I am trying to manually compile a c++ project that uses pybind11. I am able to make it work but I don't understand one compilation problem.
Here is a minimal example: I have a folder containing the makefile and folders lib/, bin/ and src/. src/ contains the following files implementing a function that is just returns 1.
src/hi.hpp
#ifndef hi_hpp
#define hi_hpp
#include <stdio.h>
int get1();
#endif
src/hi.cpp
#include "hi.hpp"
int get1() {
return 1;
}
src/bind_hi.cpp
#include "hi.hpp"
#include <pybind11/pybind11.h>
#include <pybind11/stl.h>
#include <pybind11/stl_bind.h>
namespace py = pybind11;
PYBIND11_MODULE( hi, m ) {
m.doc() = "doc"; // optional module docstring
m.def("get1", &get1, "get 1");
}
makefile (working)
CXX:=clang++
CXXFLAGS:=-Ofast -Wall -shared -std=c++11 -undefined dynamic_lookup -fPIC -I/Users/user/opt/anaconda3/include/python3.8 -I/Users/user/opt/anaconda3/lib/python3.8/site-packages/pybind11/include -I/src
EXT:=$(shell python3-config --extension-suffix)
DEPS:= src/hi.cpp src/bind_hi.cpp
hi.$(EXT): $(DEPS)
$(CXX) $(CXXFLAGS) $(DEPS) -o lib/hi$(EXT) -v
clean:
#rm lib/*$(EXT)
.PHONY=clean
Here is the output I get during compilation:
clang++ -Ofast -Wall -shared -std=c++11 -undefined dynamic_lookup -fPIC -I/Users/user/opt/anaconda3/include/python3.8 -I/Users/user/opt/anaconda3/lib/python3.8/site-packages/pybind11/include -I/src src/hi.cpp src/bind_hi.cpp -o lib/hi.cpython-38-darwin.so -v
clang version 10.0.0
Target: x86_64-apple-darwin20.3.0
Thread model: posix
InstalledDir: /Users/user/opt/anaconda3/bin
"/Users/user/opt/anaconda3/bin/clang-10" -cc1 -triple x86_64-apple-macosx10.16.0 -Wdeprecated-objc-isa-usage -Werror=deprecated-objc-isa-usage -emit-obj -disable-free -disable-llvm-verifier -discard-value-names -main-file-name hi.cpp -mrelocation-model pic -pic-level 2 -mthread-model posix -mframe-pointer=all -menable-no-infs -menable-no-nans -menable-unsafe-fp-math -fno-signed-zeros -mreassociate -freciprocal-math -ffp-contract=fast -fno-rounding-math -ffast-math -ffinite-math-only -masm-verbose -munwind-tables -target-cpu penryn -dwarf-column-info -debugger-tuning=lldb -target-linker-version 241.9 -v -resource-dir /Users/user/opt/anaconda3/lib/clang/10.0.0 -I /Users/user/opt/anaconda3/include/python3.8 -I /Users/user/opt/anaconda3/lib/python3.8/site-packages/pybind11/include -I /src -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -stdlib=libc++ -internal-isystem /Users/user/opt/anaconda3/bin/../include/c++/v1 -internal-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1 -internal-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/local/include -internal-isystem /Users/user/opt/anaconda3/lib/clang/10.0.0/include -internal-externc-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -Ofast -Wall -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/user/Documents/python_package_example -ferror-limit 19 -fmessage-length 158 -stack-protector 1 -fblocks -fencode-extended-block-signature -fregister-global-dtors-with-atexit -fgnuc-version=4.2.1 -fobjc-runtime=macosx-10.16.0 -fcxx-exceptions -fexceptions -fmax-type-align=16 -fdiagnostics-show-option -fcolor-diagnostics -vectorize-loops -vectorize-slp -o /var/folders/xy/lcpszqt54bg9_4xnrhdk9j500000gp/T/hi-ffd9cb.o -x c++ src/hi.cpp
clang -cc1 version 10.0.0 based upon LLVM 10.0.0 default target x86_64-apple-darwin20.3.0
ignoring nonexistent directory "/Users/user/opt/anaconda3/lib/python3.8/site-packages/pybind11/include"
ignoring nonexistent directory "/src"
ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1"
ignoring nonexistent directory
"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/local/include"
ignoring nonexistent directory
"/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/Library/Frameworks"
#include "..." search starts here:
#include <...> search starts here:
/Users/user/opt/anaconda3/include/python3.8
/Users/user/opt/anaconda3/bin/../include/c++/v1
/Users/user/opt/anaconda3/lib/clang/10.0.0/include
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/System/Library/Frameworks (framework directory)
End of search list.
