Here's a namesake question for this site.
Why does this piece of code throw a StackOverflow exception in Clojure?
(require [clojure.core.cache :as cache])
(def C (atom (cache/fifo-cache-factory {} :threshold 1E7)))
(doseq [i (range 1 1E6)]
(swap! C cache/miss i i))
And I get the following. I didn't do any concat operations in my code.
This is very reproducible. I'm using clojure 1.7 on Java 8.
Caused by: java.lang.StackOverflowError
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$concat$fn__4215.invoke(core.clj:691)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$concat$fn__4215.invoke(core.clj:691)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
...........
...........
at clojure.core$concat$fn__4215.invoke(core.clj:691)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$concat$fn__4215.invoke(core.clj:691)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$concat$fn__4215.invoke(core.clj:691)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$concat$fn__4215.invoke(core.clj:691)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$concat$fn__4215.invoke(core.clj:691)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
core.cache is making a classic lazy-sequence mistake: concatenating many lazy-sequences together without ever looking at the results. FIFOCache stores a queue of past misses, and when it runs out of space in the cache, it evicts the oldest item in that queue. However, instead of using a real queue structure for this, it uses a lazy sequence and concats to the end, with results similar to those in, for example, Recursive function causing a stack overflow.
I would say this is a bug in core.cache; you can file an issue against its JIRA, or work around it by not using such large FIFO caches: it probably works up to sizes of a couple thousand or so.
Related
I have recently started to work with Clojure. When I run a program in lein, I get the below error:
Exception in thread "main" Syntax error compiling at (bioavailability.clj:79:36).
at clojure.lang.Compiler$InvokeExpr.eval(Compiler.java:3707)
at clojure.lang.Compiler$DefExpr.eval(Compiler.java:457)
at clojure.lang.Compiler.eval(Compiler.java:7181)
at clojure.lang.Compiler.load(Compiler.java:7635)
at clojure.lang.RT.loadResourceScript(RT.java:381)
at clojure.lang.RT.loadResourceScript(RT.java:372)
at clojure.lang.RT.load(RT.java:463)
at clojure.lang.RT.load(RT.java:428)
at clojure.core$load$fn__6824.invoke(core.clj:6126)
at clojure.core$load.invokeStatic(core.clj:6125)
at clojure.core$load.doInvoke(core.clj:6109)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invokeStatic(core.clj:5908)
at clojure.core$load_one.invoke(core.clj:5903)
at clojure.core$load_lib$fn__6765.invoke(core.clj:5948)
at clojure.core$load_lib.invokeStatic(core.clj:5947)
at clojure.core$load_lib.doInvoke(core.clj:5928)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invokeStatic(core.clj:667)
at clojure.core$load_libs.invokeStatic(core.clj:5985)
at clojure.core$load_libs.doInvoke(core.clj:5969)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invokeStatic(core.clj:667)
at clojure.core$require.invokeStatic(core.clj:6007)
at clojure.core$require.doInvoke(core.clj:6007)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojush.core$_main.invokeStatic(core.clj:40)
at clojush.core$_main.doInvoke(core.clj:26)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.lang.Var.invoke(Var.java:384)
at user$eval140.invokeStatic(form-init8949943542898746617.clj:1)
at user$eval140.invoke(form-init8949943542898746617.clj:1)
at clojure.lang.Compiler.eval(Compiler.java:7176)
at clojure.lang.Compiler.eval(Compiler.java:7166)
at clojure.lang.Compiler.load(Compiler.java:7635)
at clojure.lang.Compiler.loadFile(Compiler.java:7573)
at clojure.main$load_script.invokeStatic(main.clj:452)
at clojure.main$init_opt.invokeStatic(main.clj:454)
at clojure.main$init_opt.invoke(main.clj:454)
at clojure.main$initialize.invokeStatic(main.clj:485)
at clojure.main$null_opt.invokeStatic(main.clj:519)
at clojure.main$null_opt.invoke(main.clj:516)
at clojure.main$main.invokeStatic(main.clj:598)
at clojure.main$main.doInvoke(main.clj:561)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.lang.Var.applyTo(Var.java:705)
