 'Number of epochs to run trainer.')
flags.DEFINE_integer('batch_size', 100, 'Batch size.')
flags.DEFINE_string('train_dir', '/root/data', 'Directory with the training data.')
#flags.DEFINE_string('train_dir', '/root/data2', 'Directory with the training data.')
# Constants used for dealing with the files, matches convert_to_records.
TRAIN_FILE = 'train.tfrecords'
VALIDATION_FILE = 'validation.tfrecords'
# Set-up dos pacotes
sess = tf.InteractiveSession()
def read_and_decode(filename_queue):
reader = tf.TFRecordReader()
_, serialized_example = reader.read(filename_queue)
features = tf.parse_single_example(
serialized_example,
# Defaults are not specified since both keys are required.
features={
'image_raw': tf.FixedLenFeature([], tf.string),
'label': tf.FixedLenFeature([], tf.int64),
})
# Convert from a scalar string tensor (whose single string has
# length mnist.IMAGE_PIXELS) to a uint8 tensor with shape
# [mnist.IMAGE_PIXELS].
image = tf.decode_raw(features['image_raw'], tf.uint8)
image.set_shape([784])
# OPTIONAL: Could reshape into a 28x28 image and apply distortions
# here. Since we are not applying any distortions in this
# example, and the next step expects the image to be flattened
# into a vector, we don't bother.
# Convert from [0, 255] -> [-0.5, 0.5] floats.
image = tf.cast(image, tf.float32) * (1. / 255) - 0.5
# Convert label from a scalar uint8 tensor to an int32 scalar.
label = tf.cast(features['label'], tf.int32)
return image, label
def inputs(train, batch_size, num_epochs):
"""Reads input data num_epochs times.
Args:
train: Selects between the training (True) and validation (False) data.
batch_size: Number of examples per returned batch.
num_epochs: Number of times to read the input data, or 0/None to
train forever.
Returns:
A tuple (images, labels), where:
* images is a float tensor with shape [batch_size, 30,26,1]
in the range [-0.5, 0.5].
* labels is an int32 tensor with shape [batch_size] with the true label,
a number in the range [0, char letras).
Note that an tf.train.QueueRunner is added to the graph, which
must be run using e.g. tf.train.start_queue_runners().
"""
if not num_epochs: num_epochs = None
filename = os.path.join(FLAGS.train_dir,
TRAIN_FILE if train else VALIDATION_FILE)
with tf.name_scope('input'):
filename_queue = tf.train.string_input_producer(
[filename], num_epochs=num_epochs)
# Even when reading in multiple threads, share the filename
# queue.
image, label = read_and_decode(filename_queue)
# Shuffle the examples and collect them into batch_size batches.
# (Internally uses a RandomShuffleQueue.)
# We run this in two threads to avoid being a bottleneck.
images, sparse_labels = tf.train.shuffle_batch(
[image, label], batch_size=batch_size, num_threads=2,
capacity=1000 + 3 * batch_size,
# Ensures a minimum amount of shuffling of examples.
min_after_dequeue=1000)
return images, sparse_labels
def weight_variable(shape):
initial = tf.truncated_normal(shape, stddev=0.1)
return tf.Variable(initial)
def bias_variable(shape):
initial = tf.constant(0.1, shape=shape)
return tf.Variable(initial)
def conv2d(x, W):
return tf.nn.conv2d(x, W, strides=[1, 1, 1, 1], padding='SAME')
def max_pool_2x2(x):
return tf.nn.max_pool(x, ksize=[1, 2, 2, 1],
strides=[1, 2, 2, 1], padding='SAME')
#Variaveis
x, y_ = inputs(train=True, batch_size=FLAGS.batch_size, num_epochs=FLAGS.num_epochs)
#onehot_y_ = tf.one_hot(y_, 36, dtype=tf.float32)
#y_ = tf.string_to_number(y_, out_type=tf.int32)
#Layer 1
W_conv1 = weight_variable([5, 5, 1, 32])
b_conv1 = bias_variable([32])
x_image = tf.reshape(x, [-1,28,28,1])
h_conv1 = tf.nn.relu(conv2d(x_image, W_conv1) + b_conv1)
h_pool1 = max_pool_2x2(h_conv1)
#Layer 2
W_conv2 = weight_variable([5, 5, 32, 64])
b_conv2 = bias_variable([64])
h_conv2 = tf.nn.relu(conv2d(h_pool1, W_conv2) + b_conv2)
h_pool2 = max_pool_2x2(h_conv2)
#Densely Connected Layer
W_fc1 = weight_variable([7 * 7 * 64, 1024])
b_fc1 = bias_variable([1024])
h_pool2_flat = tf.reshape(h_pool2, [-1, 7*7*64])
h_fc1 = tf.nn.relu(tf.matmul(h_pool2_flat, W_fc1) + b_fc1)
#Dropout - reduz overfitting
keep_prob = tf.placeholder(tf.float32)
h_fc1_drop = tf.nn.dropout(h_fc1, keep_prob)
#Readout layer
W_fc2 = weight_variable([1024, 36])
b_fc2 = bias_variable([36])
#y_conv=tf.nn.softmax(tf.matmul(h_fc1_drop, W_fc2) + b_fc2)
y_conv = tf.matmul(h_fc1_drop, W_fc2) + b_fc2
#Train and evaluate
#cross_entropy = tf.reduce_mean(-tf.reduce_sum(y_ * tf.log(y_conv), reduction_indices=[1]))
#cross_entropy = tf.reduce_mean(-tf.reduce_sum(onehot_y_ * tf.log(y_conv), reduction_indices=[1]))
cross_entropy = tf.reduce_mean(tf.nn.sparse_softmax_cross_entropy_with_logits(y_conv, y_))
train_step = tf.train.AdamOptimizer(1e-4).minimize(cross_entropy)
correct_prediction = tf.equal(tf.argmax(y_conv,1), tf.argmax(y_,1))
accuracy = tf.reduce_mean(tf.cast(correct_prediction, tf.float32))
sess.run(tf.initialize_all_variables())
coord = tf.train.Coordinator()
threads = tf.train.start_queue_runners(sess=sess, coord=coord)
for i in range(20000):
if i%100 == 0:
train_accuracy = accuracy.eval(feed_dict={keep_prob: 1.0})
print("step %d, training accuracy %g"%(i, train_accuracy))
train_step.run(feed_dict={keep_prob: 0.5})
x, y_ = inputs(train=True, batch_size=2000)
#y_ = tf.string_to_number(y_, out_type=tf.int32)
print("test accuracy %g"%accuracy.eval(feed_dict={keep_prob: 1.0}))
coord.join(threads)
sess.close()
Can anyone explain me whats going on? And how to fix it?
Thanks!
Marcelo V
I had similar problems in the past, and it was due to that I was storing and reading the data in incorrect data types. For example, I had casted the data first as type float when converting original png data to tfrecords. Then when I read the data out from tfrecords, I once again casted it as float (assuming the data coming out was uint8. Hence I had mismatch of 3136 (784*4) when expected 784. I'm guessing that may also be the case for you here.
In the line:
filename_queue = tf.train.string_input_producer([filename], num_epochs=num_epochs)
You specify the number of epochs the queue will run through the filenames. The documentation explains it well:
num_epochs: An integer (optional). If specified, string_input_producer produces each string from num_epochs times before generating an OutOfRange error. If not specified, string_input_producer can cycle through the strings in string_tensor an unlimited number of times.
In flags.DEFINE_integer('num_epochs', 2, 'Number of epochs to run trainer.'), you specify a default number of epochs 2. You should either increase that, or remove the num_epochs argument in string_input_producer.