I need to set timeout of db calls, and I looked into SQLAlchemy documentation http://flask-sqlalchemy.pocoo.org/2.1/config/
There are many configuration parameters, but never illustrate an example of how to use them. Could anyone show me how to use SQLALCHEMY_POOL_TIMEOUT in order to set timeout of db calls? I have them in my .py files, but I don't know whether I use the parameter correctly.
app = Flask(__name__)
app.config["LOGGER_NAME"] = ' '.join([app.logger_name,
socket.gethostname(), instance_id])
app.config["SQLALCHEMY_DATABASE_URI"] = config.sqlalchemy_database_uri
app.config["SQLALCHEMY_TRACK_MODIFICATIONS"] = False
app.config["SQLALCHEMY_POOL_TIMEOUT"] = 30
The document only states that "Specifies the connection timeout for the pool. Defaults to 10." and I don't even know the unit of this 10, is it seconds or milliseconds?
The unit is seconds. As can be seen in the later documentation. Configuration — Flask-SQLAlchemy Documentation (2.3)
Related
In my application, the state of a common object is changed by making requests, and the response depends on the state.
class SomeObj():
def __init__(self, param):
self.param = param
def query(self):
self.param += 1
return self.param
global_obj = SomeObj(0)
#app.route('/')
def home():
flash(global_obj.query())
render_template('index.html')
If I run this on my development server, I expect to get 1, 2, 3 and so on. If requests are made from 100 different clients simultaneously, can something go wrong? The expected result would be that the 100 different clients each see a unique number from 1 to 100. Or will something like this happen:
Client 1 queries. self.param is incremented by 1.
Before the return statement can be executed, the thread switches over to client 2. self.param is incremented again.
The thread switches back to client 1, and the client is returned the number 2, say.
Now the thread moves to client 2 and returns him/her the number 3.
Since there were only two clients, the expected results were 1 and 2, not 2 and 3. A number was skipped.
Will this actually happen as I scale up my application? What alternatives to a global variable should I look at?
You can't use global variables to hold this sort of data. Not only is it not thread safe, it's not process safe, and WSGI servers in production spawn multiple processes. Not only would your counts be wrong if you were using threads to handle requests, they would also vary depending on which process handled the request.
Use a data source outside of Flask to hold global data. A database, memcached, or redis are all appropriate separate storage areas, depending on your needs. If you need to load and access Python data, consider multiprocessing.Manager. You could also use the session for simple data that is per-user.
The development server may run in single thread and process. You won't see the behavior you describe since each request will be handled synchronously. Enable threads or processes and you will see it. app.run(threaded=True) or app.run(processes=10). (In 1.0 the server is threaded by default.)
Some WSGI servers may support gevent or another async worker. Global variables are still not thread safe because there's still no protection against most race conditions. You can still have a scenario where one worker gets a value, yields, another modifies it, yields, then the first worker also modifies it.
If you need to store some global data during a request, you may use Flask's g object. Another common case is some top-level object that manages database connections. The distinction for this type of "global" is that it's unique to each request, not used between requests, and there's something managing the set up and teardown of the resource.
This is not really an answer to thread safety of globals.
But I think it is important to mention sessions here.
You are looking for a way to store client-specific data. Every connection should have access to its own pool of data, in a threadsafe way.
This is possible with server-side sessions, and they are available in a very neat flask plugin: https://pythonhosted.org/Flask-Session/
If you set up sessions, a session variable is available in all your routes and it behaves like a dictionary. The data stored in this dictionary is individual for each connecting client.
Here is a short demo:
from flask import Flask, session
from flask_session import Session
app = Flask(__name__)
# Check Configuration section for more details
SESSION_TYPE = 'filesystem'
app.config.from_object(__name__)
Session(app)
#app.route('/')
def reset():
session["counter"]=0
return "counter was reset"
#app.route('/inc')
def routeA():
if not "counter" in session:
session["counter"]=0
session["counter"]+=1
return "counter is {}".format(session["counter"])
#app.route('/dec')
def routeB():
if not "counter" in session:
session["counter"] = 0
session["counter"] -= 1
return "counter is {}".format(session["counter"])
if __name__ == '__main__':
app.run()
After pip install Flask-Session, you should be able to run this. Try accessing it from different browsers, you'll see that the counter is not shared between them.
Another example of a data source external to requests is a cache, such as what's provided by Flask-Caching or another extension.
