matlab engine+ pcl build linker errors - c++

Question

code:
#include <pcl/io/pcd_io.h>
#include <pcl/filters/passthrough.h>
int
main(int argc, char** argv)
{
pcl::PointCloud<pcl::PointXYZ>::Ptr cloud(new pcl::PointCloud<pcl::PointXYZ>);
pcl::PointCloud<pcl::PointXYZ>::Ptr filteredCloud(new pcl::PointCloud<pcl::PointXYZ>);
if (pcl::io::loadPCDFile<pcl::PointXYZ>(argv[1], *cloud) != 0)
{
return -1;
}
pcl::PassThrough<pcl::PointXYZ> filter;
filter.setInputCloud(cloud);
filter.setFilterFieldName("z");
filter.setFilterLimits(0.0, 2.0);
filter.filter(*filteredCloud);
}
Cmakelists1.txt: (with support to connect to matlab engine)
Cmakelists2.txt: (no support)
when i build the code with Cmakelists2.txt, I get no errors
But when i build the code with Cmakelists1.txt, I get a huge list of undefined reference errors. Cmakelists1.txt is a superset of Cmakelists2.txt, so whatever builds with 2 should build with 1
The code is a minimalist code & i have removed the matlab part for clarity.
Can anybody help?
Cmakelists1.txt
cmake_minimum_required(VERSION 2.8 FATAL_ERROR)
project(passthrough_test)
find_package(PCL 1.2 REQUIRED)
set (PROJECT_LINK_LIBS libeng.so libmat.so libmx.so libut.so)
link_directories(${PCL_LIBRARY_DIRS} /usr/local/MATLAB/R2014a/bin/glnxa64)
include_directories(${PCL_INCLUDE_DIRS} /usr/local/MATLAB/R2014a/extern/include/)
add_definitions(${PCL_DEFINITIONS})
add_executable (passthrough_test passthrough_test.cpp)
target_link_libraries (passthrough_test ${PCL_LIBRARIES} ${PROJECT_LINK_LIBS})
Cmakelists2.txt:
cmake_minimum_required(VERSION 2.8 FATAL_ERROR)
project(passthrough_test)
find_package(PCL 1.2 REQUIRED)
link_directories(${PCL_LIBRARY_DIRS})
include_directories(${PCL_INCLUDE_DIRS})
add_definitions(${PCL_DEFINITIONS})
add_executable (passthrough_test passthrough_test.cpp)
target_link_libraries (passthrough_test ${PCL_LIBRARIES})
List of errors:
Linking CXX executable passthrough_test
/usr/bin/cmake -E cmake_link_script CMakeFiles/passthrough_test.dir/link.txt --verbose=1
/usr/bin/c++ -Wno-deprecated -g CMakeFiles/passthrough_test.dir/passthrough_test.cpp.o -o passthrough_test -L/usr/local/lib -L/usr/local/MATLAB/R2014a/bin/glnxa64 -rdynamic -lboost_system -lboost_filesystem -lboost_thread -lboost_date_time -lboost_iostreams -lboost_serialization -lboost_chrono -lpthread /usr/local/lib/libpcl_common.so -Wl,-Bstatic -lflann_cpp_s -Wl,-Bdynamic /usr/local/lib/libpcl_kdtree.so /usr/local/lib/libpcl_octree.so /usr/local/lib/libpcl_search.so /usr/local/lib/libpcl_sample_consensus.so /usr/local/lib/libpcl_filters.so -lOpenNI -lOpenNI2 /usr/lib/libvtkCommon.so.5.8.0 /usr/lib/libvtkFiltering.so.5.8.0 /usr/lib/libvtkImaging.so.5.8.0 /usr/lib/libvtkGraphics.so.5.8.0 /usr/lib/libvtkGenericFiltering.so.5.8.0 /usr/lib/libvtkIO.so.5.8.0 /usr/lib/libvtkRendering.so.5.8.0 /usr/lib/libvtkVolumeRendering.so.5.8.0 /usr/lib/libvtkHybrid.so.5.8.0 /usr/lib/libvtkWidgets.so.5.8.0 /usr/lib/libvtkParallel.so.5.8.0 /usr/lib/libvtkInfovis.so.5.8.0 /usr/lib/libvtkGeovis.so.5.8.0 /usr/lib/libvtkViews.so.5.8.0 /usr/lib/libvtkCharts.so.5.8.0 /usr/local/lib/libpcl_io.so /usr/local/lib/libpcl_features.so /usr/local/lib/libpcl_ml.so /usr/local/lib/libpcl_segmentation.so /usr/local/lib/libpcl_visualization.so /usr/local/lib/libpcl_outofcore.so /usr/local/lib/libpcl_cuda_features.so /usr/local/lib/libpcl_cuda_segmentation.so /usr/local/lib/libpcl_cuda_io.so /usr/local/lib/libpcl_cuda_sample_consensus.so -lqhull /usr/local/lib/libpcl_surface.so /usr/local/lib/libpcl_registration.so /usr/local/lib/libpcl_recognition.so /usr/local/lib/libpcl_keypoints.so /usr/local/lib/libpcl_gpu_containers.so /usr/local/lib/libpcl_gpu_utils.so /usr/local/lib/libpcl_gpu_octree.so /usr/local/lib/libpcl_gpu_features.so /usr/local/lib/libpcl_gpu_segmentation.so /usr/local/lib/libpcl_gpu_surface.so /usr/local/lib/libpcl_gpu_kinfu.so /usr/local/lib/libpcl_gpu_kinfu_large_scale.so /usr/local/lib/libpcl_tracking.so /usr/local/lib/libpcl_stereo.so /usr/local/lib/libpcl_people.so /usr/local/lib/libpcl_apps.so /usr/local/lib/libpcl_3d_rec_framework.so -lboost_system -lboost_filesystem -lboost_thread -lboost_date_time -lboost_iostreams -lboost_serialization -lboost_chrono -lpthread -lqhull -lOpenNI -lOpenNI2 -Wl,-Bstatic -lflann_cpp_s -Wl,-Bdynamic /usr/lib/libvtkCommon.so.5.8.0 /usr/lib/libvtkFiltering.so.5.8.0 /usr/lib/libvtkImaging.so.5.8.0 /usr/lib/libvtkGraphics.so.5.8.0 /usr/lib/libvtkGenericFiltering.so.5.8.0 /usr/lib/libvtkIO.so.5.8.0 /usr/lib/libvtkRendering.so.5.8.0 /usr/lib/libvtkVolumeRendering.so.5.8.0 /usr/lib/libvtkHybrid.so.5.8.0 /usr/lib/libvtkWidgets.so.5.8.0 /usr/lib/libvtkParallel.so.5.8.0 /usr/lib/libvtkInfovis.so.5.8.0 /usr/lib/libvtkGeovis.so.5.8.0 /usr/lib/libvtkViews.so.5.8.0 /usr/lib/libvtkCharts.so.5.8.0 -leng -lmat -lmx -lut /usr/local/lib/libpcl_common.so /usr/local/lib/libpcl_kdtree.so /usr/local/lib/libpcl_octree.so /usr/local/lib/libpcl_search.so /usr/local/lib/libpcl_sample_consensus.so /usr/local/lib/libpcl_filters.so /usr/local/lib/libpcl_io.so /usr/local/lib/libpcl_features.so /usr/local/lib/libpcl_ml.so /usr/local/lib/libpcl_segmentation.so /usr/local/lib/libpcl_visualization.so /usr/local/lib/libpcl_outofcore.so /usr/local/lib/libpcl_cuda_features.so /usr/local/lib/libpcl_cuda_segmentation.so /usr/local/lib/libpcl_cuda_io.so /usr/local/lib/libpcl_cuda_sample_consensus.so /usr/local/lib/libpcl_surface.so /usr/local/lib/libpcl_registration.so /usr/local/lib/libpcl_recognition.so /usr/local/lib/libpcl_keypoints.so /usr/local/lib/libpcl_gpu_containers.so /usr/local/lib/libpcl_gpu_utils.so /usr/local/lib/libpcl_gpu_octree.so /usr/local/lib/libpcl_gpu_features.so /usr/local/lib/libpcl_gpu_segmentation.so /usr/local/lib/libpcl_gpu_surface.so /usr/local/lib/libpcl_gpu_kinfu.so /usr/local/lib/libpcl_gpu_kinfu_large_scale.so /usr/local/lib/libpcl_tracking.so /usr/local/lib/libpcl_stereo.so /usr/local/lib/libpcl_people.so /usr/local/lib/libpcl_apps.so /usr/local/lib/libpcl_3d_rec_framework.so -leng -lmat -lmx -lut /usr/lib/libvtkViews.so.5.8.0 /usr/lib/libvtkInfovis.so.5.8.0 /usr/lib/libvtkWidgets.so.5.8.0 /usr/lib/libvtkVolumeRendering.so.5.8.0 /usr/lib/libvtkHybrid.so.5.8.0 /usr/lib/libvtkParallel.so.5.8.0 /usr/lib/libvtkRendering.so.5.8.0 /usr/lib/libvtkImaging.so.5.8.0 /usr/lib/libvtkGraphics.so.5.8.0 /usr/lib/libvtkIO.so.5.8.0 /usr/lib/libvtkFiltering.so.5.8.0 /usr/lib/libvtkCommon.so.5.8.0 -lm /usr/lib/libvtksys.so.5.8.0 -ldl -Wl,-rpath,/usr/local/lib:/usr/local/MATLAB/R2014a/bin/glnxa64
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFReadDirectory#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_CTX_use_certificate_chain_file#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFIsTiled#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_get_error#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_use_PrivateKey_file#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_set_ex_data#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFScanlineSize#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `X509_STORE_set_flags#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `X509_get_subject_name#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `ENGINE_load_private_key#OPENSSL_1.0.0'
make[2]: Leaving directory `/home/shome/temp_codes/passthrough_test/build'
//usr/lib/libpq.so.5: undefined reference to `CRYPTO_set_id_callback#OPENSSL_1.0.0'