at clojure.main.main(main.java:37)
Caused by: java.lang.IllegalArgumentException: No matching method findResource found taking 1 args for class jdk.internal.loader.ClassLoaders$AppClassLoader
at clojure.lang.Reflector.invokeMatchingMethod(Reflector.java:127)
at clojure.lang.Reflector.invokeInstanceMethod(Reflector.java:102)
at local_file$find_resource.invokeStatic(local_file.clj:30)
at local_file$find_resource.invoke(local_file.clj:26)
at local_file$project_dir.invokeStatic(local_file.clj:39)
at local_file$project_dir.invoke(local_file.clj:34)
at local_file$project_dir.invokeStatic(local_file.clj:47)
at local_file$project_dir.invoke(local_file.clj:34)
at local_file$file_STAR_.invokeStatic(local_file.clj:55)
at local_file$file_STAR_.invoke(local_file.clj:51)
at local_file$slurp_STAR_.invokeStatic(local_file.clj:60)
at local_file$slurp_STAR_.doInvoke(local_file.clj:57)
at clojure.lang.RestFn.invoke(RestFn.java:410)
at clojush.problems.regression.bioavailability$read_data.invokeStatic(bioavailability.clj:51)
at clojush.problems.regression.bioavailability$read_data.invoke(bioavailability.clj:49)
at clojush.problems.regression.bioavailability$define_fitness_cases.invokeStatic(bioavailability.clj:63)
at clojush.problems.regression.bioavailability$define_fitness_cases.invoke(bioavailability.clj:57)
at clojure.lang.AFn.applyToHelper(AFn.java:152)
at clojure.lang.AFn.applyTo(AFn.java:144)
at clojure.lang.Compiler$InvokeExpr.eval(Compiler.java:3702)
... 46 more
The code I am trying to run is:
https://github.com/lspector/Clojush/blob/master/src/clojush/problems/regression/bioavailability.clj
and the command that I use is:
lein run clojush.problems.regression.bioavailability
Thanks in advance for your kind help.
I tried to run each section of the main code seperately to understand where the problem exactly is but it was not succesful.
The problem is that the code in bioavailability.clj calls the function find-resource that in turn calls a method findResource that (i) is protected and (ii) expects a string but is passed a File.
To fix this, I did two things:
First, copied the function find-resource from the local-file library and renamed it get-resource and replaced the call to findResource by a call to getResource which is public. I inserted this code just above the read-data function in bioavailability.clj.
Second, I changed a line in read-data that calls the slurp* (that was (slurp* "src/clojush/problems/regression/data/bioavailability.txt")) function to instead call (slurp (get-resource "../src/clojush/problems/regression/data/bioavailability.txt")) by calling slurp on the result of the get-resource function to which I pass a path that I have prepended with ../. The prepended path is relative to the default resources directory.
The modified code is
;; I added this function
(defn get-resource
[file]
(loop [cl (.. Thread currentThread getContextClassLoader)]
(when cl
(if-let [url (.getResource cl file)]
url
(recur (.getParent cl))))))
(defn read-data []
"Reads data from data/bioavailability.txt into a sequence of sequences."
;; This line has been updated:
(let [f (slurp (get-resource "../src/clojush/problems/regression/data/bioavailability.txt"))
lines (csv/parse-csv f :delimiter \tab)]
(map #(map (fn [x] (float (read-string x)))
%)
lines)))
I'm trying to run boot repl and I get the following error.
java.lang.Thread.run Thread.java: 832
java.util.concurrent.ThreadPoolExecutor$Worker.run ThreadPoolExecutor.java: 630
java.util.concurrent.ThreadPoolExecutor.runWorker ThreadPoolExecutor.java: 1130
java.util.concurrent.FutureTask.run FutureTask.java: 264
...
clojure.core/binding-conveyor-fn/fn core.clj: 1938
Skipped a lot of lines here
java.lang.ClassLoader.loadClass ClassLoader.java: 589
...
java.net.URLClassLoader.findClass URLClassLoader.java: 435
java.lang.ClassNotFoundException: sun.misc.Launcher
clojure.lang.ExceptionInfo: sun.misc.Launcher
I was following a guide on how to set up boot from spacemacs. The information there was outdated or wrong. The problem was that in my ~/.boot/profile.boot To solve the issue I had to change dependencies from what was on spacemacs site to what was on refactor-nrepl.
