I've been trying to get PCL (1.8) working properly on my system (Ubuntu 16.04) but I am struggling to get even the basic tutorial to work. I could not install the prebuilt binaries supplied by pointclouds.org so instead followed the answer from this post and used the native repository from Ubuntu to install v1.8.
I then began to run into the same issues raised in this question. I fixed some of them myself using symlinks to correct paths broken by renaming and also installed the missing packages that I could. However I am unable to successfully create a usable makefile.
I am trying to follow this tutorial from pointclouds.org just so I can make sure everything is working.
Output from running cmake:
-- The C compiler identification is GNU 4.9.3
-- The CXX compiler identification is GNU 4.9.3
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Checking for module 'eigen3'
-- Found eigen3, version 3.2.92
-- Found eigen: /usr/include/eigen3
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- system
-- filesystem
-- thread
-- date_time
-- iostreams
-- serialization
-- chrono
-- atomic
-- regex
-- Checking for module 'libopenni'
-- Found libopenni, version 1.5.4.0
-- Found openni: /usr/lib/libOpenNI.so
-- Checking for module 'libopenni2'
-- Found libopenni2, version 2.2.0.3
-- Found OpenNI2: /usr/lib/libOpenNI2.so
** WARNING ** io features related to pcap will be disabled
** WARNING ** io features related to png will be disabled
-- The imported target "vtkRenderingPythonTkWidgets" references the file
"/usr/lib/x86_64-linux-gnu/libvtkRenderingPythonTkWidgets.so"
but this file does not exist. Possible reasons include:
* The file was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and contained
"/usr/lib/cmake/vtk-6.2/VTKTargets.cmake"
but not all the files it references.
-- Found libusb-1.0: /usr/include
-- looking for PCL_COMMON
-- Found PCL_COMMON: /usr/lib/x86_64-linux-gnu/libpcl_common.so
-- looking for PCL_OCTREE
-- Found PCL_OCTREE: /usr/lib/x86_64-linux-gnu/libpcl_octree.so
-- looking for PCL_IO
-- Found PCL_IO: /usr/lib/x86_64-linux-gnu/libpcl_io.so
-- Found PCL: /usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libpthread.so;optimized;/usr/lib/x86_64-linux-gnu/libpcl_common.so;debug;/usr/lib/x86_64-linux-gnu/libpcl_common.so;optimized;/usr/lib/x86_64-linux-gnu/libpcl_octree.so;debug;/usr/lib/x86_64-linux-gnu/libpcl_octree.so;/usr/lib/libOpenNI.so;/usr/lib/libOpenNI2.so;vtkImagingStencil;vtkCommonComputationalGeometry;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkImagingCore;vtkCommonExecutionModel;vtkFiltersAMR;vtkFiltersGeneral;vtkFiltersCore;vtkParallelCore;vtkIOLegacy;vtkIOCore;/usr/lib/x86_64-linux-gnu/libz.so;vtkInteractionWidgets;vtkFiltersHybrid;vtkImagingSources;vtkRenderingCore;vtkCommonColor;vtkFiltersExtraction;vtkFiltersStatistics;vtkImagingFourier;vtkalglib;vtkFiltersGeometry;vtkFiltersSources;vtkFiltersModeling;vtkImagingGeneral;vtkImagingHybrid;vtkIOImage;vtkDICOMParser;vtkmetaio;/usr/lib/x86_64-linux-gnu/libjpeg.so;/usr/lib/x86_64-linux-gnu/libpng.so;/usr/lib/x86_64-linux-gnu/libtiff.so;vtkInteractionStyle;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingFreeType;/usr/lib/x86_64-linux-gnu/libfreetype.so;vtkftgl;vtkRenderingVolume;vtkIOParallelNetCDF;vtkParallelMPI;/usr/lib/x86_64-linux-gnu/libnetcdf_c++.so;/usr/lib/x86_64-linux-gnu/libnetcdf.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;vtkRenderingOpenGL;vtkIOLSDyna;vtkIOXML;vtkIOGeometry;/usr/lib/x86_64-linux-gnu/libjsoncpp.so;vtkIOXMLParser;/usr/lib/x86_64-linux-gnu/libexpat.so;vtkLocalExample;vtkInfovisCore;vtkGeovisCore;vtkInfovisLayout;vtkViewsCore;vtkproj4;/usr/lib/x86_64-linux-gnu/libpython2.7.so;vtkTestingGenericBridge;/usr/lib/libgl2ps.so;verdict;vtkIOMovie;/usr/lib/x86_64-linux-gnu/libtheoraenc.so;/usr/lib/x86_64-linux-gnu/libtheoradec.so;/usr/lib/x86_64-linux-gnu/libogg.so;vtkFiltersImaging;vtkIOMINC;vtkRenderingLOD;vtkViewsQt;vtkGUISupportQt;vtkViewsInfovis;vtkChartsCore;vtkRenderingContext2D;vtkRenderingLabel;vtkRenderingImage;vtkFiltersFlowPaths;vtkxdmf2;/usr/lib/x86_64-linux-gnu/libxml2.so;vtkFiltersReebGraph;vtkViewsContext2D;vtkIOXdmf2;vtkIOAMR;vtkRenderingContextOpenGL;vtkImagingStatistics;vtkIOParallel;vtkFiltersParallel;vtkIONetCDF;vtkexoIIc;vtkGUISupportQtOpenGL;vtkIOParallelLSDyna;vtkFiltersParallelGeometry;vtkGUISupportQtWebkit;vtkIOPLY;vtkWrappingTools;vtkFiltersHyperTree;vtkRenderingVolumeOpenGL;vtkIOExodus;vtkIOPostgreSQL;vtkIOSQL;sqlite3;vtkWrappingJava;vtkFiltersParallelFlowPaths;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersParallelImaging;vtkRenderingParallelLIC;vtkRenderingLIC;vtkInteractionImage;vtkFiltersPython;vtkWrappingPythonCore;vtkIOParallelExodus;vtkFiltersGeneric;vtkIOVideo;vtkRenderingQt;vtkFiltersTexture;vtkIOInfovis;vtkGUISupportQtSQL;vtkRenderingFreeTypeOpenGL;vtkInfovisBoostGraphAlgorithms;vtkRenderingGL2PS;vtkIOGeoJSON;vtkFiltersVerdict;vtkViewsGeovis;vtkIOImport;vtkTestingIOSQL;vtkPythonInterpreter;vtkIOODBC;vtkIOEnSight;vtkIOMySQL;vtkRenderingMatplotlib;vtkDomainsChemistry;vtkIOExport;vtkFiltersParallelMPI;vtkIOParallelXML;vtkTestingRendering;vtkIOMPIParallel;vtkParallelMPI4Py;vtkFiltersSMP;vtkFiltersSelection;vtkIOVPIC;VPIC;vtkImagingMath;vtkImagingMorphological;vtkRenderingParallel;vtkRenderingFreeTypeFontConfig;vtkIOFFMPEG;vtkIOMPIImage;vtkIOGDAL;optimized;/usr/lib/x86_64-linux-gnu/libpcl_io.so;debug;/usr/lib/x86_64-linux-gnu/libpcl_io.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libboost_regex.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/libOpenNI.so;/usr/lib/libOpenNI2.so;vtkImagingStencil;vtkCommonComputationalGeometry;vtkCommonDataModel;vtkCommonMath;vtkCommonCore;vtksys;vtkCommonMisc;vtkCommonSystem;vtkCommonTransforms;vtkImagingCore;vtkCommonExecutionModel;vtkFiltersAMR;vtkFiltersGeneral;vtkFiltersCore;vtkParallelCore;vtkIOLegacy;vtkIOCore;/usr/lib/x86_64-linux-gnu/libz.so;vtkInteractionWidgets;vtkFiltersHybrid;vtkImagingSources;vtkRenderingCore;vtkCommonColor;vtkFiltersExtraction;vtkFiltersStatistics;vtkImagingFourier;vtkalglib;vtkFiltersGeometry;vtkFiltersSources;vtkFiltersModeling;vtkImagingGeneral;vtkImagingHybrid;vtkIOImage;vtkDICOMParser;vtkmetaio;/usr/lib/x86_64-linux-gnu/libjpeg.so;/usr/lib/x86_64-linux-gnu/libpng.so;/usr/lib/x86_64-linux-gnu/libtiff.so;vtkInteractionStyle;vtkRenderingAnnotation;vtkImagingColor;vtkRenderingFreeType;/usr/lib/x86_64-linux-gnu/libfreetype.so;vtkftgl;vtkRenderingVolume;vtkIOParallelNetCDF;vtkParallelMPI;/usr/lib/x86_64-linux-gnu/libnetcdf_c++.so;/usr/lib/x86_64-linux-gnu/libnetcdf.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/lib/libhdf5_hl.so;vtkRenderingOpenGL;vtkIOLSDyna;vtkIOXML;vtkIOGeometry;/usr/lib/x86_64-linux-gnu/libjsoncpp.so;vtkIOXMLParser;/usr/lib/x86_64-linux-gnu/libexpat.so;vtkLocalExample;vtkInfovisCore;vtkGeovisCore;vtkInfovisLayout;vtkViewsCore;vtkproj4;/usr/lib/x86_64-linux-gnu/libpython2.7.so;vtkTestingGenericBridge;/usr/lib/libgl2ps.so;verdict;vtkIOMovie;/usr/lib/x86_64-linux-gnu/libtheoraenc.so;/usr/lib/x86_64-linux-gnu/libtheoradec.so;/usr/lib/x86_64-linux-gnu/libogg.so;vtkFiltersImaging;vtkIOMINC;vtkRenderingLOD;vtkViewsQt;vtkGUISupportQt;vtkViewsInfovis;vtkChartsCore;vtkRenderingContext2D;vtkRenderingLabel;vtkRenderingImage;vtkFiltersFlowPaths;vtkxdmf2;/usr/lib/x86_64-linux-gnu/libxml2.so;vtkFiltersReebGraph;vtkViewsContext2D;vtkIOXdmf2;vtkIOAMR;vtkRenderingContextOpenGL;vtkImagingStatistics;vtkIOParallel;vtkFiltersParallel;vtkIONetCDF;vtkexoIIc;vtkGUISupportQtOpenGL;vtkIOParallelLSDyna;vtkFiltersParallelGeometry;vtkGUISupportQtWebkit;vtkIOPLY;vtkWrappingTools;vtkFiltersHyperTree;vtkRenderingVolumeOpenGL;vtkIOExodus;vtkIOPostgreSQL;vtkIOSQL;sqlite3;vtkWrappingJava;vtkFiltersParallelFlowPaths;vtkFiltersParallelStatistics;vtkFiltersProgrammable;vtkFiltersParallelImaging;vtkRenderingParallelLIC;vtkRenderingLIC;vtkInteractionImage;vtkFiltersPython;vtkWrappingPythonCore;vtkIOParallelExodus;vtkFiltersGeneric;vtkIOVideo;vtkRenderingQt;vtkFiltersTexture;vtkIOInfovis;vtkGUISupportQtSQL;vtkRenderingFreeTypeOpenGL;vtkInfovisBoostGraphAlgorithms;vtkRenderingGL2PS;vtkIOGeoJSON;vtkFiltersVerdict;vtkViewsGeovis;vtkIOImport;vtkTestingIOSQL;vtkPythonInterpreter;vtkIOODBC;vtkIOEnSight;vtkIOMySQL;vtkRenderingMatplotlib;vtkDomainsChemistry;vtkIOExport;vtkFiltersParallelMPI;vtkIOParallelXML;vtkTestingRendering;vtkIOMPIParallel;vtkParallelMPI4Py;vtkFiltersSMP;vtkFiltersSelection;vtkIOVPIC;VPIC;vtkImagingMath;vtkImagingMorphological;vtkRenderingParallel;vtkRenderingFreeTypeFontConfig;vtkIOFFMPEG;vtkIOMPIImage;vtkIOGDAL (Required is at least version "1.3")
