I am trying to use OpenNMT-py with python 2.7. OpenNMT-py requires torchtext, so I installed it but now when I am running my program, I am getting the following error message.
Traceback (most recent call last):
File "examples/StackPointerParser.py", line 23, in <module>
from neuronlp2.io import get_logger, conllx_stacked_data
File "./neuronlp2/__init__.py", line 7, in <module>
from . import models
File "./neuronlp2/models/__init__.py", line 4, in <module>
from .parsing import *
File "./neuronlp2/models/parsing.py", line 15, in <module>
from onmt.modules import LayerNorm, Transformer
File "/home/wasiahmad/software/anaconda2/lib/python2.7/site-packages/onmt/__init__.py", line 1, in <module>
import onmt.io
File "/home/wasiahmad/software/anaconda2/lib/python2.7/site-packages/onmt/io/__init__.py", line 1, in <module>
from onmt.io.IO import collect_feature_vocabs, make_features, \
File "/home/wasiahmad/software/anaconda2/lib/python2.7/site-packages/onmt/io/IO.py", line 8, in <module>
import torchtext.data
File "/home/wasiahmad/software/anaconda2/lib/python2.7/site-packages/torchtext/__init__.py", line 1, in <module>
from . import data
File "/home/wasiahmad/software/anaconda2/lib/python2.7/site-packages/torchtext/data/__init__.py", line 4, in <module>
from .field import RawField, Field, ReversibleField, SubwordField, NestedField, LabelField
File "/home/wasiahmad/software/anaconda2/lib/python2.7/site-packages/torchtext/data/field.py", line 61, in <module>
class Field(RawField):
File "/home/wasiahmad/software/anaconda2/lib/python2.7/site-packages/torchtext/data/field.py", line 115, in Field
torch.float32: float,
AttributeError: 'module' object has no attribute 'float32'
I tried to look for a solution to resolve this issue but couldn't find any. Any help would be appreciated.
This is more a guess, as you have not given information about your version. But it seems to me that your torchtext version is not compatible with your PyTorch version.
Probably when you installed torchtext you got the newer version already made for PyTorch 0.4.0. But your PyTorch version installed is still older than 0.4.0 (version 0.3.1 or so).
If that is the case you have two options. Downgrading torchtext to a version compatible to yours (probably the version before). Or upgrading PyTorch to version 0.4.0.
I hope this helps.
What's your pytorch version? As per the readme of the github repo of torchtext :
For PyTorch versions before 0.4.0, please use pip install torchtext==0.2.3.
I was facing this exact problem with pytorch 0.3.1 and torchtext 0.3.0. I uninstalled torchtext and then installed it with
pip install torchtext==0.2.3.
And it worked for me. Let me know if you face any other problems.
Related
I have installed TensorBoard. Before launching, I have also written the code in my neural network training file.
sess = tf.Session()
writer = tf.summary.FileWriter("demo")
writer.add_graph(sess.graph)
When i try to launch TensorBoard from terminal, using this command tensorboard --logdir=logs/
I get this error.
Traceback (most recent call last):
File "/usr/local/bin/tensorboard", line 7, in <module>
from tensorboard.main import run_main
File "/usr/local/lib/python3.4/dist-packages/tensorboard/main.py", line 40, in <module>
from tensorboard import default
File "/usr/local/lib/python3.4/dist-packages/tensorboard/default.py", line 37, in <module>
from tensorboard.plugins.audio import audio_plugin
File "/usr/local/lib/python3.4/dist-packages/tensorboard/plugins/audio/audio_plugin.py", line 30, in <module>
from tensorboard.plugins.audio import metadata
File "/usr/local/lib/python3.4/dist-packages/tensorboard/plugins/audio/metadata.py", line 22, in <module>
from tensorboard.plugins.audio import plugin_data_pb2
File "/usr/local/lib/python3.4/dist-packages/tensorboard/plugins/audio/plugin_data_pb2.py", line 22, in <module>
serialized_pb=_b('\n+tensorboard/plugins/audio/plugin_data.proto\x12\x0btensorboard\"}\n\x0f\x41udioPluginData\x12\x0f\n\x07version\x18\x01 \x01(\x05\x12\x37\n\x08\x65ncoding\x18\x02 \x01(\x0e\x32%.tensorboard.AudioPluginData.Encoding\" \n\x08\x45ncoding\x12\x0b\n\x07UNKNOWN\x10\x00\x12\x07\n\x03WAV\x10\x0b\x62\x06proto3')
TypeError: __new__() got an unexpected keyword argument 'serialized_options'
Is there a problem in my audio plugin or in the installation? I am using Ubuntu 14.04. I am a beginner, pardon if i have overlooked anything basic.
This happened to me on windows. I removed protobuf and libprotobuf and then reinstalled tensorboard, and it worked!
Not sure why, but while trying to find a solution like you it seemed like protobuf caused such issues in other libraries so I tried
I'm using spyder 2 anaconda 2.3.0 on windows as a python IDE for python 2.7. I've been using this for a long time to code in python but suddenly I don't know what happened and it said I did not have biopython package installed, when I installed biopython using
conda -c install anaconda biopython
command, biopython started running however it broke pandas and numpy.
now when I import pandas I get this:
>>> import pandas as pd
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "C:\Anaconda\lib\site-packages\pandas\__init__.py", line 13, in
<module>
"extensions first.".format(module))
ImportError: C extension: hashtable not built. If you want to import pandas
from the source directory, you may need to run 'python setup.py build_ext --
inplace' to build the C extensions first.
and then when I import numpy I get this:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "C:\Anaconda\lib\site-packages\numpy\__init__.py", line 142, in <module>
from . import add_newdocs
File "C:\Anaconda\lib\site-packages\numpy\add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "C:\Anaconda\lib\site-packages\numpy\lib\__init__.py", line 8, in <module>
from .type_check import *
File "C:\Anaconda\lib\site-packages\numpy\lib\type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "C:\Anaconda\lib\site-packages\numpy\core\__init__.py", line 26, in <module>
raise ImportError(msg)
ImportError:
Importing the multiarray numpy extension module failed. Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control). Otherwise reinstall numpy.
