I've installed Theano as such:
(python2) bash-3.2$ sudo pip install --upgrade --no-deps git+git://github.com/Theano/Theano.git
I'm using conda with Python 2.7. The python2 in parentheses is my conda environment. I'm trying to run the code from iGAN: https://github.com/junyanz/iGAN. I'm on OS X 10.11.6.
The error I get is ImportError: cannot import name inplace_increment. I've tried manually removing the Theano cache (as described in https://github.com/Theano/Theano/issues/5564) and the same error still arises. (I can't use theano-cache purge because it requires installing a version of scipy that clashes with the version required by OpenCV.) I've also tried uninstalling and reinstalling Theano via pip and still get the same error. Any suggestions?
Here's the context:
(python2) bash-3.2$ python iGAN_main.py
//anaconda/envs/python2/lib/python2.7/site-packages/numpy/lib/utils.py:254: FutureWarning: Numpy has detected that you (may be) writing to an array returned
by numpy.diagonal or by selecting multiple fields in a record
array. This code will likely break in the next numpy release --
see numpy.diagonal or arrays.indexing reference docs for details.
The quick fix is to make an explicit copy (e.g., do
arr.diagonal().copy() or arr[['f0','f1']].copy()).
ai = a.__array_interface__
Traceback (most recent call last):
File "iGAN_main.py", line 9, in <module>
import constrained_opt
File "/Users/.../Desktop/Code/iGAN/constrained_opt.py", line 3, in <module>
from lib.rng import np_rng
File "/Users/.../Desktop/Code/iGAN/lib/rng.py", line 2, in <module>
from theano.sandbox.rng_mrg import MRG_RandomStreams as RandomStreams
File "//anaconda/envs/python2/lib/python2.7/site-packages/theano/__init__.py", line 102, in <module>
from theano.scan_module import (scan, map, reduce, foldl, foldr, clone,
File "//anaconda/envs/python2/lib/python2.7/site-packages/theano/scan_module/__init__.py", line 41, in <module>
from theano.scan_module import scan_opt
File "//anaconda/envs/python2/lib/python2.7/site-packages/theano/scan_module/scan_opt.py", line 60, in <module>
from theano import tensor, scalar
File "//anaconda/envs/python2/lib/python2.7/site-packages/theano/tensor/__init__.py", line 9, in <module>
from theano.tensor.subtensor import *
File "//anaconda/envs/python2/lib/python2.7/site-packages/theano/tensor/subtensor.py", line 27, in <module>
from cutils_ext.cutils_ext import inplace_increment
ImportError: cannot import name inplace_increment
I had the same problem.
Deleting the cache manually worked.
rm -rf ~/.theano
If that doesn't help try installing from source.
python setup.py install
Related
I am using Anaconda and trying to install tensorflow with pip, but I receive the following error and I am not sure what to do next?
Traceback (most recent call last):
File "/home/xieyangyang/anaconda3/envs/tensorflow1/bin/pip", line 7, in <module>
from pip._internal import main
File "/home/xieyangyang/anaconda3/envs/tensorflow1/lib/python2.7/site-packages/pip/_internal/__init__.py", line 20, in <module>
from pip._vendor.urllib3.exceptions import DependencyWarning
File "/home/xieyangyang/anaconda3/envs/tensorflow1/lib/python2.7/site-packages/pip/_vendor/urllib3/__init__.py", line 8, in <module>
from .connectionpool import (
File "/home/xieyangyang/anaconda3/envs/tensorflow1/lib/python2.7/site-packages/pip/_vendor/urllib3/connectionpool.py", line 44, in <module>
from .util.queue import LifoQueue
ImportError: No module named queue
Maybe just reinstall pip without pip?
curl https://bootstrap.pypa.io/get-pip.py -o get-pip.py
python get-pip.py
See https://pip.pypa.io/en/stable/installing/ for more info.
Hi I am trying to download PyUserInput, I downloaded it using pip and there were no errors. When I try to import it into a file in give me an error which I do not understand. I have a basic understanding of python and pip.Any help will be much appreciated.I have pasted the error I get below.