-- Configuring done
-- Generating done
-- Build files have been written to: /home/matt/hdd_home/pcl/tutorials/build
As can quite easily been seen, what is outputted is very different to what is shown in the tutorial.
It does create a build file so I can run make which errors and outputs:
[ 50%] Building CXX object CMakeFiles/pcd_write_test.dir/pcd_write.cpp.o
[100%] Linking CXX executable pcd_write_test
/usr/bin/ld: cannot find -lvtkproj4
collect2: error: ld returned 1 exit status
CMakeFiles/pcd_write_test.dir/build.make:330: recipe for target 'pcd_write_test' failed
make[2]: *** [pcd_write_test] Error 1
CMakeFiles/Makefile2:67: recipe for target 'CMakeFiles/pcd_write_test.dir/all' failed
make[1]: *** [CMakeFiles/pcd_write_test.dir/all] Error 2
Makefile:83: recipe for target 'all' failed
make: *** [all] Error 2
I've tried what I can but maybe I lack enough experience to get this all sorted and working.
I also manually installed the package libproj-dev but this did not fix the issue.
Any help would be much appreciated!
The installation is missing python-vtk which is available in the Ubuntu repository.
This contains the required libvtkRenderingPythonTkWidgets package.
Installing it should remove the problem:
sudo apt update
sudo apt install python-vtk
It did for me.
Related
Please help fix the error on Installing Connector/C++ from Source, while "make clean". There are two parts to the question:
Part 1 of the Question: What is the error (cdk/parser/CMakeFiles/cdk_parser.dir/flags.make) missing separator?
[E:\Working\SQL\MySQL\C++>git clone https://github.com/mysql/mysql-connector-cpp
Cloning into 'mysql-connector-cpp'...
remote: Counting objects: 16511, done.
remote: Total 16511 (delta 0), reused 0 (delta 0), pack-reused 16511
Receiving objects: 100% (16511/16511), 7.77 MiB | 48.00 KiB/s, done.
Resolving deltas: 100% (13018/13018), done.
Checking connectivity... done.
Checking out files: 100% (739/739), done.
E:\Working\SQL\MySQL\C++>cd mysql-connector-cpp
E:\Working\SQL\MySQL\C++\mysql-connector-cpp>"C:\Program Files\CMake\bin\cmake.exe" -G "MinGW Makefiles" -DWITH_BOOST="E:\Working\SQL\MySQL\C++\Boost\Unix-Varia
nts\boost_1_63_0"
-- The C compiler identification is GNU 5.1.0
-- The CXX compiler identification is GNU 5.1.0
-- Check for working C compiler: C:/TDM-GCC-64/bin/gcc.exe
-- Check for working C compiler: C:/TDM-GCC-64/bin/gcc.exe -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: C:/TDM-GCC-64/bin/g++.exe
-- Check for working CXX compiler: C:/TDM-GCC-64/bin/g++.exe -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Building on system: Windows-6.3.9600 (AMD64)
Using cmake generator: MinGW Makefiles
Using 64bit generator
Building shared connector library
-- Boost version: 1.63.0
Configuring CDK as part of MySQL_CONCPP project
WITH_TESTS: OFF
CDK include path: E:/Working/SQL/MySQL/C++/mysql-connector-cpp/cdk/include;E:/Working/SQL/MySQL/C++/mysql-connector-cpp/cdk/include
-- Performing Test HAVE_MOVE_SEMANTICS
-- Performing Test HAVE_MOVE_SEMANTICS - Failed
-- Boost version: 1.63.0
Configuring Protobuf build using cmake generator: MinGW Makefiles
-- The C compiler identification is GNU 5.1.0
-- The CXX compiler identification is GNU 5.1.0
-- Check for working C compiler: C:/TDM-GCC-64/bin/gcc.exe
-- Check for working C compiler: C:/TDM-GCC-64/bin/gcc.exe -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: C:/TDM-GCC-64/bin/g++.exe