make[1]: Leaving directory `/home/shome/temp_codes/passthrough_test/build'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFClose#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_CTX_get_cert_store#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFGetFieldDefaulted#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_check_private_key#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `ENGINE_by_id#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `CRYPTO_set_locking_callback#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `X509_NAME_get_text_by_NID#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_write#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `X509_free#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_free#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_ctrl#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_set_verify#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_set_fd#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_use_PrivateKey#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFSetWarningHandler#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `ENGINE_finish#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `_TIFFmalloc#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_get_peer_certificate#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `CRYPTO_num_locks#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_use_certificate_file#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `ENGINE_free#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `OPENSSL_config#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `X509_STORE_load_locations#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFDefaultStripSize#LIBTIFF_4.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFReadTile#LIBTIFF_4.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFWriteScanline#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_read#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `_TIFFfree#LIBTIFF_4.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFGetField#LIBTIFF_4.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFClientOpen#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_CTX_new#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFNumberOfDirectories#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `ERR_get_error#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `TLSv1_method#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_new#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_load_error_strings#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFOpen#LIBTIFF_4.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFReadRGBAImage#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_CTX_load_verify_locations#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFSetField#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `ENGINE_init#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `ERR_reason_error_string#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_connect#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_CTX_ctrl#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_pending#OPENSSL_1.0.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_library_init#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFSetErrorHandler#LIBTIFF_4.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFSetDirectory#LIBTIFF_4.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFReadScanline#LIBTIFF_4.0'
//usr/lib/libpq.so.5: undefined reference to `SSL_shutdown#OPENSSL_1.0.0'
/usr/lib/libvtkIO.so.5.8.0: undefined reference to `TIFFNumberOfTiles#LIBTIFF_4.0'
collect2: error: ld returned 1 exit status
make[2]: *** [passthrough_test] Error 1
make[1]: *** [CMakeFiles/passthrough_test.dir/all] Error 2
make: *** [all] Error 2