(require 'boot.repl)
(swap! boot.repl/*default-dependencies* conj
'[refactor-nrepl "2.5.1"]
'[cider/cider-nrepl "0.25.9"])
(swap! boot.repl/*default-middleware* conj
'refactor-nrepl.middleware/wrap-refactor)
I tried some clojure tutorial. I copied dependencies part to my project.clj. And I made a mistake. Instead of "1.6.0" version of clojure I put "1.7.0". You can see all 'dependencies' here:
:dependencies [[org.clojure/clojure "1.7.0"]
[org.clojure/core.async "0.1.346.0-17112a-alpha"]
[compojure "1.3.1"]
[ring/ring-core "1.3.2" :exclusions [javax.servlet/servlet-api]]
[ring/ring-servlet "1.3.2" :exclusions [javax.servlet/servlet-api]]
[ring/ring-defaults "0.1.2" :exclusions [javax.servlet/servlet-api]]
[cc.qbits/jet "0.5.4"]]
With this mistake I got this after 'lein run':
Exception in thread "main" clojure.lang.ArityException: Wrong number of args (2) passed to: StringReader, compiling:(abnf.clj:189:28)
at clojure.lang.Compiler$InvokeExpr.eval(Compiler.java:3628)
at clojure.lang.Compiler$InvokeExpr.eval(Compiler.java:3622)
at clojure.lang.Compiler$DefExpr.eval(Compiler.java:439)
at clojure.lang.Compiler.eval(Compiler.java:6787)
at clojure.lang.Compiler.load(Compiler.java:7227)
at clojure.lang.RT.loadResourceScript(RT.java:371)
at clojure.lang.RT.loadResourceScript(RT.java:362)
at clojure.lang.RT.load(RT.java:446)
at clojure.lang.RT.load(RT.java:412)
at clojure.core$load$fn__5448.invoke(core.clj:5866)
at clojure.core$load.doInvoke(core.clj:5865)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invoke(core.clj:5671)
at clojure.core$load_lib$fn__5397.invoke(core.clj:5711)
at clojure.core$load_lib.doInvoke(core.clj:5710)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$load_libs.doInvoke(core.clj:5749)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$require.doInvoke(core.clj:5832)
at clojure.lang.RestFn.invoke(RestFn.java:805)
at instaparse.core$eval9510$loading__5340__auto____9511.invoke(core.clj:1)
at instaparse.core$eval9510.invoke(core.clj:1)
at clojure.lang.Compiler.eval(Compiler.java:6782)
at clojure.lang.Compiler.eval(Compiler.java:6771)
at clojure.lang.Compiler.load(Compiler.java:7227)
at clojure.lang.RT.loadResourceScript(RT.java:371)
at clojure.lang.RT.loadResourceScript(RT.java:362)
at clojure.lang.RT.load(RT.java:446)
at clojure.lang.RT.load(RT.java:412)
at clojure.core$load$fn__5448.invoke(core.clj:5866)
at clojure.core$load.doInvoke(core.clj:5865)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invoke(core.clj:5671)
at clojure.core$load_lib$fn__5397.invoke(core.clj:5711)
at clojure.core$load_lib.doInvoke(core.clj:5710)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$load_libs.doInvoke(core.clj:5749)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$require.doInvoke(core.clj:5832)
at clojure.lang.RestFn.invoke(RestFn.java:436)
at clout.core$eval9504$loading__5340__auto____9505.invoke(core.clj:1)
at clout.core$eval9504.invoke(core.clj:1)
at clojure.lang.Compiler.eval(Compiler.java:6782)
at clojure.lang.Compiler.eval(Compiler.java:6771)
at clojure.lang.Compiler.load(Compiler.java:7227)
at clojure.lang.RT.loadResourceScript(RT.java:371)
at clojure.lang.RT.loadResourceScript(RT.java:362)
at clojure.lang.RT.load(RT.java:446)
at clojure.lang.RT.load(RT.java:412)
at clojure.core$load$fn__5448.invoke(core.clj:5866)
at clojure.core$load.doInvoke(core.clj:5865)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invoke(core.clj:5671)
at clojure.core$load_lib$fn__5397.invoke(core.clj:5711)
at clojure.core$load_lib.doInvoke(core.clj:5710)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$load_libs.doInvoke(core.clj:5749)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$require.doInvoke(core.clj:5832)
at clojure.lang.RestFn.invoke(RestFn.java:482)
at compojure.core$eval9322$loading__5340__auto____9323.invoke(core.clj:1)
at compojure.core$eval9322.invoke(core.clj:1)
at clojure.lang.Compiler.eval(Compiler.java:6782)
at clojure.lang.Compiler.eval(Compiler.java:6771)
at clojure.lang.Compiler.load(Compiler.java:7227)
at clojure.lang.RT.loadResourceScript(RT.java:371)
at clojure.lang.RT.loadResourceScript(RT.java:362)
at clojure.lang.RT.load(RT.java:446)
at clojure.lang.RT.load(RT.java:412)
