GCP Dataproc - configure YARN fair scheduler - google-cloud-platform

Question

I was trying to set up a dataproc cluster that would compute only one job (or specified max jobs) at a time and the rest would be in queue.
I have found this solution, How to configure monopolistic FIFO application queue in YARN? , but as I'm always creating a new cluster, I needed to automatize this. I have added this to cluster creation:
"softwareConfig": {
"properties": {
"yarn:yarn.resourcemanager.scheduler.class":"org.apache.hadoop.yarn.server.resourcemanager.scheduler.fair.FairScheduler",
"yarn:yarn.scheduler.fair.user-as-default-queue":"false",
"yarn:yarn.scheduler.fair.allocation.file":"$HADOOP_CONF_DIR/fair-scheduler.xml",
}
}
with another line in init action script:
sudo echo "<allocations><queueMaxAppsDefault>1</queueMaxAppsDefault></allocations>" > /etc/hadoop/conf/fair-scheduler.xml
and the cluster tells me this when I fetch its config:
'softwareConfig': {
'imageVersion': '1.2.27',
'properties': {
'capacity-scheduler:yarn.scheduler.capacity.root.default.ordering-policy': 'fair',
'core:fs.gs.block.size': '134217728',
'core:fs.gs.metadata.cache.enable': 'false',
'distcp:mapreduce.map.java.opts': '-Xmx4096m',
'distcp:mapreduce.map.memory.mb': '5120',
'distcp:mapreduce.reduce.java.opts': '-Xmx4096m',
'distcp:mapreduce.reduce.memory.mb': '5120',
'hdfs:dfs.datanode.address': '0.0.0.0:9866',
'hdfs:dfs.datanode.http.address': '0.0.0.0:9864',
'hdfs:dfs.datanode.https.address': '0.0.0.0:9865',
'hdfs:dfs.datanode.ipc.address': '0.0.0.0:9867',
'hdfs:dfs.namenode.http-address': '0.0.0.0:9870',
'hdfs:dfs.namenode.https-address': '0.0.0.0:9871',
'hdfs:dfs.namenode.secondary.http-address': '0.0.0.0:9868',
'hdfs:dfs.namenode.secondary.https-address': '0.0.0.0:9869',
'mapred-env:HADOOP_JOB_HISTORYSERVER_HEAPSIZE': '3840',
'mapred:mapreduce.job.maps': '189',
'mapred:mapreduce.job.reduce.slowstart.completedmaps': '0.95',
'mapred:mapreduce.job.reduces': '63',
'mapred:mapreduce.map.cpu.vcores': '1',
'mapred:mapreduce.map.java.opts': '-Xmx4096m',
'mapred:mapreduce.map.memory.mb': '5120',
'mapred:mapreduce.reduce.cpu.vcores': '1',
'mapred:mapreduce.reduce.java.opts': '-Xmx4096m',
'mapred:mapreduce.reduce.memory.mb': '5120',
'mapred:mapreduce.task.io.sort.mb': '256',
'mapred:yarn.app.mapreduce.am.command-opts': '-Xmx4096m',
'mapred:yarn.app.mapreduce.am.resource.cpu-vcores': '1',
'mapred:yarn.app.mapreduce.am.resource.mb': '5120',
'spark-env:SPARK_DAEMON_MEMORY': '3840m',
'spark:spark.driver.maxResultSize': '1920m',
'spark:spark.driver.memory': '3840m',
'spark:spark.executor.cores': '8',
'spark:spark.executor.memory': '37237m',
'spark:spark.yarn.am.memory': '640m',
'yarn:yarn.nodemanager.resource.memory-mb': '81920',
'yarn:yarn.resourcemanager.scheduler.class': 'org.apache.hadoop.yarn.server.resourcemanager.scheduler.fair.FairScheduler',
'yarn:yarn.scheduler.fair.allocation.file': '$HADOOP_CONF_DIR/fair-scheduler.xml',
'yarn:yarn.scheduler.fair.user-as-default-queue': 'false',
'yarn:yarn.scheduler.maximum-allocation-mb': '81920',
'yarn:yarn.scheduler.minimum-allocation-mb': '1024'
}
},
The file fair-scheduler.xml also contains the specified code (everything is in one line, but I don't think this could be the problem)
After all this, the cluster still acts like if the capacity scheduler was in charge. No idea why. Any recommendation would help.
Thanks.

Answer 1

as init actions script is running after the cluster is created, the yarn service is already running in the time when the script modify the yarn-site.xml.
So after modifying the xml config file and creating the other xml file, the yarn service needs to be restarted.
It can be done using this command:
sudo systemctl restart hadoop-yarn-resourcemanager.service
Also, since the $HADOOP_CONF_DIR was not set (I thought it should be), its needed to input the whole path to the file. But, after that, the initial YARN service won't start, because it can't find the file that is created later in init actions script. So, what I did is to add the last few lines to yarn-site.xml in the init actions script as well.
The code for init actions script is the following:
ROLE=$(/usr/share/google/get_metadata_value attributes/dataproc-role)
if [[ "${ROLE}" == 'Master' ]]; then
echo "<allocations>" > /etc/hadoop/conf/fair-scheduler.xml
echo " <queueMaxAppsDefault>1</queueMaxAppsDefault>" >> /etc/hadoop/conf/fair-scheduler.xml
echo "</allocations>" >> /etc/hadoop/conf/fair-scheduler.xml
sed -i '$ d' /etc/hadoop/conf/yarn-site.xml
echo " <property>" >> /etc/hadoop/conf/yarn-site.xml
echo " <name>yarn.scheduler.fair.allocation.file</name>" >> /etc/hadoop/conf/yarn-site.xml
echo " <value>/etc/hadoop/conf/fair-scheduler.xml</value>" >> /etc/hadoop/conf/yarn-site.xml
echo " </property>" >> /etc/hadoop/conf/yarn-site.xml
echo "</configuration>" >> /etc/hadoop/conf/yarn-site.xml
systemctl restart hadoop-yarn-resourcemanager.service
fi