Dynamically get the source strings of clojure multimethod implementation - clojure

I am interested in getting the source strings of all the implementations of clojure multimethods for documentation purposes.
Something similar to
(->> (methods my-multimethod)
(map (fn [[k f]] (clojure.repl/source-fn f))))
clojure.repl/source-fn does not work because it requires the source code to be on disk or something to that effect.
Any idea how I can get to the source dynamically similar to above?

defmethod does not produce a var, which could have been used by clojure.repl/source-fn.
The only way I can see is to get through all the source files and filter all the defmethod definitions.

Related

Creating clojure atoms with a function

I want to 1) create a list of symbols with the function below; then 2) create atoms with these symbols/names so that the atoms can be modified from other functions. This is the function to generate symbols/names:
(defn genVars [ dist ]
(let [ nms (map str (range dist)) neigs (map #(apply str "neig" %) nms) ]
(doseq [ v neigs ]
(intern *ns* (symbol v) [ ] ))
))
If dist=3, then 3 symbols, neig0, ... neig2 are created each bound with an empty vector. If it is possible to functionally create atoms with these symbols so that they are accessible from other functions. Any help is much appreciated, even if there are other ways to accomplish this.
your function seems to be correct, just wrap the value in the intern call with atom call. Also I would rather use dotimes.
user>
(defn gen-atoms [amount prefix]
(dotimes [i amount]
(intern *ns* (symbol (str prefix i)) (atom []))))
#'user/gen-atoms
user> (gen-atoms 2 "x")
nil
user> x0
#atom[[] 0x30f1a7b]
user> x1
#atom[[] 0x2149efef]
The desire to generate names suggests you would be better served by a single map instead:
(def neighbours (atom (make-neighbours)))
Where the definition of make-neigbours might look something like this:
(defn make-neighbours []
(into {} (for [i (range 10)]
[(str "neig" i) {:age i}])))
Where the other namespace would look values up using something like:
(get-in #data/neighbours ["neig0" :age])
Idiomatic Clojure tends to avoid creating many named global vars, preferring instead to collocating state into one or a few vars governed by Clojure's concurrency primitives (atom/ref/agent). I encourage you to think about whether your problem can be solved with a single atom in this way instead of requiring defining multiple vars.
Having said that, if you really really need multiple atoms, consider storing them all in a single map var instead of creating many global vars. Personally, I have never encountered a situation where creating many atoms was better than a single big atom (so I would be interested to hear about situations where this would be important).
If you really really need many vars, be aware that defining vars inside a function is actually bad style (https://github.com/bbatsov/clojure-style-guide#dont-def-vars-inside-fns). With good reason too! The beauty of using functions and data comes from the purity of the functions. def inside a function is particularly nasty as it is not only a side-effect, but is an potentially execution flow altering side-effect.
Of course yes there is a way to achieve it, as another answer points out.
Where it comes to defining things that goes beyond def and defn, there is quite a lot of precedence to using macros. For example defroutes from compojure, defschema from Schema, deftest from clojure.test. Generally anything that is a convenience form for creating vars. You could use a macro solution to create defs for your atoms:
(defmacro defneighbours [n]
`(do
~#(for [sym (for [i (range n)]
(symbol (str "neig" i)))]
`(def ~sym (atom {}))))
In my opinion this is actually less offensive than a functional version, only because it is creating global defs. It is a little more obvious about creating global defs by using the regular def syntax. But I only bring it up as a strawman, because this is still bad.
The reason functions and data work best is because they compose.
There are tangible considerations that make a single atom governing state very convenient. You can iterate over all neighbors conveniently, you can add new ones dynamically. Also you can do things like concatenating neighbors with other neighbors etc. Basically there are lots of function/data abstractions that you lock yourself out of if you create many global vars.
This is the reason that macros are generally considered useful for syntactic tricks, but best avoided in favor of functions and data. And it has a real impact on the flexibility of your code. For example going back to compojure; the macro syntax is actually very limiting, and for that reason I prefer not to use defroutes at all.
In summary:
Don't make lots of global defs if you can avoid it.
Prefer 1 atom over many atoms where possible.
Don't def inside a function.
Macros are best avoided in favor of functions and data.
Regardless of these guidelines, it is always good to explore what is possible, and I can't know your circumstances, so above all I hope you overcome your immediate problem and find Clojure a pleasant language to use.

How to safely read untrusted Clojure code (not just some serialized data)?

