linking boost filesystem and boost iostream libraries in ubuntu 14.04 - c++

I downloaded boost 1.61 and extracted it at /usr/local/boost_1_61_0 and while installing i set the prefix path to /usr/local/ where all the boost libraries are installed. I am trying to install FRESCO tool for DNA data compression which is built using Boost c++ libraries (Downloaded from https://github.com/hubsw/FRESCO). They have given make utility to install FRESCO tool.
But when I try to run make, I get errors regarding BOOST:FILESYSTEM and BOOST:IOSTREAM libraries as follows
undefined reference to `boost::iostreams::detail::gzip_header::reset()'
undefined reference to boost::iostreams::detail::zlib_base::~zlib_base()'
undefined reference to `boost::filesystem::detail::create_directories(boost::filesystem::path const&, boost::system::error_code*)'
and many more related to boost iostream and filesystem.
In FRESCO they mentioned they require BOOST 1.51(later), boost filesystem,boost iostream, boost threading-mt.
Can someone please suggest me where I am going wrong? How to link the boost filesystem/iostream if i am using make utility of ubuntu to install FRESCO tool?

I'm trying to compile boost as dependency for my project and I get similar errors.
I see two issues for your case:
I don't use FRESCO, but from its makefile I see -lboost_system -lboost_filesystem -lboost_iostreams, so it expects a global Boost installation. You don't need to compile Boost for that, you can use the packaged versions of your system. In ubuntu they can be installed with sudo apt-get install libboost-dev libboost-filesystem-dev libboost-iostreams-dev.
If you really want to compile Boost, that error message is about a part of boost that needs extra configuration for compiling it (compression filters). It tries to link to an object with some definitions that are not compiled by default (It would probably link correctly if FRESCO didn't use compression filters). Assuming that you are compiling with Boost.Build, for Boost.Iostreams this issue is explained (not very well IMO) in https://www.boost.org/doc/libs/1_61_0/libs/iostreams/doc/installation.html :
To build with Boost.Build, run bjam from the directory libs/iostreams/build, or from the Boost root directory. If you want to use the compression filters, you may need to set several Boost.Build variables indicating where the source files or pre-built binaries are located.
EDIT
There are other alternatives to compile Boost.Iostreams:
If you have installed bzip and zlib in the system, Boost.Build autoconfigures the compilation of those compression filters. In ubuntu, do sudo apt-get install libbz2-dev zlib1g-dev (in xenial, I haven't checked if the names are different in other versions).
If you can't install zlib and libbgzip in the system, and you compiled them yourself, put this in a file tools/build/src/user-config.jam inside the downloaded folder of boost:
using zlib : 1.2.11 : <include>/path-to-your-compilation/zlib-1.2.11 <search>/path-to-your-compilation/zlib-1.2.11 ;
using bzip2 : 1.0.6 : <include>/path-to-your-compilation/bzip2-1.0.6 <search>/path-to-your-compilation/bzip2-1.0.6 ;
Just replace path-to-your-compilation.
Then, do ./bootstrap.sh --with-libraries=filesystem,iostreams and ./b2.
Documentation for this (notice I'm using Boost 1.65):
user-config.jam: https://www.boost.org/doc/libs/1_65_1/doc/html/bbv2/reference.html#bbv2.reference.tools.libraries.zlib
general Boost install: https://www.boost.org/doc/libs/1_65_1/more/getting_started/unix-variants.html#prepare-to-use-a-boost-library-binary

Related

Cannot find .a static library files after building boost with macports, I only have dylib

Using Xcode 7.1...
Built using command sudo port install boost +universal
I am under the impression that if I want to distribute my software, .dylib files will be required for every user because dylib is a dynamic library, while .a will be statically linked and so it will be embedded in the final product. Is this true? If so, how do I get .a files?
I'm trying to make use of regex and filesystem libraries.
There is a MacPorts variant "no_static" that is enabled by default. To build the static library for boost, use (assuming you still require a universal binary)
sudo port install boost +universal -no_static
I found this easily after doing
port info boost
port variants boost
Yes you need .a files. Use brew instead.
brew install boost --universal