"/Users/user/opt/anaconda3/bin/clang-10" -cc1 -triple x86_64-apple-macosx10.16.0 -Wdeprecated-objc-isa-usage -Werror=deprecated-objc-isa-usage -emit-obj -disable-free -disable-llvm-verifier -discard-value-names -main-file-name bind_hi.cpp -mrelocation-model pic -pic-level 2 -mthread-model posix -mframe-pointer=all -menable-no-infs -menable-no-nans -menable-unsafe-fp-math -fno-signed-zeros -mreassociate -freciprocal-math -ffp-contract=fast -fno-rounding-math -ffast-math -ffinite-math-only -masm-verbose -munwind-tables -target-cpu penryn -dwarf-column-info -debugger-tuning=lldb -target-linker-version 241.9 -v -resource-dir /Users/user/opt/anaconda3/lib/clang/10.0.0 -I /Users/user/opt/anaconda3/include/python3.8 -I /Users/user/opt/anaconda3/lib/python3.8/site-packages/pybind11/include -I /src -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk -stdlib=libc++ -internal-isystem /Users/user/opt/anaconda3/bin/../include/c++/v1 -internal-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1 -internal-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/local/include -internal-isystem /Users/user/opt/anaconda3/lib/clang/10.0.0/include -internal-externc-isystem /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -Ofast -Wall -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/user/Documents/python_package_example -ferror-limit 19 -fmessage-length 158 -stack-protector 1 -fblocks -fencode-extended-block-signature -fregister-global-dtors-with-atexit -fgnuc-version=4.2.1 -fobjc-runtime=macosx-10.16.0 -fcxx-exceptions -fexceptions -fmax-type-align=16 -fdiagnostics-show-option -fcolor-diagnostics -vectorize-loops -vectorize-slp -o /var/folders/xy/lcpszqt54bg9_4xnrhdk9j500000gp/T/bind_hi-4642ed.o -x c++ src/bind_hi.cpp
clang -cc1 version 10.0.0 based upon LLVM 10.0.0 default target x86_64-apple-darwin20.3.0
ignoring nonexistent directory "/Users/user/opt/anaconda3/lib/python3.8/site-packages/pybind11/include"
ignoring nonexistent directory "/src"
ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1"
ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/local/include"
ignoring nonexistent directory "/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/Library/Frameworks"
#include "..." search starts here:
#include <...> search starts here:
/Users/user/opt/anaconda3/include/python3.8
/Users/user/opt/anaconda3/bin/../include/c++/v1
/Users/user/opt/anaconda3/lib/clang/10.0.0/include
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/System/Library/Frameworks (framework directory)
End of search list.
src/bind_hi.cpp:9:10: fatal error: 'pybind11/pybind11.h' file not found
#include <pybind11/pybind11.h>
^~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [hi..cpython-38-darwin.so] Error 1
This output deviates from that during successful compilation at the line:
ignoring nonexistent directory "/Users/user/opt/anaconda3/lib/python3.8/site-packages/pybind11/include"
I am working on an Android Studio project by using NDK and cmake.
When I build it up, I got an error called "internal error in value_from_output_section".