at clojure.core$load$fn__5448.invoke(core.clj:5866)
at clojure.core$load.doInvoke(core.clj:5865)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invoke(core.clj:5671)
at clojure.core$load_lib$fn__5397.invoke(core.clj:5711)
at clojure.core$load_lib.doInvoke(core.clj:5710)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$load_libs.doInvoke(core.clj:5749)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$require.doInvoke(core.clj:5832)
at clojure.lang.RestFn.invoke(RestFn.java:512)
at server.core$eval20$loading__5340__auto____21.invoke(core.clj:1)
at server.core$eval20.invoke(core.clj:1)
at clojure.lang.Compiler.eval(Compiler.java:6782)
at clojure.lang.Compiler.eval(Compiler.java:6771)
at clojure.lang.Compiler.load(Compiler.java:7227)
at clojure.lang.RT.loadResourceScript(RT.java:371)
at clojure.lang.RT.loadResourceScript(RT.java:362)
at clojure.lang.RT.load(RT.java:446)
at clojure.lang.RT.load(RT.java:412)
at clojure.core$load$fn__5448.invoke(core.clj:5866)
at clojure.core$load.doInvoke(core.clj:5865)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invoke(core.clj:5671)
at clojure.core$load_lib$fn__5397.invoke(core.clj:5711)
at clojure.core$load_lib.doInvoke(core.clj:5710)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$load_libs.doInvoke(core.clj:5749)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invoke(core.clj:632)
at clojure.core$require.doInvoke(core.clj:5832)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at user$eval5$fn__7.invoke(form-init2532813080817058510.clj:1)
at user$eval5.invoke(form-init2532813080817058510.clj:1)
at clojure.lang.Compiler.eval(Compiler.java:6782)
at clojure.lang.Compiler.eval(Compiler.java:6772)
at clojure.lang.Compiler.load(Compiler.java:7227)
at clojure.lang.Compiler.loadFile(Compiler.java:7165)
at clojure.main$load_script.invoke(main.clj:275)
at clojure.main$init_opt.invoke(main.clj:280)
at clojure.main$initialize.invoke(main.clj:308)
at clojure.main$null_opt.invoke(main.clj:343)
at clojure.main$main.doInvoke(main.clj:421)
at clojure.lang.RestFn.invoke(RestFn.java:421)
at clojure.lang.Var.invoke(Var.java:383)
at clojure.lang.AFn.applyToHelper(AFn.java:156)
at clojure.lang.Var.applyTo(Var.java:700)
at clojure.main.main(main.java:37)
Caused by: clojure.lang.ArityException: Wrong number of args (2) passed to: StringReader
at clojure.lang.AFn.throwArity(AFn.java:429)
at clojure.lang.AFn.invoke(AFn.java:36)
at instaparse.cfg$eval10231$safe_read_string__10232.invoke(cfg.clj:163)
at instaparse.cfg$process_string.invoke(cfg.clj:180)
at instaparse.cfg$build_rule.invoke(cfg.clj:217)
at clojure.core$map$fn__4553.invoke(core.clj:2622)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$apply.invoke(core.clj:630)
at instaparse.cfg$build_rule.invoke(cfg.clj:215)
at clojure.core$map$fn__4553.invoke(core.clj:2622)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$apply.invoke(core.clj:630)
at instaparse.cfg$build_rule.invoke(cfg.clj:211)
at instaparse.cfg$build_rule.invoke(cfg.clj:214)
at clojure.core$map$fn__4553.invoke(core.clj:2622)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$apply.invoke(core.clj:630)
at instaparse.cfg$build_rule.invoke(cfg.clj:215)
at clojure.core$map$fn__4553.invoke(core.clj:2622)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core$apply.invoke(core.clj:630)
at instaparse.cfg$build_rule.invoke(cfg.clj:211)
at instaparse.cfg$build_rule.invoke(cfg.clj:207)
at clojure.core$map$fn__4553.invoke(core.clj:2622)
at clojure.lang.LazySeq.sval(LazySeq.java:40)
at clojure.lang.LazySeq.seq(LazySeq.java:49)
at clojure.lang.RT.seq(RT.java:507)
at clojure.core$seq__4128.invoke(core.clj:137)
at clojure.core.protocols$seq_reduce.invoke(protocols.clj:30)
at clojure.core.protocols$fn__6506.invoke(protocols.clj:101)
at clojure.core.protocols$fn__6452$G__6447__6465.invoke(protocols.clj:13)
at clojure.core$reduce.invoke(core.clj:6519)
at clojure.core$into.invoke(core.clj:6600)
at instaparse.cfg$ebnf.invoke(cfg.clj:277)
at clojure.lang.AFn.applyToHelper(AFn.java:154)
at clojure.lang.AFn.applyTo(AFn.java:144)
at clojure.lang.Compiler$InvokeExpr.eval(Compiler.java:3623)
... 125 more
So It took some time to realize that I have wrong clojure version.