Create a file common.py and place in it the following:
from flask_caching import Cache
# Instantiate the cache
cache = Cache()
In the file where your flask app is created, register your cache with the following code:
# Import cache
from common import cache
# ...
app = Flask(__name__)
cache.init_app(app=app, config={"CACHE_TYPE": "filesystem",'CACHE_DIR': Path('/tmp')})
Now use throughout your application by importing the cache and executing as follows:
# Import cache
from common import cache
# store a value
cache.set("my_value", 1_000_000)
# Get a value
my_value = cache.get("my_value")
While totally accepting the previous upvoted answers, and discouraging use of global variables for production and scalable Flask storage, for the purpose of prototyping or really simple servers, running under the flask 'development server'...
...
The Python built-in data types, and I personally used and tested the global dict, as per Python documentation are thread safe. Not process safe.
The insertions, lookups, and reads from such a (server global) dict will be OK from each (possibly concurrent) Flask session running under the development server.
When such a global dict is keyed with a unique Flask session key, it can be rather useful for server-side storage of session specific data otherwise not fitting into the cookie (max size 4 kB).
Of course, such a server global dict should be carefully guarded for growing too large, being in-memory. Some sort of expiring the 'old' key/value pairs can be coded during request processing.
Again, it is not recommended for production or scalable deployments, but it is possibly OK for local task-oriented servers where a separate database is too much for the given task.
...
So far, I've been declaring my db connection outside of my web server app creation:
# src/main.py
db_session = ... # connection
app = FastAPI()
handler = Mangum(app)
# other files would import db_session from src.main
# and query the db through it
For better unit testing, I decided to move the db declaration as part of the app state:
def create_app(settings: Settings):
app = FastApi()
app.state.config = settings
app.state.db_session = ... # here is the db declaration, using `settings` to get db credentials
...
return app
app = create_app(settings)
handler = Mangum(app)
does anyone know if, by wrapping the app around Mangum, db session won't be shared anymore across multiple lambda invocations ? I don't know to which extent app here is within the handler real code.
There is a pretty good answer citing the AWS documentation here: Scope of Python globals in AWS Lambda
In your case, app is a global variable and anything connected to it should stay global. Passing it onto the function call (or class constructor) of Mangum won't change that.
I'm not familiar with Mangum, but unless it does some sort of trickery, it should be a regular global variable.
Is there any method in Python + Selenium for retrieving the webdriver's current page load timeout?
I know to use set_page_load_timeout() and examining the Chromedriver logs shows that this modified its internal state so I am wondering if there's way to query for it?
Alternatively, I will simply save the value on my side of the code. The retrieval would be helpful to verify that the timeout was successfully set and later on that it's still the same.
When you initialize the WebDriver it is configured with a default page_load_timeout of 300000 seconds which you can extract from the capabilities dictionary as follows:
Code Block:
from selenium import webdriver
driver = webdriver.Firefox(executable_path=r'C:\Utility\BrowserDrivers\geckodriver.exe')
dict = driver.capabilities['timeouts']
print(dict["pageLoad"])
driver.quit()
Console Output:
300000
I setup a simple script to insert a new record into a Cassandra database. It works fine on my local machine, but I am getting timeout errors from the client when I moved the database to a remote machine. How do I properly set the timeout for this driver? I have tried many things. I hacked the timeout in my IDE and got it to work without timing out, so I know for sure its just a timeout problem.
How I setup my Cluster:
profile = ExecutionProfile(request_timeout=100000)
self.cluster = Cluster([os.getenv('CASSANDRA_NODES', None)], auth_provider=auth_provider,
execution_profiles={EXEC_PROFILE_DEFAULT: profile})
connection.setup(hosts=[os.getenv('CASSANDRA_SEED', None)],
default_keyspace=os.getenv('KEYSPACE', None),
consistency=int(os.getenv('CASSANDRA_SESSION_CONSISTENCY', 1)), auth_provider=auth_provider,
connect_timeout=200)
session = self.cluster.connect()
The query I am trying to perform:
model = Model.create(buffer=_buffer, lock=False, version=self.version)
13..': 'Client request timeout. See Session.execute_async'}, last_host=54.213..
The record I'm inserting is 11mb, so I can understand there is a delay, just increasing the timeout should do it, but I can't seem to figure it out.
The default request timeout is an attribute of the Session object (version 2.0.0 of the driver and later).
session = cluster.connect(keyspace)
session.default_timeout = 60
This is the simplest answer (no need to mess about with an execution profile), and I have confirmed that it works.
https://datastax.github.io/python-driver/api/cassandra/cluster.html#cassandra.cluster.Session
You can set request_timeout in the Cluster constructor:
self.cluster = Cluster([os.getenv('CASSANDRA_NODES', None)],
auth_provider=auth_provider,
execution_profiles={EXEC_PROFILE_DEFAULT: profile},
request_timeout=10)
Reference: https://datastax.github.io/python-driver/api/cassandra/cluster.html
Based on the documentation, request_timeout is an attribute of ExecutionProfile class, and you can give an execution profile to the cluster constructor (this is an example).