[207/208] Linking CXX shared library ..\..\..\..\build\intermediates\cmake\debug\obj\armeabi-v7a\libToyDisplay.so
FAILED: ../../../../build/intermediates/cmake/debug/obj/armeabi-v7a/libToyDisplay.so
cmd.exe /C "cd . && C:\Users\Administrator\AppData\Local\Android\Sdk\ndk\18.1.5063045\toolchains\llvm\prebuilt\windows-x86_64\bin\clang++.exe --target=armv7-none-linux-androideabi16 --gcc-toolchain=C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/toolchains/arm-linux-androideabi-4.9/prebuilt/windows-x86_64 --sysroot=C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sysroot -fPIC -isystem C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sysroot/usr/include/arm-linux-androideabi -g -DANDROID -ffunction-sections -funwind-tables -fstack-protector-strong -no-canonical-prefixes -march=armv7-a -mfloat-abi=softfp -mfpu=vfpv3-d16 -mthumb -Wa,--noexecstack -Wformat -Werror=format-security -std=c++11 -frtti -fexceptions -Oz -DNDEBUG -Wl,--exclude-libs,libgcc.a -Wl,--exclude-libs,libatomic.a -nostdlib++ --sysroot C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/platforms/android-16/arch-arm -Wl,--build-id -Wl,--warn-shared-textrel -Wl,--fatal-warnings -Wl,--fix-cortex-a8 -Wl,--exclude-libs,libunwind.a -LC:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sources/cxx-stl/llvm-libc++/libs/armeabi-v7a -Wl,--no-undefined -Wl,-z,noexecstack -Qunused-arguments -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libToyDisplay.so -o ..\..\..\..\build\intermediates\cmake\debug\obj\armeabi-v7a\libToyDisplay.so CMakeFiles/ToyDisplay.dir/Source/Toy/Base.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/ConfigFile.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/d3dLoadEntity.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/d3dSceneAct.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/d3dScense.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/d3dSeceneWeb.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/GlobalInterface.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/GUI_API/gui_globe.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/GUI_API/gui_Ime.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/GUI_API/gui_List.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/GUI_API/gui_Text.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/OgreFramework.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/OgreFrameworkObjects.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/RectLayoutManager.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/GlobalDataAndroid/ToyGlobalInterface.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyMove.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyMoveFSM.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyMoveState.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyMoveStateJump.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyMoveStateSlip.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyMoveStateSwim.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyMoveStateWalk.cpp.o CMakeFiles/ToyDisplay.dir/Source/Toy/Display/ToyUI.cpp.o -Wl,--start-group -landroid ../../../../src/main/Run-Sup/ogre_android1.12.8/build/lib/libcpufeatures.a ../../../../src/main/Run-Sup/ogre_android1.12.8/build/lib/libzziplib.a ../../../../build/intermediates/cmake/debug/obj/armeabi-v7a/libToyD3D.so ../../../../src/main/Run-Sup/ogre_android1.12.8/build/lib/libOgreMainStatic.a ../../../../src/main/Run-Sup/ogre_android1.12.8/build/lib/libOgreOverlayStatic.a ../../../../src/main/Run-Sup/ogre_android1.12.8/build/lib/libfreetype.a -Wl,--end-group ../../../../build/intermediates/cmake/debug/obj/armeabi-v7a/libToyMath.so -lm ../../../../build/intermediates/cmake/debug/obj/armeabi-v7a/libMiniZip.so -llog -lz -latomic -lm "C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sources/cxx-stl/llvm-libc++/libs/armeabi-v7a/libc++_static.a" "C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sources/cxx-stl/llvm-libc++/libs/armeabi-v7a/libc++abi.a" "C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sources/cxx-stl/llvm-libc++/libs/armeabi-v7a/libandroid_support.a" "C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sources/cxx-stl/llvm-libc++/libs/armeabi-v7a/libunwind.a" "-ldl" && cd ."
C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/toolchains/arm-linux-androideabi-4.9/prebuilt/windows-x86_64/lib/gcc/arm-linux-androideabi/4.9.x/../../../../arm-linux-androideabi/bin\ld: internal error in value_from_output_section, at /buildbot/src/android/binutils/toolchain/binutils/binutils-2.27/gold/reloc.cc:1495
clang++.exe: error: linker command failed with exit code 1 (use -v to see invocation)
ninja: build stopped: subcommand failed.
I have try to change NDK version from 16 to 18, but both of them got same error in ToolBar "Build Output". But there is another error shows in Event Log. Maybe these two errors have some connections.
I'm not sure.