-- Check for working CXX compiler: C:/TDM-GCC-64/bin/g++.exe -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
Using pthreads for protobuf code
-- Configuring done
-- Generating done
-- Build files have been written to: E:/Working/SQL/MySQL/C++/mysql-connector-cpp/cdk/protobuf
Protobuf include path: E:/Working/SQL/MySQL/C++/mysql-connector-cpp/cdk/protobuf/protobuf-2.6.0/src
WITH_SSL: OFF
-- Performing Test HAVE_STATIC_ASSERT
-- Performing Test HAVE_STATIC_ASSERT - Failed
-- Performing Test HAVE_IS_SAME
-- Performing Test HAVE_IS_SAME - Failed
-- Performing Test HAVE_SHARED_PTR
-- Performing Test HAVE_SHARED_PTR - Failed
-- Looking for sys/endian.h
-- Looking for sys/endian.h - not found
-- Looking for sys/byteorder.h
-- Looking for sys/byteorder.h - not found
-adding static library: cdk_mysqlx_objs
-adding static library: cdk_proto_mysqlx_objs
-adding static library: cdk_foundation_objs
-adding static library: cdk_parser_objs
Merging static libraries into cdk:
- cdk
- protobuf-lite
- cdk_mysqlx_objs
- cdk_proto_mysqlx_objs
- cdk_foundation_objs
- cdk_parser_objs
Wrote configuration header: E:/Working/SQL/MySQL/C++/mysql-connector-cpp/cdk/include/mysql/cdk/config.h
Connector library name: mysqlcppconn2
Connector library will be installed at: lib64
Install location: C:/Users/Aspire/MySQL/MySQL Connector C++ 2.0
-- Configuring done
-- Generating done
-- Build files have been written to: E:/Working/SQL/MySQL/C++/mysql-connector-cpp
E:\Working\SQL\MySQL\C++\mysql-connector-cpp>"C:\Program Files (x86)\GnuWin32\bin\make.exe" clean
cdk/parser/CMakeFiles/cdk_parser.dir/flags.make:6: *** missing separator. Stop.
make\[1\]: *** \[cdk/parser/CMakeFiles/cdk_parser.dir/clean\] Error 2
make: *** \[clean\] Error 2
E:\Working\SQL\MySQL\C++\mysql-connector-cpp>][1]
Please note that Boost has been installed successfully and is working fine as evident from the following output of example.cpp:
$ c++ /e/Working/SQL/MySQL/C++/Boost/Unix-Variants/example.cpp -o example \
> -I /e/Working/SQL/MySQL/C++/Boost/Unix-Variants/boost_1_63_0 \
> /e/Working/SQL/MySQL/C++/Boost/Unix-Variants/boost_1_63_0/Boost-Build/boost/bin.v2/libs/regex/build/gcc-mingw-5.1.0/release/link-static/threading-multi/libboost_regex-mgw51-mt-1_63.a
$ ./example.exe < /e/Working/SQL/MySQL/C++/Boost/Unix-Variants/jayne.txt
Will Success Spoil Rock Hunter?
Part 2 of the Question:
Also, tried in vain the GCC C++/G++ [NOT VC++] connect to MySQL on Windows 8.1 (MinGW/Cygwin) as in the Getting Started with Connector/C++: Usage Examples - Example1:
$ g++ -o Example1 Example1.cpp \
> -I /e/Working/SQL/MySQL/C++/Boost/Unix-Variants/boost_1_63_0 \
> -I/e/Working/SQL/MySQL/C++/mysql-connector-c++-noinstall-1.1.8-winx64/include \
> -I/e/Working/SQL/MySQL/C++/mysql-connector-c++-noinstall-1.1.8-winx64/include/cppconn \
> -L/e/Working/SQL/MySQL/C++/mysql-connector-c++-noinstall-1.1.8-winx64/lib/mysqlcppconn
C:\Users\Aspire\AppData\Local\Temp\ccDVNizG.o:Example1.cpp:(.text+0x4f): undefined reference to `__imp_get_driver_instance'
collect2.exe: error: ld returned 1 exit status
Please help explain the error: undefined reference to `__imp_get_driver_instance', although perhaps the wrong library (format) mysqlcppconn.lib (mysql-connector-c++-noinstall-1.1.8-winx64) linked while compiling, and possibly help resolve this error.
So, I wanted to install Vulkan on ubuntu 16.10.
I decided to follow this guide
Unfortunately at step 9 get to the choppa, I got an error.
cmake .. did not work for me ; this is what happened
Log
ra141#ra141:~$ cd ~/vulkan
ra141#ra141:~/vulkan$ cd gl_vk_chopper
ra141#ra141:~/vulkan/gl_vk_chopper$ cd build
ra141#ra141:~/vulkan/gl_vk_chopper/build$ rm -rf ./*
ra141#ra141:~/vulkan/gl_vk_chopper/build$ export VK_SDK_PATH=/home/ra141/vulkan/VulkanSDK
ra141#ra141:~/vulkan/gl_vk_chopper/build$ cmake ..
-- The C compiler identification is GNU 6.2.0
-- The CXX compiler identification is GNU 6.2.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Processing Project gl_vk_chopper:
-- BASE_DIRECTORY = /home/ra141/vulkan/gl_vk_chopper/..