Traceback (most recent call last):
File "<pyshell#0>", line 1, in <module>
from pymouse import PyMouse
File "/usr/local/lib/python2.7/dist-packages/pymouse/__init__.py", line 41, in <module>
from .x11 import PyMouse, PyMouseEvent
File "/usr/local/lib/python2.7/dist-packages/pymouse/x11.py", line 16, in <module>
from Xlib.display import Display
File "/usr/local/lib/python2.7/dist-packages/Xlib/display.py", line 26, in <module>
from six import create_unbound_method
ImportError: cannot import name create_unbound_method
Thanks
I had the same problem on old raspberry pi image and upgrading six solved the issue for me:
sudo pip install six --upgrade
I installed locustio
pip install locustio
Once installed, I tried running
locust --help
But I get the following error:
Traceback (most recent call last):
File "/home/vagrant/.virtualenvs/chalktalk-legacy/bin/locust", line 7, in <module>
from locust.main import main
File "/home/vagrant/.virtualenvs/chalktalk-legacy/local/lib/python2.7/site-packages/locust/__init__.py", line 1, in <module>
from core import HttpLocust, Locust, TaskSet, task
File "/home/vagrant/.virtualenvs/chalktalk-legacy/local/lib/python2.7/site-packages/locust/core.py", line 1, in <module>
import gevent
File "/home/vagrant/.virtualenvs/chalktalk-legacy/local/lib/python2.7/site-packages/gevent/__init__.py", line 49, in <module>
from gevent.hub import get_hub, iwait, wait, PYPY
File "/home/vagrant/.virtualenvs/chalktalk-legacy/local/lib/python2.7/site-packages/gevent/hub.py", line 11, in <module>
from greenlet import greenlet, getcurrent, GreenletExit
ImportError: /home/vagrant/.virtualenvs/chalktalk-legacy/local/lib/python2.7/site-packages/greenlet.so: undefined symbol: _PyTrash_thread_deposit_object
Is the solution to rebuild gevent? If so, how does one go about rebuilding greenlet in debian virtualenv with python 2.7.3? If not, how do I solve this issue without upgrading python?
I am running a brewed Python 2.7.11 on OS X El Capitan 10.11.3. I fail to import Shapely / GEOS:
Failed `CDLL(/usr/local/lib/libgeos_c.dylib)`
Failed `CDLL(/Library/Frameworks/GEOS.framework/Versions/Current/GEOS)`
Failed `CDLL(/opt/local/lib/libgeos_c.dylib)`
Traceback (most recent call last):
File "example.py", line 2, in <module>
from shapely.geometry import Point
File "/Library/Frameworks/GEOS.framework/Versions/3/Python/2.7/site-packages/shapely/geometry/__init__.py", line 4, in <module>
from .base import CAP_STYLE, JOIN_STYLE
File "/Library/Frameworks/GEOS.framework/Versions/3/Python/2.7/site-packages/shapely/geometry/base.py", line 9, in <module>
from shapely.coords import CoordinateSequence
File "/Library/Frameworks/GEOS.framework/Versions/3/Python/2.7/site-packages/shapely/coords.py", line 8, in <module>
from shapely.geos import lgeos
File "/Library/Frameworks/GEOS.framework/Versions/3/Python/2.7/site-packages/shapely/geos.py", line 92, in <module>
mode=(DEFAULT_MODE | 16))
File "/Library/Frameworks/GEOS.framework/Versions/3/Python/2.7/site-packages/shapely/geos.py", line 61, in load_dll
libname, fallbacks or []))
OSError: Could not find lib geos_c or load any of its variants ['/Library/Frameworks/GEOS.framework/Versions/Current/GEOS', '/opt/local/lib/libgeos_c.dylib'].
This error is strikingly similar to those reported here:
Python can't import shapely and
OSError geos_c could not be found when Installing Shapely. After implementing all suggestions that "did the trick" for others, I continue to get this error.