11:02 C/C++ Configuration Problem
MiniZip | debug | armeabi-v7a
Compiler exited with error code 1: C:\Users\Administrator\AppData\Local\Android\Sdk\ndk\18.1.5063045\toolchains\llvm\prebuilt\windows-x86_64\bin\clang.exe -xc -isystem C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sysroot/usr/include/arm-linux-androideabi -g -DANDROID -ffunction-sections -funwind-tables -fstack-protector-strong -no-canonical-prefixes -march=armv7-a -mfloat-abi=softfp -mfpu=vfpv3-d16 -mthumb -Wa,--noexecstack -Wformat -Oz -DNDEBUG -fpch-preprocess -v -dD -E
Android (4751641 based on r328903) clang version 7.0.2 (https://android.googlesource.com/toolchain/clang 003100370607242ddd5815e4a043907ea9004281) (https://android.googlesource.com/toolchain/llvm 1d739ffb0366421d383e04ff80ec2ee591315116) (based on LLVM 7.0.2svn)
Target: x86_64-w64-windows-gnu
Thread model: posix
InstalledDir: C:\Users\Administrator\AppData\Local\Android\Sdk\ndk\18.1.5063045\toolchains\llvm\prebuilt\windows-x86_64\bin
clang.exe: warning: argument unused during compilation: '-mfloat-abi=softfp' [-Wunused-command-line-argument] clang.exe:
warning: argument unused during compilation: '-mfpu=vfpv3-d16' [-Wunused-command-line-argument] clang.exe:
warning: argument unused during compilation: '-mthumb' [-Wunused-command-line-argument] clang.exe:
warning: argument unused during compilation: '-Wa,--noexecstack' [-Wunused-command-line-argument] "C:\\Users\\Administrator\\AppData\\Local\\Android\\Sdk\\ndk\\18.1.5063045\\toolchains\\llvm\\prebuilt\\windows-x86_64\\bin\\clang.exe"
-cc1 -triple x86_64-w64-windows-gnu -E -disable-free -disable-llvm-verifier -discard-value-names -main-file-name
compiler-file1449694187694939204 -mrelocation-model pic -pic-level 2 -mthread-model posix -fmath-errno -masm-verbose
-mconstructor-aliases -munwind-tables -target-cpu armv7-a -dwarf-column-info -debug-info-kind=limited -dwarf-version=4
-debugger-tuning=gdb -momit-leaf-frame-pointer -v -ffunction-sections
-resource-dir "C:\\Users\\Administrator\\AppData\\Local\\Android\\Sdk\\ndk\\18.1.5063045\\toolchains\\llvm\\prebuilt\\windows-x86_64\\lib64\\clang\\7.0.2"
-isystem C:/Users/Administrator/AppData/Local/Android/Sdk/ndk/18.1.5063045/sysroot/usr/include/arm-linux-androideabi -D ANDROID -D NDEBUG -D ___CIDR_DEFINITIONS_END
-internal-isystem "C:\\Users\\Administrator\\AppData\\Local\\Android\\Sdk\\ndk\\18.1.5063045\\toolchains\\llvm\\prebuilt\\windows-x86_64\\lib64\\clang\\7.0.2\\include"
-internal-isystem "C:\\Users\\Administrator\\AppData\\Local\\Android\\Sdk\\ndk\\18.1.5063045\\toolchains\\llvm\\prebuilt\\windows-x86_64\\x86_64-w64-mingw32/sys-root/mingw/include"
-internal-isystem "C:\\Users\\Administrator\\AppData\\Local\\Android\\Sdk\\ndk\\18.1.5063045\\toolchains\\llvm\\prebuilt\\windows-x86_64\\x86_64-w64-mingw32\\include"
-internal-isystem "C:\\Users\\Administrator\\AppData\\Local\\Android\\Sdk\\ndk\\18.1.5063045\\toolchains\\llvm\\prebuilt\\windows-x86_64\\include" -Oz -Wformat -fdebug-compilation-dir "D:\\ogre\\Android_Studio_Proj\\IQI-ogre1.12.8\\app\\.externalNativeBuild\\cmake\\debug\\armeabi-v7a"
-ferror-limit 19 -fmessage-length 0 -stack-protector 2 -fno-use-cxa-atexit -fobjc-runtime=gcc -fseh-exceptions -fdiagnostics-show-option -vectorize-slp -dD -o - -x c
"C:\\Users\\Administrator\\AppData\\Local\\Temp\\compiler-file1449694187694939204"
error: unknown target CPU 'armv7-a' note: valid target CPU values are: nocona, core2, penryn, bonnell, atom, silvermont, slm, goldmont, nehalem, corei7, westmere, sandybridge, corei7-avx, ivybridge, core-avx-i, haswell, core-avx2, broadwell, skylake, skylake-avx512, skx, cannonlake, icelake, knl, knm, k8, athlon64, athlon-fx, opteron, k8-sse3, athlon64-sse3, opteron-sse3, amdfam10, barcelona, btver1, btver2, bdver1, bdver2, bdver3, bdver4, znver1, x86-64
Is anyone get some iders? Any help is appreciated!