So, you can do:
from cassandra.cluster import Cluster
from cassandra.cluster import ExecutionProfile
execution_profil = ExecutionProfile(request_timeout=600)
profiles = {'node1': execution_profil}
cluster = Cluster([os.getenv('CASSANDRA_NODES', None)], execution_profiles=profiles)
session = cluster.connect()
session.execute('SELECT * FROM test', execution_profile='node1')
Important: when you use execute or èxecute_async, you have to specify the execution_profile name.
Background:
I'm working a project which uses Django with a Postgres database. We're also using mod_wsgi in case that matters, since some of my web searches have made mention of it. On web form submit, the Django view kicks off a job that will take a substantial amount of time (more than the user would want to wait), so we kick off the job via a system call in the background. The job that is now running needs to be able to read and write to the database. Because this job takes so long, we use multiprocessing to run parts of it in parallel.
Problem:
The top level script has a database connection, and when it spawns off child processes, it seems that the parent's connection is available to the children. Then there's an exception about how SET TRANSACTION ISOLATION LEVEL must be called before a query. Research has indicated that this is due to trying to use the same database connection in multiple processes. One thread I found suggested calling connection.close() at the start of the child processes so that Django will automatically create a new connection when it needs one, and therefore each child process will have a unique connection - i.e. not shared. This didn't work for me, as calling connection.close() in the child process caused the parent process to complain that the connection was lost.
Other Findings:
Some stuff I read seemed to indicate you can't really do this, and that multiprocessing, mod_wsgi, and Django don't play well together. That just seems hard to believe I guess.
Some suggested using celery, which might be a long term solution, but I am unable to get celery installed at this time, pending some approval processes, so not an option right now.
Found several references on SO and elsewhere about persistent database connections, which I believe to be a different problem.
Also found references to psycopg2.pool and pgpool and something about bouncer. Admittedly, I didn't understand most of what I was reading on those, but it certainly didn't jump out at me as being what I was looking for.
Current "Work-Around":
For now, I've reverted to just running things serially, and it works, but is slower than I'd like.
Any suggestions as to how I can use multiprocessing to run in parallel? Seems like if I could have the parent and two children all have independent connections to the database, things would be ok, but I can't seem to get that behavior.
Thanks, and sorry for the length!
Multiprocessing copies connection objects between processes because it forks processes, and therefore copies all the file descriptors of the parent process. That being said, a connection to the SQL server is just a file, you can see it in linux under /proc//fd/.... any open file will be shared between forked processes. You can find more about forking here.
My solution was just simply close db connection just before launching processes, each process recreate connection itself when it will need one (tested in django 1.4):
from django import db
db.connections.close_all()
def db_worker():
some_paralell_code()
Process(target = db_worker,args = ())
Pgbouncer/pgpool is not connected with threads in a meaning of multiprocessing. It's rather solution for not closing connection on each request = speeding up connecting to postgres while under high load.
Update:
To completely remove problems with database connection simply move all logic connected with database to db_worker - I wanted to pass QueryDict as an argument... Better idea is simply pass list of ids... See QueryDict and values_list('id', flat=True), and do not forget to turn it to list! list(QueryDict) before passing to db_worker. Thanks to that we do not copy models database connection.
def db_worker(models_ids):
obj = PartModelWorkerClass(model_ids) # here You do Model.objects.filter(id__in = model_ids)
obj.run()
model_ids = Model.objects.all().values_list('id', flat=True)
model_ids = list(model_ids) # cast to list
process_count = 5
delta = (len(model_ids) / process_count) + 1
# do all the db stuff here ...
# here you can close db connection
from django import db
db.connections.close_all()
for it in range(0:process_count):
Process(target = db_worker,args = (model_ids[it*delta:(it+1)*delta]))
When using multiple databases, you should close all connections.
from django import db
for connection_name in db.connections.databases:
db.connections[connection_name].close()
EDIT
Please use the same as #lechup mentionned to close all connections(not sure since which django version this method was added):
from django import db
db.connections.close_all()
For Python 3 and Django 1.9 this is what worked for me:
import multiprocessing
import django
django.setup() # Must call setup
def db_worker():
for name, info in django.db.connections.databases.items(): # Close the DB connections
django.db.connection.close()
# Execute parallel code here
if __name__ == '__main__':
multiprocessing.Process(target=db_worker)
Note that without the django.setup() I could not get this to work. I am guessing something needs to be initialized again for multiprocessing.