And for this mistake was absolutly not clear from stack trace that I got.
Does anybody can help explain me what does this stack traces actually tells? How I should understand that clojure version is not good? BTW Why it is not good version?
That stacktrace is unfortunate. It doesn't help much in understanding what's happening. The most we can say without digging too deep is "something is wrong while compiling instaparse". You don't have to know what instaparse is, but it's used by compojure.
The thing is: the clojure version is not wrong. It's just that compojure 1.3.1 is not compatible with clojure 1.7.0. Clojure 1.7.0 is the last stable version. You can use 1.6.0 or 1.7.0. It's just that if you are going to use clojure 1.7.0, then the compojure version is wrong (of course you didn't have to know that). Try with [compojure "1.3.4"] on clojure 1.7.0, everything should be fine.
From Clojure Stack Traces for the Uninitiated I'll take some guidance when facing with a clojure stacktrace:
Find the ultimate cause: Find the last line that starts with "Caused by". That's where the exception originated.
Look for your namespace (and I'll add, if there's any, look for a namespace different than "clojure"): In this case, it will make us to say "oh, something is wrong with instaparse!".
Break out your decoder ring (or find the $ sign): Here we have a bit of knowledge on how clojure compiles our code. One important thing to know is that every function is compiled into a separate class, and many times we can identify the function by what's following the $ sign. In this case, from instaparse.cfg$process_string.invoke(cfg.clj:180) we can assume the issue is in the line 180 of cfg.clj in instaparse, where the process_string* function is defined.
* most probably it's process-string because of name munging, but that's another story.
I'm trying to include midje "facts" alongside my source code in a project which uses aot. Trying to access the repl or run the project results in the following error, I've included a minimal sample project which reproduces the issue. Thanks for any help!
project.clj
(defproject test-midje "0.1.1"
:description "Why doesn't midje work?"
:min-lein-version "2.0.0"
:source-paths ["src/clj"]
:repl-options {
:timeout 120000
}
:main org.midjetest.core
:profiles {:dev {:dependencies [[midje "1.5.0"]]}}
:aot [org.midjetest.core])
src/clj/org/midjetest/core.clj
(ns org.midjetest.core
(:require [midje.sweet :refer [fact facts]]))
(defn addtwo [a] (+ 2 a))
(fact "addtwo adds two to numbers"
(addtwo 3) => 5)
(defn -main
"testing with main"
([] (println (addtwo 5))))
lein run or lein repl give the following error:
$ lein repl
Compiling org.midjetest.core
Exception in thread "main" java.lang.ExceptionInInitializerError
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:270)
at clojure.lang.RT.loadClassForName(RT.java:2056)
at clojure.lang.RT.load(RT.java:419)
at clojure.lang.RT.load(RT.java:400)
at clojure.core$load$fn__4890.invoke(core.clj:5415)
at clojure.core$load.doInvoke(core.clj:5414)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invoke(core.clj:5227)
at clojure.core$load_lib.doInvoke(core.clj:5264)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invoke(core.clj:603)
at clojure.core$load_libs.doInvoke(core.clj:5298)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invoke(core.clj:603)
at clojure.core$require.doInvoke(core.clj:5381)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at org.midjetest.core$loading__4784__auto__.invoke(core.clj:1)
at org.midjetest.core__init.load(Unknown Source)