I am trying to fuzz a simple C++ code using afl plus plus clang compiler (llvm_mode). I'm able to fuzz the code and generate the ARM object file but it fails while linking. I guess i'm missing some linker options. Any help would be appreciated
Following is my command:
afl-clang-fast++ --target=arm-linux-gnueabihf --rtlib=compiler-rt --stdlib=libc++ -nostdinc++ -I${root}/include/c++/v1 -Wl,-L${root}/lib --sysroot ${sysroot} --gcc-toolchain=/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf -rpath ${root}/lib TestCodeX86toARM.cpp -o Test -v
root and sysroot values are as follows
root=/path/to/clang/install_dir
sysroot=/path/to/linarogcc/arm-linux-gnueabihf/libc
From the output, i can conclude that with the help of Linaro tool-chain, compilation is going through but linking is failing
Output:
afl-clang-fast++2.66d by <lszekeres#google.com> in CLASSIC mode
clang version 6.0.0-1ubuntu2 (tags/RELEASE_600/final)
Target: arm--linux-gnueabihf
Thread model: posix
InstalledDir: /usr/lib/llvm-6.0/bin
Found candidate GCC installation: /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0
Selected GCC installation: /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0
Candidate multilib: .;#m32
Selected multilib: .;#m32
"/usr/lib/llvm-6.0/bin/clang" -cc1 -triple armv6kz--linux-gnueabihf -emit-obj -disable-free -disable-llvm-verifier -discard-value-names -main-file-name TestCodeX86toARM.cpp -mrelocation-model static -mthread-model posix -mdisable-fp-elim -fmath-errno -masm-verbose -mconstructor-aliases -fuse-init-array -target-cpu arm1176jzf-s -target-feature +strict-align -target-abi aapcs-linux -mfloat-abi hard -fallow-half-arguments-and-returns -dwarf-column-info -debug-info-kind=limited -dwarf-version=4 -debugger-tuning=gdb -v -nostdinc++ -resource-dir /usr/lib/llvm-6.0/lib/clang/6.0.0 -I /home/user/Tejas/clang+llvm-10.0.0-x86_64-linux-gnu-ubuntu-18.04/include/c++/v1 -D __AFL_HAVE_MANUAL_CONTROL=1 -D __AFL_COMPILER=1 -D FUZZING_BUILD_MODE_UNSAFE_FOR_PRODUCTION=1 -D __AFL_FUZZ_INIT()=int __afl_sharedmem_fuzzing = 1;extern unsigned int *__afl_fuzz_len;extern unsigned char *__afl_fuzz_ptr;unsigned char __afl_fuzz_alt[1024000];unsigned char *__afl_fuzz_alt_ptr = __afl_fuzz_alt; -D __AFL_FUZZ_TESTCASE_BUF=(__afl_fuzz_ptr ? __afl_fuzz_ptr : __afl_fuzz_alt_ptr) -D __AFL_FUZZ_TESTCASE_LEN=(__afl_fuzz_ptr ? *__afl_fuzz_len : (*__afl_fuzz_len = read(0, __afl_fuzz_alt_ptr, 1024000)) == 0xffffffff ? 0 : *__afl_fuzz_len) -D "__AFL_LOOP(_A)=({ static volatile char *_B __attribute__((used)); _B = (char*)\"##SIG_AFL_PERSISTENT##\"; __attribute__((visibility(\"default\"))) int _L(unsigned int) __asm__(\"__afl_persistent_loop\"); _L(_A); })" -D "__AFL_INIT()=do { static volatile char *_A __attribute__((used)); _A = (char*)\"##SIG_AFL_DEFER_FORKSRV##\"; __attribute__((visibility(\"default\"))) void _I(void) __asm__(\"__afl_manual_init\"); _I(); } while (0)" -isysroot /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc -internal-isystem /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/local/include -internal-isystem /usr/lib/llvm-6.0/lib/clang/6.0.0/include -internal-externc-isystem /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/include -internal-externc-isystem /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/include -O3 -Wno-unused-command-line-argument -fdeprecated-macro -fdebug-compilation-dir /home/user/Tejas/CrossCopileTestCode -ferror-limit 19 -fmessage-length 87 -funroll-loops -fno-signed-char -fobjc-runtime=gcc -fcxx-exceptions -fexceptions -fdiagnostics-show-option -fcolor-diagnostics -vectorize-loops -vectorize-slp -load /usr/local/lib/afl/afl-llvm-pass.so -o /tmp/TestCodeX86toARM-c0d8ac.o -x c++ TestCodeX86toARM.cpp
clang -cc1 version 6.0.0 based upon LLVM 6.0.0 default target x86_64-pc-linux-gnu
ignoring nonexistent directory "/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/local/include"
ignoring nonexistent directory "/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/include"
#include "..." search starts here:
#include <...> search starts here:
/home/user/Tejas/clang+llvm-10.0.0-x86_64-linux-gnu-ubuntu-18.04/include/c++/v1
/usr/lib/llvm-6.0/lib/clang/6.0.0/include
/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/include
End of search list.
afl-llvm-pass++2.66d by <lszekeres#google.com> and <adrian.herrera#anu.edu.au>
[+] Instrumented 3 locations (non-hardened mode, ratio 100%).