Linking with a newer library rather than the old one

I am trying to compile the Point Cloud Library from source (http://pointclouds.org/). After running cmake and make, I receive the following linking error:
Linking CXX executable ../../bin/pcl_convert_pcd_ascii_binary
../../lib/libpcl_io.so.1.7.2: undefined reference to `png_set_longjmp_fn'
As a newbie, I'm not sure what this error means, but I am assuming: the executable file plc_convert_pcd_ascii_binary which it is trying to build, needs to be linked to the library libpcl_io.so.1.7.2, but this library contains the function png_set_longjump_fun, and the definition of this function cannot be found?
So, I have tried looked at some similar questions on Stack Overflow, and it turns out that png_set_longjump_fun is contained in the libpng library, but was only introduced after libpng-1.4.x. After running dpkg -l | grep libpng*, I get the following output:
ii libpng12-0:amd64 1.2.50-1ubuntu2 amd64 PNG library - runtime
ii libpng12-dev 1.2.50-1ubuntu2 amd64 PNG library - development
So it looks like I need to upgrade from libpng12-dev to at least libpng14-dev. From the libpng website, I see that I can download the source for the latest version (but the latest version I can get through apt-get is only libpng12-dev). But I am worried that there may be some conflictions if I have one version installed via apt-get, and another version installed manually. However, uninstalling libpng12-dev may cause issues if there are packages which depend on this, but are not compatible with the newer version.
Therefore, what I would like to know, is whether I should uninstall/purge libpng12-dev, and then install the new version manually, or to simply install the new version whilst keeping the old version. And if I do the latter, how can I be sure that the PCL binary I am trying to compile, will link with this new library, rather than the old one?
Thanks :)
If you compile from source, you probably don't even need to install. Once you have compiled libpng, set the CMAKE_PREFIX_PATH when you compile PCL to point at the right place in the libpng build tree. This generally is what is done with cmake, so should work in this case. More information:
http://www.cmake.org/cmake/help/v3.0/variable/CMAKE_PREFIX_PATH.html
https://blogs.kde.org/2008/12/12/how-get-cmake-find-what-you-want-it
cmake - find_library - custom library location
How to point cmake at specific directory for library?

how to get libtorrent to see boost?

I am compiling libtorrent-rasterbar-0.16.16 with msys and mingw.
./configure runs fine, until it gets to the boost library check.
I have boost 1.51, and I set $BOOST_ROOT, but that did not work.
Checking for boost libraries:
checking for boostlib >= 1.36... expr: syntax error
configure: We could not detect the boost libraries (version 1.36 or higher). If
you have a staged boost library (still not installed) please specify $BOOST_ROOT
in your environment and do not give a PATH to --with-boost option. If you are
sure you have boost installed, then check your version number looking in <boost/
version.hpp>. See http://randspringer.de/boost for more documentation.
checking whether the Boost::System library is available... no
configure: error: Boost.System library not found. Try using --with-boost-system=
lib
I tried the --with-boost-system= option, and that did not work either. I also copied libboost_system-mgw47-mt-1_51.a to the same directory as libtorrent... but it did not work.
What am I missing?
I have boost 1.51, and I set $BOOST_ROOT, but that did not work
It is very likely that configure can’t find boost header files. What you need is both the library and the sources, and your best avenue is still setting BOOST_ROOT.
On a linux box you would be installing the boost-devel package, but for mingw you should download the boost sources directly and unpack them. Then please make sure you are running,
BOOST_ROOT=/path/to/boost_1_51 ./configure