-- CMAKE_CURRENT_SOURCE_DIR = /home/ra141/vulkan/gl_vk_chopper
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so
-- Found OpenGL: /usr/lib/x86_64-linux-gnu/libGL.so
-- Found GLEW: /home/ra141/vulkan/shared_sources/glew/include
-- Could NOT find GLFW (missing: GLFW_INCLUDE_DIR GLFW_LIBRARY)
-- found Glew source code. Using it instead of library
-- VulkanSDK search paths:
-- VulkanSDK version:
CMake Warning at /home/ra141/vulkan/shared_sources/cmake/FindVulkanSDK.cmake:133 (message):
VULKANSDK not found.
either env. VK_SDK_PATH should be set directly to the right version to use (C:\VulkanSDK\1.0.1.1)
or you can specify in cmake VULKANSDK_LOCATION to the folder where VulkanSDK versions are put (C:\VulkanSDK)
Call Stack (most recent call first):
/home/ra141/vulkan/shared_sources/CMakeLists_include.txt:341 (find_package)
CMakeLists.txt:44 (_add_package_VulkanSDK)
-- Vulkan Root : VULKANSDK_ROOT_DIR-NOTFOUND
-- Vulkan include : VULKANSDK_INCLUDE_DIR-NOTFOUND
-- Vulkan Library : VULKAN_LIB-NOTFOUND
-- Could NOT find VULKANSDK (missing: VULKANSDK_INCLUDE_DIR VULKAN_LIB)
-- --> NOT using package VulkanSDK
-- --> using package AntTweakBar
-- Found ANTTWEAKBAR: /usr/include
CMake Error: The following variables are used in this project, but they are set to NOTFOUND.
Please set them or make sure they are set and tested correctly in the CMake files:
X11_Xcursor_LIB (ADVANCED)
linked by target "gl_vk_chopper" in directory /home/ra141/vulkan/gl_vk_chopper
linked by target "gl_vk_chopper" in directory /home/ra141/vulkan/gl_vk_chopper
linked by target "shared_sources" in directory /home/ra141/vulkan/shared_sources
X11_Xinerama_LIB (ADVANCED)
linked by target "gl_vk_chopper" in directory /home/ra141/vulkan/gl_vk_chopper
linked by target "gl_vk_chopper" in directory /home/ra141/vulkan/gl_vk_chopper
linked by target "shared_sources" in directory /home/ra141/vulkan/shared_sources
-- Configuring incomplete, errors occurred!
See also "/home/ra141/vulkan/gl_vk_chopper/build/CMakeFiles/CMakeOutput.log".
ra141#ra141:~/vulkan/gl_vk_chopper/build$
some help please?
Before running cmake, run the following command export VK_SDK_PATH=/path/to/vulkanSDK/version
Note, that is shall be full path (starting with /)
Be careful to run cmake .. from build folder. From the log, seems you start cmake from subfolder of the build folder. Better yet, clean it before reruning cmake:
cd build
rm -rf ./*
cmake ..
I am using Mac with OS 10.11.6
I am trying to install OpenGV on my Mac. This is a part of dependencies that will be needed to build the OpenSfM library. So, what I did is:
brew install homebrew/science/ceres-solver
brew install boost-python
brew install eigen
git clone https://github.com/paulinus/opengv.git
cd opengv
mkdir build
cd build
cmake .. -DBUILD_TESTS=OFF -DBUILD_PYTHON=ON
make install
But I got this error:
In file included from /Users/hilman_dayo/opengv/src/relative_pose/modules/main.cpp:47:
/Users/hilman_dayo/opengv/include/opengv/math/Sturm.hpp:43:10: fatal error: 'boost/shared_ptr.hpp' file not found
#include <boost/shared_ptr.hpp>
^
1 error generated.
make[2]: *** [CMakeFiles/opengv.dir/src/relative_pose/modules/main.o] Error 1
make[1]: *** [CMakeFiles/opengv.dir/all] Error 2
make: *** [all] Error 2
How can I solve this? Already checked, and the file is there at /usr/local/include/boost/shared_ptr.hpp.
If it is ever needed, this is the output during cmake:
-- The C compiler identification is AppleClang 7.3.0.7030031
-- The CXX compiler identification is AppleClang 7.3.0.7030031
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Checking for C++11 compiler
-- Checking for C++11 compiler - available
-- Performing Test SUPPORTS_STD_CXX11
-- Performing Test SUPPORTS_STD_CXX11 - Success
-- Performing Test SUPPORTS_STD_CXX01
-- Performing Test SUPPORTS_STD_CXX01 - Success
-- Found Eigen: /usr/local/include/eigen3 (Required is at least version "2.91.0")
CMake Warning at /usr/local/Cellar/cmake/3.6.3/share/cmake/Modules/FindBoost.cmake:743 (message):
Imported targets not available for Boost version 106200
Call Stack (most recent call first):
/usr/local/Cellar/cmake/3.6.3/share/cmake/Modules/FindBoost.cmake:842 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/Cellar/cmake/3.6.3/share/cmake/Modules/FindBoost.cmake:1395 (_Boost_MISSING_DEPENDENCIES)
python/CMakeLists.txt:2 (find_package)
-- Boost version: 1.62.0
-- Found the following Boost libraries:
-- python
-- Found PythonLibs: /usr/lib/libpython2.7.dylib (found version "2.7.10")
-- Found PythonInterp: /Users/hilman_dayo/.virtualenvs/cv/bin/python2.7 (found version "2.7.12")
-- Found NumPy: version "1.11.1" /Users/hilman_dayo/.virtualenvs/cv/lib/python2.7/site-packages/numpy/core/include
-- Configuring done
CMake Warning (dev):
Policy CMP0042 is not set: MACOSX_RPATH is enabled by default. Run "cmake
--help-policy CMP0042" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
MACOSX_RPATH is not specified for the following targets:
pyopengv
This warning is for project developers. Use -Wno-dev to suppress it.