"/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0/../../../../arm-linux-gnueabihf/bin/ld" --sysroot=/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc -z relro -X --hash-style=gnu --eh-frame-hdr -m armelf_linux_eabi -dynamic-linker /lib/ld-linux-armhf.so.3 -o Test /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/lib/../lib/crt1.o /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/lib/../lib/crti.o /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0/crtbegin.o -L/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0 -L/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0/../../../../arm-linux-gnueabihf/lib/../lib -L/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/lib/../lib -L/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/lib/../lib -L/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0/../../../../arm-linux-gnueabihf/lib -L/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/lib -L/home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/lib -L/home/user/Tejas/clang+llvm-10.0.0-x86_64-linux-gnu-ubuntu-18.04/lib -rpath /home/user/Tejas/clang+llvm-10.0.0-x86_64-linux-gnu-ubuntu-18.04/lib /tmp/TestCodeX86toARM-c0d8ac.o /usr/local/lib/afl/afl-llvm-rt.o -lc++ -lm /usr/lib/llvm-6.0/lib/clang/6.0.0/lib/linux/libclang_rt.builtins-armhf.a -lc /usr/lib/llvm-6.0/lib/clang/6.0.0/lib/linux/libclang_rt.builtins-armhf.a /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/lib/gcc/arm-linux-gnueabihf/7.5.0/crtend.o /home/user/Tejas/LLVM/gcc-linaro-7.5.0-2019.12-x86_64_arm-linux-gnueabihf/arm-linux-gnueabihf/libc/usr/lib/../lib/crtn.o
/usr/local/lib/afl/afl-llvm-rt.o: file not recognized: File format not recognized
clang: error: linker command failed with exit code 1 (use -v to see invocation)
I have an issue with a Yocto-generated SDK: the header file xmmintrin.h is not found when trying to compile with the SDK. Example:
$ echo '#include <xmmintrin.h>' > t.cpp
$ $CXX $CXXFLAGS -no-canonical-prefixes -c t.cpp
t.cpp:1:10: fatal error: 'xmmintrin.h' file not found
$CXX points to the SDK's clang++.
The verbose output is:
$ $CXX $CXXFLAGS -no-canonical-prefixes -c t.cpp -v
clang version 6.0.0 (git://github.com/llvm-mirror/clang.git ff0c0d8ab3e316bb6e2741fedb3b545e198eab7a) (git://github.com/llvm-mirror/llvm.git 089d4c0c490687db6c75f1d074e99c4d42936a50)
Target: x86_64-poky-linux-musl
Thread model: posix
InstalledDir: /opt/poky-tiny/2.4.2/sysroots/x86_64-pokysdk-linux/usr/bin/x86_64-poky-linux-musl
Found candidate GCC installation: /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/lib//x86_64-poky-linux-musl/7.3.0
Found candidate GCC installation: /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/lib/gcc/x86_64-poky-linux-musl/7.3.0
Selected GCC installation: /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/lib//x86_64-poky-linux-musl/7.3.0
Candidate multilib: .;#m64
Selected multilib: .;#m64
"/opt/poky-tiny/2.4.2/sysroots/x86_64-pokysdk-linux/usr/bin/x86_64-poky-linux-musl/x86_64-poky-linux-musl-clang++" -cc1 -triple x86_64-poky-linux-musl -emit-obj -disable-free -disable-llvm-verifier -discard-value-names -main-file-name t.cpp -mrelocation-model pic -pic-level 2 -pic-is-pie -mthread-model posix -fmath-errno -mfpmath sse -masm-verbose -mconstructor-aliases -munwind-tables -fuse-init-array -target-cpu core2 -target-feature +sse3 -dwarf-column-info -debug-info-kind=limited -dwarf-version=4 -debugger-tuning=gdb -momit-leaf-frame-pointer -v -coverage-notes-file /home/kamo7631/t.gcno -rpokyurce-dir /opt/poky-tiny/2.4.2/sysroots/x86_64-pokysdk-linux/usr/bin/lib/clang/6.0.0 -isysroot /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl -internal-isystem /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/include/c++/v1 -internal-isystem /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/local/include -internal-isystem /opt/poky-tiny/2.4.2/sysroots/x86_64-pokysdk-linux/usr/bin/lib/clang/6.0.0/include -internal-externc-isystem /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/include -internal-externc-isystem /opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/include -O2 -fdeprecated-macro -fdebug-compilation-dir /home/kamo7631 -ferror-limit 19 -fmessage-length 132 -fobjc-runtime=gcc -fcxx-exceptions -fexceptions -fdiagnostics-show-option -fcolor-diagnostics -vectorize-loops -vectorize-slp -o t.o -x c++ t.cpp
clang -cc1 version 6.0.0 based upon LLVM 6.0.0 default target x86_64-unknown-linux-gnu
ignoring nonexistent directory "/opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/local/include"
ignoring nonexistent directory "/opt/poky-tiny/2.4.2/sysroots/x86_64-pokysdk-linux/usr/bin/lib/clang/6.0.0/include"
ignoring nonexistent directory "/opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/include"
#include "..." search starts here:
#include <...> search starts here:
/opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/include/c++/v1
/opt/poky-tiny/2.4.2/sysroots/core2-64-poky-linux-musl/usr/include
End of search list.