I had "closed connection" issues when running Django test cases sequentially. In addition to the tests, there is also another process intentionally modifying the database during test execution. This process is started in each test case setUp().
A simple fix was to inherit my test classes from TransactionTestCase instead of TestCase. This makes sure that the database was actually written, and the other process has an up-to-date view on the data.
Another way around your issue is to initialise a new connection to the database inside the forked process using:
from django.db import connection
connection.connect()
(not a great solution, but a possible workaround)
if you can't use celery, maybe you could implement your own queueing system, basically adding tasks to some task table and having a regular cron that picks them off and processes? (via a management command)
Hey I ran into this issue and was able to resolve it by performing the following (we are implementing a limited task system)
task.py
from django.db import connection
def as_task(fn):
""" this is a decorator that handles task duties, like setting up loggers, reporting on status...etc """
connection.close() # this is where i kill the database connection VERY IMPORTANT
# This will force django to open a new unique connection, since on linux at least
# Connections do not fare well when forked
#...etc
ScheduledJob.py
from django.db import connection
def run_task(request, job_id):
""" Just a simple view that when hit with a specific job id kicks of said job """
# your logic goes here
# ...
processor = multiprocessing.Queue()
multiprocessing.Process(
target=call_command, # all of our tasks are setup as management commands in django
args=[
job_info.management_command,
],
kwargs= {
'web_processor': processor,
}.items() + vars(options).items()).start()
result = processor.get(timeout=10) # wait to get a response on a successful init
# Result is a tuple of [TRUE|FALSE,<ErrorMessage>]
if not result[0]:
raise Exception(result[1])
else:
# THE VERY VERY IMPORTANT PART HERE, notice that up to this point we haven't touched the db again, but now we absolutely have to call connection.close()
connection.close()
# we do some database accessing here to get the most recently updated job id in the database
Honestly, to prevent race conditions (with multiple simultaneous users) it would be best to call database.close() as quickly as possible after you fork the process. There may still be a chance that another user somewhere down the line totally makes a request to the db before you have a chance to flush the database though.
In all honesty it would likely be safer and smarter to have your fork not call the command directly, but instead call a script on the operating system so that the spawned task runs in its own django shell!
If all you need is I/O parallelism and not processing parallelism, you can avoid this problem by switch your processes to threads. Replace
from multiprocessing import Process
with
from threading import Thread
The Thread object has the same interface as Procsess
If you're also using connection pooling, the following worked for us, forcibly closing the connections after being forked. Before did not seem to help.
from django.db import connections
from django.db.utils import DEFAULT_DB_ALIAS
connections[DEFAULT_DB_ALIAS].dispose()
One possibility is to use multiprocessing spawn child process creation method, which will not copy django's DB connection details to the child processes. The child processes need to bootstrap from scratch, but are free to create/close their own django DB connections.
In calling code:
import multiprocessing
from myworker import work_one_item # <-- Your worker method
...
# Uses connection A
list_of_items = djago_db_call_one()
# 'spawn' starts new python processes
with multiprocessing.get_context('spawn').Pool() as pool:
# work_one_item will create own DB connection
parallel_results = pool.map(work_one_item, list_of_items)
# Continues to use connection A
another_db_call(parallel_results)
In myworker.py:
import django. # <-\
django.setup() # <-- needed if you'll make DB calls in worker
def work_one_item(item):
try:
# This will create a new DB connection
return len(MyDjangoModel.objects.all())
except Exception as ex:
return ex
Note that if you're running the calling code inside a TestCase, mocks will not be propagated to the child processes (will need to re-apply them).
You could give more resources to Postgre, in Debian/Ubuntu you can edit :
nano /etc/postgresql/9.4/main/postgresql.conf
by replacing 9.4 by your postgre version .
Here are some useful lines that should be updated with example values to do so, names speak for themselves :
max_connections=100
shared_buffers = 3000MB
temp_buffers = 800MB
effective_io_concurrency = 300
max_worker_processes = 80
Be careful not to boost too much these parameters as it might lead to errors with Postgre trying to take more ressources than available. Examples above are running fine on a Debian 8GB Ram machine equiped with 4 cores.
Overwrite the thread class and close all DB connections at the end of the thread. Bellow code works for me:
class MyThread(Thread):
def run(self):
super().run()
connections.close_all()
def myasync(function):
def decorator(*args, **kwargs):
t = MyThread(target=function, args=args, kwargs=kwargs)
t.daemon = True
t.start()
return decorator
When you need to call a function asynchronized:
#myasync
def async_function():
...