-- Generating done
-- Build files have been written to: /Users/hilman_dayo/opengv/build
OK. Comment by #usr1234567 give me a hint to find the answer. After a quick search, all I need to do is just execute this on the command line:
xcode-select --install
I do not have much experience with Omnet,I would like to know if I correctly running the command to run the example.
First when I type make Vanetza, I realized that COHDA_MK2_ROOT is missing, however, the Vanetza compiles without error:
mkdir extern/vanetza/build
cd extern/vanetza/build && cmake -DCMAKE_BUILD_TYPE=Release ..
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Boost version: 1.58.0
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- date_time
-- serialization
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- date_time
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- date_time
-- Found GeographicLib: /usr/local/include (found suitable version "1.46", minimum required is "1.37")
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- serialization
-- Found CryptoPP: /usr/include (found suitable version "5.6.1", minimum required is "5.6.1")
**-- Could NOT find Cohda (missing: COHDA_MK2_ROOT)**
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- system
-- Configuring done
-- Generating done
When I try to run the ./run command with root into the /artery/scenarios/artery, it returns:
./run: 2: ./run: ../../run: not found
When I try to run the opp_run command into the same folder, I can open the Omnet, however, the simulation does not run since the Scenario.ned is missing.
What can I do?
Those run scripts are obsolete by now. You can run simulations through the new run targets, i.e. the scenario from the scenarios/artery folder can be executed by the run_example target in your build directory.
If you have followed the build instructions in Artery's README then it looks like this:
cd build
make run_example
You can also start the simulation environment trough the debug_exampletarget if you have built with CMAKE_BUILD_TYPE set to "Debug",
PS: "Could NOT find Cohda (missing: COHDA_MK2_ROOT)" is not a severe error at all, it just informs about a build configuration without features requiring this optional dependency.
I am trying to compile Shogun on Fedora 23 64bit, but it fails with the errors below. Version 4.0.0 have the same issue.
Can anyone tell me, if there errors are bugs in Shogun or something I have done wrong?
dnf -y install git gcc which gcc-c++ doxygen numpy make cmake wget tar bzip2
cd /tmp
wget http://www.hdfgroup.org/ftp/HDF5/current/src/CMake-hdf5-1.8.16.tar.gz
tar xzf CMake-hdf5-1.8.16.tar.gz
cd CMake-hdf5-1.8.16
./build-unix.sh
cp -a HDF5-1.8.16-Linux/HDF_Group/HDF5/1.8.16/* /usr/local
cd /tmp
wget http://download.mosek.com/stable/7.1.0.41/mosektoolslinux64x86.tar.bz2
tar xjf mosektoolslinux64x86.tar.bz2
mv mosek/7 /root/mosek
export PATH=/root/mosek/tools/platform/linux64x86/bin/:$PATH
cp mosek.lic /root/mosek
cd /root/mosek/tools/platform/linux64x86/python/2/
python setup.py install --user
dnf -y install swig git cmake ccache gdb Pkgconfig NLopt-devel NLopt lpsolve-devel lpsolve ColPack-cli ColPack ColPack-devel arprec-devel arprec libxml2 libxml2-devel bzip2 bzip2-devel snappy-devel snappy protobuf-devel protobuf glpk glpk-devel libcurl-devel libcurl lzo lzo-devel lapack lapack-devel python-devel atlas atlas-devel qd qd-devel
cd /
git clone https://github.com/shogun-toolbox/shogun.git
cd /shogun/ && mkdir build && cd build
cmake -D BUNDLE_EIGEN=ON -D PythonModular=ON ..
make
And here is the output with the errors.