t.cpp:1:10: fatal error: 'xmmintrin.h' file not found
#include <xmmintrin.h>
^~~~~~~~~~~~~
1 error generated.
The header file is present as sysroots/x86_64-pokysdk-linux/usr/lib/clang/6.0.0/include/xmmintrin.h, but is not found anywhere in sysroots/core2-64-poky-linux-musl (the target sysroot).
What do I have to change in order to be able to use this and other header files from the SDK?
Please post output of
$CLANGCXX $CXXFLAGS -no-canonical-prefixes -c t.cpp -v
I think the problem is a bug in SDK where compiler include paths are looking for
compiler headers but in wrong directory. Maybe its pointing to sysroots/x86_64-pokysdk-linux/usr/bin/lib/clang/6.0.0/include
you can try to add -I ${OECORE_NATIVE_SYSROOT}/usr/lib/clang/6.0.0/include to your compiler cmdline. also make sure you have sources the SDK environment script which is at the top of SDK install dir, its name starts like this "environment-setup-"
I cant seem to get codeblocks 13.12 to compile c++11 correctly in both clang++ and g++. I have attached the -std=c++11 and -stdlib=libc++ when compiling with clang++. This leads to a linking error. For g++ when you add -std=c++11 or -std=c++0x, the compiler cannot find the random header. When I compiled the code manually in a terminal using both clang++ and g++, none of these errors occurred.
The full linker errors are too long to post so i will just post the information given from the -v invocation.
In codeblocks using clang++ with -std=c++11 and -stdlib=libc++:
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin12.5.0
Thread model: posix
"/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o bin/Release/p_class_test obj/Release/Thread_Pool/thread_helper.o obj/Release/Thread_Pool/thread_pool.o obj/Release/Desktop/kmap_testing/hash_methods.o obj/Release/Desktop/p_class_test/p_classtest.o obj/Release/Desktop/p_class_test/refmanager.o -lstdc++ -lSystem /usr/bin/../lib/clang/5.1/lib/darwin/libclang_rt.osx.a
compiling in terminal using clang++ with -std=c++11 and -stdlib=libc++:
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin12.5.0
Thread model: posix
"/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.8.0 -emit-obj -mrelax-all -disable-free -disable-llvm-verifier -main-file-name thread_helper.cpp -mrelocation-model pic -pic-level 2 -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 236.3 -v -resource-dir /usr/bin/../lib/clang/5.1 -I /Users/zacharykraus/Desktop/p_class_test/ -I /Users/zacharykraus/Thread_Pool/ -I /Users/zacharykraus/Desktop/kmap_testing/ -stdlib=libc++ -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/zacharykraus -ferror-limit 19 -fmessage-length 80 -stack-protector 1 -mstackrealign -fblocks -fobjc-runtime=macosx-10.8.0 -fencode-extended-block-signature -fcxx-exceptions -fexceptions -fdiagnostics-show-option -fcolor-diagnostics -vectorize-slp -o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/thread_helper-57c077.o -x c++ /Users/zacharykraus/Thread_Pool/thread_helper.cpp
clang -cc1 version 5.1 based upon LLVM 3.4svn default target x86_64-apple-darwin12.5.0
ignoring nonexistent directory "/usr/include/c++/v1"
#include "..." search starts here:
#include <...> search starts here:
/Users/zacharykraus/Desktop/p_class_test
/Users/zacharykraus/Thread_Pool
/Users/zacharykraus/Desktop/kmap_testing
/usr/bin/../lib/c++/v1
/usr/local/include
/usr/bin/../lib/clang/5.1/include
/usr/include
/System/Library/Frameworks (framework directory)
/Library/Frameworks (framework directory)
End of search list.