Locating Boost Libraries in Ubuntu

I want to build an autotools project which is making use of the boost libraries program_options and iostreams. Therefor I install those libraries:
sudo aptitude install libboost-iostreams-dev libboost-program_options-dev
Now ./configure is fine and the progam compiles. However the linking fails:
/usr/bin/ld: cannot find -lboost_program_options-mt
/usr/bin/ld: cannot find -lboost_iostreams-mt
This is a well documented issue and can be fixed either by fixing the autotools stuff or by linking boost_program_options to boost_program_options-mt and so forth. I choose to do the latter since this is not my project. However I am failing to locate the libraries installed in Ubuntu:
locate *boost*
returns a list of documentation and package information and some boost libraries I am not looking for. locate *program_options* is empty. The library is not under /usr/lib or /lib ... Any ideas?
For me they are under /usr/lib64 in ubuntu 13.04. But I would use boost m4
to let autotool take care of these dependencies automatically. So by including boost m4 in your configure.in, you can specify which boost modules and versions you require. Morever it would also find the required paths for you.
sometimes its impossible, especially for smaller apps and custom projects,
for future, boost includes are in /usr/include/boost ,
of course it depends on system type and distribution

Build Boost on Mac with Xcode

I've recently got acquainted with Boost library and I'd like to use it in my Xcode project. But sadly there is no HowTo or FAQ on how to do it :(
What's the sequence of actions to build and use Boost libraries in Xcode?
The easiest way I've found to do it is to install MacPorts, then you can install/build Boost via a single command:
sudo port install boost
Plus you get similar access to other open source software. The only downside I've found is that, like any other package management system, they are not always up to date with the latest version.
If you prefer Homebrew as your package manager, the command is:
brew install boost
I don't know how to use Boost from XCode (I'm not a Mac programmer), but building boost is usually done through their own build tool, bjam.
They have a guide to building boost here, and you can download the latest version of bjam here
Once it is built, you reference it from Xcode the same way you would any other library. The boost/include should be added to your include path, and the libraries in boost/lib can be referenced for the boost libs that require it.
To build boost on a mac, follow the unix variants getting started page (http://www.boost.org/doc/libs/1_39_0/more/getting_started/unix-variants.html). You won't use Xcode directly to perform the build, but once complete you can add the boost include paths and dylib's to your Xcode project.
I found that to build Boost 1.41.1 on MacOS, you need to do the following:
Download boost 1.46.1 from here: http://sourceforge.net/projects/boost/files/boost/1.46.1/
Unpack the file
Open terminal, cd to the install directory, and do the following:
chmod u+x configure.sh
cd tools/build/v2/engine/src
chmod u+x build.sh
Then go back to the install directory, and:
./configure.sh
If that runs successfully, it will tell you to run:
./bjam
That's it.. for whatever reason, I needed to set those permissions manually before it would work.
su - root
enter root password and then run below as root
/opt/local/bin/port install boost
If you have never logged in as root or forgotten your password, here are the steps to reset root password
http://support.apple.com/kb/HT1528?viewlocale=en_US&locale=en_US
For most of the boost libraries, there's nothing to build, it's all in header files.
The remainder of the instructions are here.
Currently I'm very happy with using Pete Goodliffe's script which builds a framework from the Boost source package for both iOS and Mac. Drag and drop it into a project and it works!
There are multiple versions of the script out there. Here's one:
https://gist.github.com/faithfracture/c629ae4c7168216a9856/61be257e1c0839c85743777d0687becad9913bf7
Elaboration of Ferrucio's answer:
Install Boost using MacPorts (sudo port install boost) or Homebrew (brew install boost).
Find the path to the Boost header files (it should be in /opt/homebrew/include if you're using Homebrew).
Add the path to System Header Search Paths in the Build Settings of your Xcode target.
IMPORTANT NOTE: If you add the path to User Header Search Paths instead of System Header Search Paths, as other users suggested, then your code will fail to build, since the Boost files use angled-includes (#include <boost/filename.hpp>) to include each other. Angled-includes are only for including system library headers, and thus they only work if Boost is in the System Header Search Paths.
You can read about the difference between angled-includes and quoted-includes here.