at org.midjetest.core__init.<clinit>(Unknown Source)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:270)
at clojure.lang.RT.loadClassForName(RT.java:2056)
at clojure.lang.RT.load(RT.java:419)
at clojure.lang.RT.load(RT.java:400)
at clojure.core$load$fn__4890.invoke(core.clj:5415)
at clojure.core$load.doInvoke(core.clj:5414)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at clojure.core$load_one.invoke(core.clj:5227)
at clojure.core$load_lib.doInvoke(core.clj:5264)
at clojure.lang.RestFn.applyTo(RestFn.java:142)
at clojure.core$apply.invoke(core.clj:603)
at clojure.core$load_libs.doInvoke(core.clj:5298)
at clojure.lang.RestFn.applyTo(RestFn.java:137)
at clojure.core$apply.invoke(core.clj:603)
at clojure.core$require.doInvoke(core.clj:5381)
at clojure.lang.RestFn.invoke(RestFn.java:408)
at user$eval5.invoke(form-init9180276290836069038.clj:1)
at clojure.lang.Compiler.eval(Compiler.java:6511)
at clojure.lang.Compiler.eval(Compiler.java:6500)
at clojure.lang.Compiler.eval(Compiler.java:6500)
at clojure.lang.Compiler.load(Compiler.java:6952)
at clojure.lang.Compiler.loadFile(Compiler.java:6912)
at clojure.main$load_script.invoke(main.clj:283)
at clojure.main$init_opt.invoke(main.clj:288)
at clojure.main$initialize.invoke(main.clj:316)
at clojure.main$null_opt.invoke(main.clj:349)
at clojure.main$main.doInvoke(main.clj:427)
at clojure.lang.RestFn.invoke(RestFn.java:421)
at clojure.lang.Var.invoke(Var.java:419)
at clojure.lang.AFn.applyToHelper(AFn.java:163)
at clojure.lang.Var.applyTo(Var.java:532)
at clojure.main.main(main.java:37)
Caused by: java.lang.NullPointerException
at java.util.concurrent.ConcurrentHashMap.hash(ConcurrentHashMap.java:333)
at java.util.concurrent.ConcurrentHashMap.get(ConcurrentHashMap.java:988)
at clojure.lang.Namespace.find(Namespace.java:188)
at clojure.core$find_ns.invoke(core.clj:3659)
at clojure.core$the_ns.invoke(core.clj:3691)
at clojure.core$ns_name.invoke(core.clj:3698)
at midje.Bootstrap$bootstrap.invoke(Bootstrap.clj:8)
at midje.sweet__init.load(Unknown Source)
at midje.sweet__init.<clinit>(Unknown Source)
... 53 more
Exception in thread "Thread-4" clojure.lang.ExceptionInfo: Subprocess failed {:exit-code 1}
at clojure.core$ex_info.invoke(core.clj:4327)
at leiningen.core.eval$fn__3532.invoke(eval.clj:226)
at clojure.lang.MultiFn.invoke(MultiFn.java:231)
at leiningen.core.eval$eval_in_project.invoke(eval.clj:326)
at clojure.lang.AFn.applyToHelper(AFn.java:167)
at clojure.lang.AFn.applyTo(AFn.java:151)
at clojure.core$apply.invoke(core.clj:619)
at leiningen.repl$server$fn__7443.invoke(repl.clj:201)
at clojure.lang.AFn.applyToHelper(AFn.java:159)
at clojure.lang.AFn.applyTo(AFn.java:151)
at clojure.core$apply.invoke(core.clj:617)
at clojure.core$with_bindings_STAR_.doInvoke(core.clj:1788)
at clojure.lang.RestFn.invoke(RestFn.java:425)
at clojure.lang.AFn.applyToHelper(AFn.java:163)
at clojure.lang.RestFn.applyTo(RestFn.java:132)
at clojure.core$apply.invoke(core.clj:621)
at clojure.core$bound_fn_STAR_$fn__4102.doInvoke(core.clj:1810)
at clojure.lang.RestFn.invoke(RestFn.java:397)
at clojure.lang.AFn.run(AFn.java:24)
at java.lang.Thread.run(Thread.java:744)
The root problem here is that Bootstrap.clj is just not going to work when AOT-ed; it depends on some namespace being loaded before it is; however the static initializers for clojure AOTed classes are more or less equivalent to:
(binding [clojure.core/*ns* nil
clojure.core/*fn-loader* loader
clojure.core/*read-eval* true]
(my.class/load))
Since Bootstrap/bootstrap is called before midje.sweet defines it's own ns (https://github.com/marick/Midje/blob/master/src/midje/sweet.clj#L2), *ns* stays null, and (ns-name *ns*) crashes.