(def evil-code (str "(" (slurp "/mnt/src/git/clj/clojure/src/clj/clojure/core.clj") ")" ))
(def r (read-string evil-code ))
Works, but unsafe
(def r (clojure.edn/read-string evil-code))
RuntimeException Map literal must contain an even number of forms clojure.lang.Util.runtimeException (Util.java:219)
Does not work...
How to read Clojure code (presering all '#'s as themselves is desirable) into a tree safely? Imagine a Clojure antivirus that want to scan the code for threats and wants to work with data structure, not with plain text.
First of all you should never read clojure code directly from untrusted data sources. You should use EDN or another serialization format instead.
That being said since Clojure 1.5 there is a kind of safe way to read strings without evaling them. You should bind the read-eval var to false before using read-string. In Clojure 1.4 and earlier this potentially resulted in side effects caused by java constructors being invoked. Those problems have since been fixed.
Here is some example code:
(defn read-string-safely [s]
(binding [*read-eval* false]
(read-string s)))
(read-string-safely "#=(eval (def x 3))")
=> RuntimeException EvalReader not allowed when *read-eval* is false. clojure.lang.Util.runtimeException (Util.java:219)
(read-string-safely "(def x 3)")
=> (def x 3)
(read-string-safely "#java.io.FileWriter[\"precious-file.txt\"]")
=> RuntimeException Record construction syntax can only be used when *read-eval* == true clojure.lang.Util.runtimeException (Util.java:219)
Regarding reader macro's
The dispatch macro (#) and tagged literals are invoked at read time. There is no representation for them in Clojure data since by that time these constructs all have been processed. As far as I know there is no build in way to generate a syntax tree of Clojure code.
You will have to use an external parser to retain that information. Either you roll your own custom parser or you can use a parser generator like Instaparse and ANTLR. A complete Clojure grammar for either of those libraries might be hard to find but you could extend one of the EDN grammars to include the additional Clojure forms. A quick google revealed an ANTLR grammar for Clojure syntax, you could alter it to support the constructs that are missing if needed.
There is also Sjacket a library made for Clojure tools that need to retain information about the source code itself. It seems like a good fit for what you are trying to do but I don't have any experience with it personally. Judging from the tests it does have support for reader macro's in its parser.
According to the current documentation you should never use read nor read-string to read from untrusted data sources.
WARNING: You SHOULD NOT use clojure.core/read or
clojure.core/read-string to read data from untrusted sources. They
were designed only for reading Clojure code and data from trusted
sources (e.g. files that you know you wrote yourself, and no one
else has permission to modify them).
You should use read-edn or clojure.edn/read which were designed with that purpose in mind.
There was a long discussion in the mailing list regarding the use of read and read-eval and best practices regarding those.
I wanted to point out an old library (used in LightTable) that uses read-stringwith a techniques to propose a client/server communication
Fetch : A ClojureScript library for Client/Server interaction.
You can see in particular the safe-read method :
(defn safe-read [s]
(binding [*read-eval* false]
(read-string s)))
You can see the use of binding *read-eval* to false.
I think the rest of the code is worth watching at for the kind of abstractions it proposes.
In a PR, it is suggested that there is a security problem that can be fixed by using edn instead (...aaand back to your question) :
(require '[clojure.edn :as edn])
(defn safe-read [s]
(edn/read-string s))

Clojure macro as function / 'Partial' for Macros?

This is similar to the problem discussed in Treat Clojure macro as a function but when trying the approach in the top answer, I got an error. Hopefully too much information about my specific application is not necessary, because it is quite complicated, but here is a distilled version of what I tried to do:
(defmacro make-fn [m arg1]
`(fn [& args#]
(eval `(~'~m ~'~arg1 ~#args#))))
I used the macro in this context:
(let [columns (make-columns table-width)
table-name (keyword (str "table_" n))]
(apply (make-fn helpers/tbl table-name) columns))
"helpers/tbl" is a macro that expects a table name keyword and a variable number of lists containing column specifications (like [:varchar 100] or something). I am trying to create random database table specifications on the fly to facilitate some testing. Anyway, when trying to execute the above code, I get the following error:
CompilerException java.lang.RuntimeException: Unable to resolve symbol: table-name in this context, compiling:(NO_SOURCE_PATH:1)
I sort of grasp the problem: macro expansion is done at compile-time, and I am trying to include a runtime value in the macro expansion, hence the odd use of quoting and unquoting to get everything set up just right. I basically want a partial for macros, and I need to be able to reuse this mechanism for different macros in different namespaces, and have all of the variable resolution come out right. Is this even possible?
The problem is caused by the way Clojure resolves symbols within a syntax-quote (backtick) expression. To avoid unintentional variable capture, Clojure always interprets symbols within a syntax-quote expression as referring to Vars (not locals).
You can get around this by "rolling your own" form-building code, equivalent to that generated by syntax-quote. It's as ugly as sin, but it works... just don't say I didn't warn you:
(defmacro make-fn [m arg1]
(let [g (gensym)]
(list 'fn ['& g]
(list 'eval (list 'concat (list 'list m arg1) g)))))
Wow, this is like a flashback to my Common Lisp days...