[ 0%] Built target Eigen3
[ 1%] Built target class_list
[ 1%] Built target ChunksProtobuf
[ 2%] Built target HeadersProtobuf
[ 2%] Built target ShogunVersionProtobuf
[ 3%] Generating version header
[ 3%] Built target version
[ 75%] Built target libshogun
[ 75%] Built target shogun
[ 75%] copying SWIG files
[ 75%] Built target python_modular_src
[ 75%] Built target python_doxy2swig
[ 75%] Built target _python_modular
[ 75%] Built target shogun-static
[ 75%] Linking CXX executable balanced_conditional_probability_tree
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_dtrsm'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_dgemm'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_sscal'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_dgemv'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_dasum'
../../../src/shogun/libshogun.so.17.1: undefined reference to `SZ_BufftoBuffDecompress'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_dscal'
../../../src/shogun/libshogun.so.17.1: undefined reference to `SZ_encoder_enabled'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_daxpy'
../../../src/shogun/libshogun.so.17.1: undefined reference to `shogun::CPrimalMosekSOSVM::CPrimalMosekSOSVM()'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_saxpy'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_ddot'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_dnrm2'
../../../src/shogun/libshogun.so.17.1: undefined reference to `shogun::CMosek::CMosek()'
../../../src/shogun/libshogun.so.17.1: undefined reference to `SZ_BufftoBuffCompress'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_sasum'
../../../src/shogun/libshogun.so.17.1: undefined reference to `cblas_dger'
collect2: error: ld returned 1 exit status
examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/build.make:126: recipe for target 'examples/undocumented/libshogun/balanced_conditional_probability_tree' failed
make[2]: *** [examples/undocumented/libshogun/balanced_conditional_probability_tree] Error 1
CMakeFiles/Makefile2:811: recipe for target 'examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/all' failed
make[1]: *** [examples/undocumented/libshogun/CMakeFiles/balanced_conditional_probability_tree.dir/all] Error 2
Makefile:149: recipe for target 'all' failed
make: *** [all] Error 2
[root#2d55f69e8521 build]#
Update
Here is the output from cmake
-- The C compiler identification is GNU 5.1.1
-- The CXX compiler identification is GNU 5.1.1
-- Check for working C compiler: /usr/lib64/ccache/cc
-- Check for working C compiler: /usr/lib64/ccache/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/lib64/ccache/c++
-- Check for working CXX compiler: /usr/lib64/ccache/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found CCache: /usr/bin/ccache
-- Found SWIG: /usr/lib64/ccache/swig (found suitable version "3.0.7", minimum required is "2.0.4")
-- Performing Test _HAS_CXX11_FLAG
-- Performing Test _HAS_CXX11_FLAG - Success
-- Checking C++11 support for "__func__"
-- Checking C++11 support for "__func__": works
-- Checking C++11 support for "atomic"
-- Checking C++11 support for "atomic": works
-- Checking C++11 support for "auto"
-- Checking C++11 support for "auto": works
-- Checking C++11 support for "auto_ret_type"
-- Checking C++11 support for "auto_ret_type": works
-- Checking C++11 support for "class_override_final"
-- Checking C++11 support for "class_override_final": not supported
-- Checking C++11 support for "constexpr"
-- Checking C++11 support for "constexpr": works
-- Checking C++11 support for "cstdint"
-- Checking C++11 support for "cstdint": works
-- Checking C++11 support for "decltype"
-- Checking C++11 support for "decltype": works
-- Checking C++11 support for "initializer_list"
-- Checking C++11 support for "initializer_list": works
-- Checking C++11 support for "lambda"
-- Checking C++11 support for "lambda": works
-- Checking C++11 support for "long_long"
-- Checking C++11 support for "long_long": works
-- Checking C++11 support for "nullptr"
-- Checking C++11 support for "nullptr": works
-- Checking C++11 support for "regex"
-- Checking C++11 support for "regex": works
-- Checking C++11 support for "rvalue-references"
-- Checking C++11 support for "rvalue-references": works
-- Checking C++11 support for "sizeof_member"
-- Checking C++11 support for "sizeof_member": works
-- Checking C++11 support for "static_assert"
-- Checking C++11 support for "static_assert": works
-- Checking C++11 support for "variadic_templates"
-- Checking C++11 support for "variadic_templates": works
-- Looking for C++ include unordered_map
-- Looking for C++ include unordered_map - found
-- Using system's malloc
-- Looking for isfinite
-- Looking for isfinite - not found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isnan
-- Looking for isnan - found
-- Looking for signgam
-- Looking for signgam - found
-- Looking for fdopen
-- Looking for fdopen - found
-- Looking for log2
-- Looking for log2 - found
-- Looking for powl
-- Looking for powl - found
-- Looking for lgammal
-- Looking for lgammal - found
-- Looking for sqrtl
-- Looking for sqrtl - found
-- Looking for finite
-- Looking for finite - found
-- Looking for isfinite
-- Looking for isfinite - not found
-- Looking for isinf
-- Looking for isinf - found
-- Looking for isnan
-- Looking for isnan - found
-- Performing Test HAVE_STD_ISINF
-- Performing Test HAVE_STD_ISINF - Success
-- Performing Test HAVE_STD_ISFINITE
-- Performing Test HAVE_STD_ISFINITE - Success
-- Performing Test HAVE_STD_ISNAN
-- Performing Test HAVE_STD_ISNAN - Success
-- Looking for xmmintrin.h
-- Looking for xmmintrin.h - found
-- Looking for emmintrin.h
-- Looking for emmintrin.h - found
-- Looking for arc4random
-- Looking for arc4random - not found
-- Found GDB: /usr/bin/gdb
-- Could NOT find MOSEK (missing: MOSEK_DIR MOSEK_INCLUDE_DIR MOSEK_LIBRARY)
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.28")
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- A library with BLAS API found.
-- Looking for cheev_
-- Looking for cheev_ - found
-- A library with LAPACK API found.