I installed geos with brew install geos today. It installed in /usr/local/Cellar/geos/3.5.0.
If I run find / -name "libgeos_c.dylib", I find three versions:
/Library/Frameworks/GEOS.framework/Versions/3/unix/lib/libgeos_c.dylib
/usr/local/Cellar/geos/3.5.0/lib/libgeos_c.dylib
/usr/local/lib/libgeos_c.dylib
Note that the last line is exactly the same path as in the first line of the error. So Python fails to import an existing file? I know it is an alias (to the file in Cellar), but would be surprised if that's the reason.
Also, $DYLD_LIBRARY_PATH and $GEOS_LIBRARY_PATH are empty at startup, but setting them to any of the following does not resolve the problem:
export DYLD_LIBRARY_PATH=/usr/local/lib
export GEOS_LIBRARY_PATH=/usr/local/Cellar/geos/3.5.0
export GEOS_LIBRARY_PATH=/usr/local/Cellar/geos/3.5.0/lib
Any insight will be tremendously welcome! This has taken me more than half of the day already...
Using Anaconda 2.5.0 (python 2.7) on a relatively clean Ubuntu 15.04 desktop system, I have the following unusual behavior:
If I package my application with cx_Freeze 4.3.4 and add the bin directory to the PYTHONPATH environment variable:
export PYTHONPATH=~/frozen-app/bin
Then, when I mistype a bash command:
sl
Instead of the expected:
The program 'sl' is currently not installed. You can install it by typing:
sudo apt-get install sl
I get a python stack trace:
Traceback (most recent call last):
File "/usr/lib/command-not-found", line 23, in <module>
import gettext
File "/usr/lib/python3.4/gettext.py", line 49, in <module>
import locale, copy, io, os, re, struct, sys
File "/usr/lib/python3.4/locale.py", line 18, in <module>
import collections
File "/usr/lib/python3.4/collections/__init__.py", line 11, in <module>
from operator import itemgetter as _itemgetter, eq as _eq
ImportError: dynamic module does not define init function (PyInit_operator)
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 62, in apport_excepthook
import re, traceback
File "/usr/lib/python3.4/traceback.py", line 3, in <module>
import linecache
File "/usr/lib/python3.4/linecache.py", line 10, in <module>
import tokenize
File "/usr/lib/python3.4/tokenize.py", line 29, in <module>
import collections
File "/usr/lib/python3.4/collections/__init__.py", line 11, in <module>
from operator import itemgetter as _itemgetter, eq as _eq
ImportError: dynamic module does not define init function (PyInit_operator)
Original exception was:
Traceback (most recent call last):
File "/usr/lib/command-not-found", line 23, in <module>
import gettext
File "/usr/lib/python3.4/gettext.py", line 49, in <module>
import locale, copy, io, os, re, struct, sys
File "/usr/lib/python3.4/locale.py", line 18, in <module>
import collections
File "/usr/lib/python3.4/collections/__init__.py", line 11, in <module>
from operator import itemgetter as _itemgetter, eq as _eq
ImportError: dynamic module does not define init function (PyInit_operator)
It seems that the "command-not-found" command gets confused by my PYTHONPATH environment, but I can't figure out exactly why. I don't think any of the mentioned modules are defined in my application (I don't define an "re" module in my app for example).
If I run "strace sl", then I just get "can't stat sl". Is there another way to figure out exactly which file in my application is causing this?
Using the suggestion by Charles Duffy above, and looking more closely at the python stack trace, I was able to reproduce the error with:
python3.4 -m operator
Just this replicates the stack trace. Since my PYTHONPATH points to a bin directory from from an Anaconda2.5 (python 2.7), it seems that the python3.4 tries to load operator.so from the the anaconda distribution which has been frozen in my bin directory. This particular import fails. Deleting operator.so from my bin fixes this issue. It seems that using the system python3.4 (which is used by command-not-found) and the Anaconda 2.7 combined with explicitly setting PYTHONPATH can cause trouble.