Original error was: DLL load failed: The specified module could not be found.
I uninstalled numpy and pandas and then installed them back using pip ... still the same. I entirely unistalled anaconda and installed it back still the same errors. I really do not know what's causing this. Any help will be truly appreciated. I've been trying to fix this for the past three days and its not working out. Thanks for your time.
I want to make a python package with numpy, pandas, scipy and sklearn, so I can take it to any linux without install python, but i came across this:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/data1/sigmoidguo/TOOLS/python27/lib/python2.7/site-packages/numpy/__init__.py", line 180, in <module>
from . import add_newdocs
File "/data1/sigmoidguo/TOOLS/python27/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "/data1/sigmoidguo/TOOLS/python27/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
from .type_check import *
File "/data1/sigmoidguo/TOOLS/python27/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "/data1/sigmoidguo/TOOLS/python27/lib/python2.7/site-packages/numpy/core/__init__.py", line 14, in <module>
from . import multiarray
ImportError: libblas.so.3: cannot open shared object file: No such file or directory
How can I fix it without root permission?
PS: I don't have root permission, so I can't install python site-packages to python...
You can install anaconda. It is a multi-platform python distribution that can be installed in your home folder (with user rights). It comes with pip and conda commands to install any package you need. It already comes with all the packages you mention (numpy, pandas, scipy and sklearn), so sounds like a good fit for your needs.
Would http://python-xy.github.io/ do the trick?
(if it was windows I would suggest the portable http://winpython.sourceforge.net/)
I recently came across a blog(http://stronginference.com/ScipySuperpack/) on how to install sklearn . I successfully installed it and it was stored on the path:
/usr/local/lib/python2.7/site-packages/sklearn
I then went to the properties of my eclipse; under the Interpreter-Python and added the path to the PYTHONPATH. I could import sklearn but when I ran this simple code to test everything:
from sklearn import datasets
iris = datasets.load_iris()
digits = datasets.load_digits()
print digits.data
It threw the following errors:
Traceback (most recent call last):
File "/Users/licheng/Documents/workspaceII/SkLearnTutorial/Src/my_first_scilearn.py", line 6, in <module>
from sklearn import datasets
File "/usr/local/lib/python2.7/site-packages/sklearn/datasets/__init__.py", line 7, in <module>
from .base import load_diabetes
File "/usr/local/lib/python2.7/site-packages/sklearn/datasets/base.py", line 24, in <module>
from ..utils import check_random_state
File "/usr/local/lib/python2.7/site-packages/sklearn/utils/__init__.py", line 10, in <module>
from .murmurhash import murmurhash3_32
File "numpy.pxd", line 155, in init sklearn.utils.murmurhash (/private/var/folders/fv/vhs3w0zn2q961_gyp8f2z_rw0000gn/T/pip-EVsI8B-build/sklearn/utils/murmurhash.c:5029)
ValueError: numpy.dtype has the wrong size, try recompiling
any help on what could be wrong? I have been on these for hours now.
Thanks
Try uninstalling NumPy, SciPy and scikit-learn.
Then reinstall those packages.
If you are using Windows, binaries for those packages have been provided by Christoph Gohlke, which can be quite convenient. Just download them and then use pip to install.
Unofficial Windows Binaries for Python Extension Packages
I installed ATpy-0.9.7 on my pc successfully and I also have the Python version of "2.7.5".
But when I import atpy I get the following error message:
>>> import atpy
ERROR: ImportError: No module named _sqlite3 [unknown]
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "atpy/__init__.py", line 1, in <module>
from .basetable import Table, TableSet, VectorException
File "atpy/basetable.py", line 15, in <module>
from . import registry
File "atpy/registry.py", line 186, in <module>
from . import sqltable
File "atpy/sqltable.py", line 10, in <module>
from . import sqlhelper as sql
File "atpy/sqlhelper.py", line 11, in <module>
import sqlite3
File "/export/aibn84_2/zahra/lib/Python-2.7.5/lib/python2.7/sqlite3/__init__.py", line 24, in <module>
from dbapi2 import *
File "/export/aibn84_2/zahra/lib/Python-2.7.5/lib/python2.7/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: No module named _sqlite3
I also installed db_sqlite3.egg-info. I don't know why this error message occurs!
I installed again th python2.7.5 with the following command :
./configure --prefix=$PYTHONPATH
but I also get this error after executing make:
Python build finished, but the necessary bits to build these modules were not found:
_bsddb _sqlite3 bsddb185
dbm dl gdbm
imageop sunaudiodev
To find the necessary bits, look in setup.py in detect_modules() for the module's name.
How could I run configure in order to install required C libraries?
If you are using a self built version of Python you need to ensure that both the base and the development sqllite3 packages are installed on your system before building Python.
If they are not and, as you said, you do not have superuser privileges, you can download and build sqlite locally, and get your Python build to use that version. This blog post describes how.
According to this question
How can I install sqlite3 to Python?
...you shouldn't have to install anything to get sqlite3 for python. Before I could import atpy I did have to install astropy (which was quite involved). After I did that, everything worked.