I don't think you can make this work, unless the bootstrap code for midje changes. I'd recommend putting your tests into separate files, and not aot-ing those.
I'm writing a clojure app for internal use, and I want the config file to be in clojure too. I have defined a few macros to make writing the config file easier, but when I try to eval the data from the config file, it cant find my macros. This works fine from the REPL however. For example, I'm using
(load-string "/path/to/config")
I get this error:
Exception in thread "main" java.lang.RuntimeException: Unable to resolve symbol: defcmd in this context, compiling:(null:1)
at clojure.lang.Compiler.analyze(Compiler.java:6235)
at clojure.lang.Compiler.analyze(Compiler.java:6177)
at clojure.lang.Compiler$InvokeExpr.parse(Compiler.java:3452)
at clojure.lang.Compiler.analyzeSeq(Compiler.java:6411)
at clojure.lang.Compiler.analyze(Compiler.java:6216)
at clojure.lang.Compiler.analyze(Compiler.java:6177)
at clojure.lang.Compiler.eval(Compiler.java:6469)
at clojure.lang.Compiler.load(Compiler.java:6902)
at clojure.lang.Compiler.load(Compiler.java:6872)
at clojure.core$load_reader.invoke(core.clj:3625)
at clojure.core$load_string.invoke(core.clj:3635)
at serverStats.core$load_config.invoke(core.clj:67)
at serverStats.core$_main.doInvoke(core.clj:78)
at clojure.lang.RestFn.invoke(RestFn.java:397)
at clojure.lang.Var.invoke(Var.java:397)
at user$eval109.invoke(NO_SOURCE_FILE:1)
at clojure.lang.Compiler.eval(Compiler.java:6465)
at clojure.lang.Compiler.eval(Compiler.java:6455)
at clojure.lang.Compiler.eval(Compiler.java:6431)
at clojure.core$eval.invoke(core.clj:2795)
at clojure.main$eval_opt.invoke(main.clj:296)
at clojure.main$initialize.invoke(main.clj:315)
at clojure.main$null_opt.invoke(main.clj:348)
at clojure.main$main.doInvoke(main.clj:426)
at clojure.lang.RestFn.invoke(RestFn.java:421)
at clojure.lang.Var.invoke(Var.java:405)
at clojure.lang.AFn.applyToHelper(AFn.java:163)
at clojure.lang.Var.applyTo(Var.java:518)
at clojure.main.main(main.java:37)
Caused by: java.lang.RuntimeException: Unable to resolve symbol: defcmd in this context
at clojure.lang.Util.runtimeException(Util.java:156)
at clojure.lang.Compiler.resolveIn(Compiler.java:6720)
at clojure.lang.Compiler.resolve(Compiler.java:6664)
at clojure.lang.Compiler.analyzeSymbol(Compiler.java:6625)
at clojure.lang.Compiler.analyze(Compiler.java:6198)
... 28 more
However, running that same command from the REPL in my namespace works fine.
You probably want some more sophisticated loading scheme. I assume you want to put the configuration into a dedicated configuration namespace. It will only contain the configuration. Helper functions are held in a separate namespace use'd in the configuration namespace.
(defn setup-config-space
[]
(binding [*ns* *ns*]
(in-ns 'config.namespace)
(refer-clojure)
(use 'config.helpers)))
(defn load-config
[path]
(binding [*ns* *ns*]
(in-ns 'config.namespace)
(load-file path)))
See the example use:
..ojure/1.4.0-alpha3% cat config/helpers.clj
(ns config.helpers)
(defmacro defcmd
[x]
`(defn ~x [] "Hello"))
..ojure/1.4.0-alpha3% cat x.clj
(defcmd foo)
..ojure/1.4.0-alpha3% java -cp .:clojure-1.4.0-alpha3.jar clojure.main -r
Clojure 1.4.0-alpha3
user=> ; Paste above functions
#'user/setup-config-space
#'user/load-config
user=> (setup-config-space)
nil
user=> (load-config "x.clj")
#'config.namespace/foo
user=> (config.namespace/foo)
"Hello"