Use cases for metadata in Clojure [duplicate]

How have you used metadata in your Clojure program?
I saw one example from Programming Clojure:
(defn shout [#^{:tag String} message] (.toUpperCase message))
;; Clojure casts message to String and then calls the method.
What are some uses? This form of programming is completely new to me.
Docstrings are stored as metadata under the :doc key. This is probably the number 1 most apparent use of metadata.
Return and parameter types can be optionally tagged with metadata to improve performance by avoiding the overhead of reflecting on the types at runtime. These are also known as "type hints." #^String is a type hint.
Storing things "under the hood" for use by the compiler, such as the arglist of a function, the line number where a var has been defined, or whether a var holds a reference to a macro. These are usually automatically added by the compiler and normally don't need to be manipulated directly by the user.
Creating simple testcases as part of a function definition:
(defn #^{:test (fn [] (assert true))} something [] nil)
(test #'something)
If you are reading Programming Clojure, then Chapter 2 provides a good intro to metadata. Figure 2.3 provides a good summary of common metadata.
For diversity some answer, which does not concentrate on interaction with the language itself:
You can also eg. track the source of some data. Unchecked input is marked as :tainted. A validator might check things and then set the status to :clean. Code doing security relevant things might then barf on :tainted and only accept :cleaned input.
Meta Data was extremely useful for me for purposes of typing. I'm talking not just about type hints, but about complete custom type system. Simplest example - overloading of print-method for structs (or any other var):
(defstruct my-struct :foo :bar :baz)
(defn make-my-struct [foo bar baz]
(with-meta (struct-map my-struct :foo foo :bar baz :baz baz)
{:type ::my-struct}))
(defmethod print-method
[my-struct writer]
(print-method ...))
In general, together with Clojure validation capabilities it may increase safety and, at the same time, flexibility of your code very very much (though it will take some more time to do actual coding).
For more ideas on typing see types-api.
metadata is used by the compiler extensively for things like storing the type of an object.
you use this when you give type hints
(defn foo [ #^String stringy] ....
I have used it for things like storing the amount of padding that was added to a number. Its intended for information that is 'orthogonal' to the data and should not be considered when deciding if you values are the same.

How do I get core clojure functions to work with my defrecords

I have a defrecord called a bag. It behaves like a list of item to count. This is sometimes called a frequency or a census. I want to be able to do the following
(def b (bag/create [:k 1 :k2 3])
(keys bag)
=> (:k :k1)
I tried the following:
(defrecord MapBag [state]
Bag
(put-n [self item n]
(let [new-n (+ n (count self item))]
(MapBag. (assoc state item new-n))))
;... some stuff
java.util.Map
(getKeys [self] (keys state)) ;TODO TEST
Object
(toString [self]
(str ("Bag: " (:state self)))))
When I try to require it in a repl I get:
java.lang.ClassFormatError: Duplicate interface name in class file compile__stub/techne/bag/MapBag (bag.clj:12)
What is going on? How do I get a keys function on my bag? Also am I going about this the correct way by assuming clojure's keys function eventually calls getKeys on the map that is its argument?
Defrecord automatically makes sure that any record it defines participates in the ipersistentmap interface. So you can call keys on it without doing anything.
So you can define a record, and instantiate and call keys like this:
user> (defrecord rec [k1 k2])
user.rec
user> (def a-rec (rec. 1 2))
#'user/a-rec
user> (keys a-rec)
(:k1 :k2)
Your error message indicates that one of your declarations is duplicating an interface that defrecord gives you for free. I think it might actually be both.
Is there some reason why you cant just use a plain vanilla map for your purposes? With clojure, you often want to use plain vanilla data structures when you can.
Edit: if for whatever reason you don't want the ipersistentmap included, look into deftype.
Rob's answer is of course correct; I'm posting this one in response to the OP's comment on it -- perhaps it might be helpful in implementing the required functionality with deftype.
I have once written an implementation of a "default map" for Clojure, which acts just like a regular map except it returns a fixed default value when asked about a key not present inside it. The code is in this Gist.
I'm not sure if it will suit your use case directly, although you can use it to do things like
user> (:earth (assoc (DefaultMap. 0 {}) :earth 8000000000))
8000000000
user> (:mars (assoc (DefaultMap. 0 {}) :earth 8000000000))
0
More importantly, it should give you an idea of what's involved in writing this sort of thing with deftype.
Then again, it's based on clojure.core/emit-defrecord, so you might look at that part of Clojure's sources instead... It's doing a lot of things which you won't have to (because it's a function for preparing macro expansions -- there's lots of syntax-quoting and the like inside it which you have to strip away from it to use the code directly), but it is certainly the highest quality source of information possible. Here's a direct link to that point in the source for the 1.2.0 release of Clojure.
Update:
One more thing I realised might be important. If you rely on a special map-like type for implementing this sort of thing, the client might merge it into a regular map and lose the "defaulting" functionality (and indeed any other special functionality) in the process. As long as the "map-likeness" illusion maintained by your type is complete enough for it to be used as a regular map, passed to Clojure's standard function etc., I think there might not be a way around that.
So, at some level the client will probably have to know that there's some "magic" involved; if they get correct answers to queries like (:mars {...}) (with no :mars in the {...}), they'll have to remember not to merge this into a regular map (merge-ing the other way around would work fine).