-- Looking for clapack_dpotrf in /usr/lib64/liblapack.so
-- Looking for clapack_dpotrf in /usr/lib64/liblapack.so - not found
-- Could NOT find ATLAS (missing: ATLAS_LIBRARIES)
-- Found CBLAS: /lib64/libgslcblas.so
-- Looking for cblas_dsyrk in /lib64/libgslcblas.so
-- Looking for cblas_dsyrk in /lib64/libgslcblas.so - found
-- Found GLPK: /lib64/libglpk.so
-- Could NOT find CPLEX (missing: CPLEX_LIBRARY CPLEX_INCLUDE_DIR)
-- Could NOT find OPENCL (missing: OPENCL_LIBRARY OPENCL_INCLUDE_DIR)
-- Could NOT find ViennaCL (missing: VIENNACL_INCLUDE_DIR OPENCL_INCLUDE_DIRS OPENCL_LIBRARIES) (Required is at least version "1.5.0")
-- checking for one of the modules 'libColPack>=1.0.9;ColPack>=1.0.9'
-- Found NLOPT: /usr/lib64/libnlopt_cxx.so
-- Found LPSOLVE: /usr/lib64/liblpsolve55.so
-- Found ColPack: /lib64/libColPack.so
-- Found ARPREC: /lib64/libarprec.so
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.10")
-- Found PythonInterp: /usr/bin/python (found version "2.7.10")
-- checking for one of the modules 'libjson>=0.11;json>=0.11;json-c>=0.11'
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.2")
-- Found HDF5: /usr/local/lib/libhdf5.a (found version "1.8.16")
-- Found CURL: /usr/lib64/libcurl.so (found version "7.43.0")
-- Found ZLIB: /usr/local/lib/libz.a (found version "1.2.8")
-- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found
-- Looking for lzma_auto_decoder in /usr/lib64/liblzma.so
-- Looking for lzma_auto_decoder in /usr/lib64/liblzma.so - found
-- Looking for lzma_easy_encoder in /usr/lib64/liblzma.so
-- Looking for lzma_easy_encoder in /usr/lib64/liblzma.so - found
-- Looking for lzma_lzma_preset in /usr/lib64/liblzma.so
-- Looking for lzma_lzma_preset in /usr/lib64/liblzma.so - found
-- Found LibLZMA: /usr/include (found version "5.2.1")
-- Found SNAPPY: /usr/lib64/libsnappy.so
-- Lzo Library /usr/lib64/liblzo2.so
-- Lzo Include Found in /usr/include
-- Spinlock support found
-- Found PROTOBUF: /usr/lib64/libprotobuf.so
-- Supported backend(s) for linear algebra NOT FOUND/NOT ENABLED
-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.10")
-- Found NumPy: version "1.9.2" /usr/lib64/python2.7/site-packages/numpy/core/include
-- ===================================================================================================================
-- Summary of Configuration Variables
--
-- The following OPTIONAL packages have been found:
* CCache
* GDB
* OpenMP
* BLAS
* LAPACK
* CBLAS
* GLPK
* NLopt
* LpSolve
* ColPack
* ARPREC
* Doxygen
* LibXml2
* HDF5
* CURL
* ZLIB
* BZip2
* LibLZMA
* SNAPPY
* LZO
* Spinlock
* Threads
* Protobuf
-- The following REQUIRED packages have been found:
* SWIG (required version >= 2.0.4)
* PythonLibs
* PythonInterp
* NumPy
-- The following OPTIONAL packages have not been found:
* Mosek
* Atlas
* CPLEX
* ARPACK
* ViennaCL (required version >= 1.5.0)
-- The following REQUIRED packages have not been found:
* OpenCL
-- ===================================================================================================================
-- Enabled Integration
-- OpenCV Integration is OFF - enable with -DOpenCV=ON
-- ===================================================================================================================
-- Enabled Interfaces
-- libshogun is ON
-- python modular is ON
-- octave modular is OFF - enable with -DOctaveModular=ON
-- java modular is OFF - enable with -DJavaModular=ON
-- perl modular is OFF - enable with -DPerlModular=ON
-- ruby modular is OFF - enable with -DRubyModular=ON
-- csharp modular is OFF - enable with -DCSharpModular=ON
-- R modular is OFF - enable with -DRModular=ON
-- lua modular is OFF - enable with -DLuaModular=ON
--
-- Enabled legacy interfaces
-- cmdline static is OFF - enable with -DCmdLineStatic=ON
-- python static is OFF - enable with -DPythonStatic=ON
-- octave static is OFF - enable with -DOctaveStatic=ON
-- matlab static is OFF - enable with -DMatlabStatic=ON
-- R static is OFF - enable with -DRStatic=ON
-- ===================================================================================================================
-- To compile shogun type
-- make
--
-- To install shogun to /usr/local type
-- make install
--
-- or to install to a custom directory
-- make install DESTDIR=/my/special/path
-- (or rerun cmake with -DCMAKE_INSTALL_PREFIX=/my/special/path) to just change the prefix
-- ===================================================================================================================
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/shogun/build
Fedora 23, shogun : # dnf install shogun-devel
Provides version 4.0.1-0.1.git20150808.779c3ad.fc23
If you want a "build experience" : The Fedora 23 source package : shogun-4.0.1-0.1.git20150808.779c3ad.fc23.src.rpm → → includes also "gmock-1.7.0.zip".
Unpacking the source in /home/[name]/ : $ rpm -i shogun-4.0.1-0.1.git20150808.779c3ad.fc23.src.rpm
Building the packages : $ cd rpm*/SPECS/ && rpmbuild -bb shogun.spec
You have to install gsl-devel too, it seems that you didn't.
dnf install gsl-devel