"/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.8.0 -emit-obj -mrelax-all -disable-free -disable-llvm-verifier -main-file-name thread_pool.cpp -mrelocation-model pic -pic-level 2 -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 236.3 -v -resource-dir /usr/bin/../lib/clang/5.1 -I /Users/zacharykraus/Desktop/p_class_test/ -I /Users/zacharykraus/Thread_Pool/ -I /Users/zacharykraus/Desktop/kmap_testing/ -stdlib=libc++ -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/zacharykraus -ferror-limit 19 -fmessage-length 80 -stack-protector 1 -mstackrealign -fblocks -fobjc-runtime=macosx-10.8.0 -fencode-extended-block-signature -fcxx-exceptions -fexceptions -fdiagnostics-show-option -fcolor-diagnostics -vectorize-slp -o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/thread_pool-321d19.o -x c++ /Users/zacharykraus/Thread_Pool/thread_pool.cpp
clang -cc1 version 5.1 based upon LLVM 3.4svn default target x86_64-apple-darwin12.5.0
ignoring nonexistent directory "/usr/include/c++/v1"
#include "..." search starts here:
#include <...> search starts here:
/Users/zacharykraus/Desktop/p_class_test
/Users/zacharykraus/Thread_Pool
/Users/zacharykraus/Desktop/kmap_testing
/usr/bin/../lib/c++/v1
/usr/local/include
/usr/bin/../lib/clang/5.1/include
/usr/include
/System/Library/Frameworks (framework directory)
/Library/Frameworks (framework directory)
End of search list.
"/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.8.0 -emit-obj -mrelax-all -disable-free -disable-llvm-verifier -main-file-name hash_methods.cpp -mrelocation-model pic -pic-level 2 -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 236.3 -v -resource-dir /usr/bin/../lib/clang/5.1 -I /Users/zacharykraus/Desktop/p_class_test/ -I /Users/zacharykraus/Thread_Pool/ -I /Users/zacharykraus/Desktop/kmap_testing/ -stdlib=libc++ -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/zacharykraus -ferror-limit 19 -fmessage-length 80 -stack-protector 1 -mstackrealign -fblocks -fobjc-runtime=macosx-10.8.0 -fencode-extended-block-signature -fcxx-exceptions -fexceptions -fdiagnostics-show-option -fcolor-diagnostics -vectorize-slp -o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/hash_methods-b28b1b.o -x c++ /Users/zacharykraus/Desktop/kmap_testing/hash_methods.cpp
clang -cc1 version 5.1 based upon LLVM 3.4svn default target x86_64-apple-darwin12.5.0
ignoring nonexistent directory "/usr/include/c++/v1"
#include "..." search starts here:
#include <...> search starts here:
/Users/zacharykraus/Desktop/p_class_test
/Users/zacharykraus/Thread_Pool
/Users/zacharykraus/Desktop/kmap_testing
/usr/bin/../lib/c++/v1
/usr/local/include
/usr/bin/../lib/clang/5.1/include
/usr/include
/System/Library/Frameworks (framework directory)
/Library/Frameworks (framework directory)
End of search list.
"/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.8.0 -emit-obj -mrelax-all -disable-free -disable-llvm-verifier -main-file-name p_classtest.cpp -mrelocation-model pic -pic-level 2 -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 236.3 -v -resource-dir /usr/bin/../lib/clang/5.1 -I /Users/zacharykraus/Desktop/p_class_test/ -I /Users/zacharykraus/Thread_Pool/ -I /Users/zacharykraus/Desktop/kmap_testing/ -stdlib=libc++ -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/zacharykraus -ferror-limit 19 -fmessage-length 80 -stack-protector 1 -mstackrealign -fblocks -fobjc-runtime=macosx-10.8.0 -fencode-extended-block-signature -fcxx-exceptions -fexceptions -fdiagnostics-show-option -fcolor-diagnostics -vectorize-slp -o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/p_classtest-ad56a5.o -x c++ /Users/zacharykraus/Desktop/p_class_test/p_classtest.cpp
clang -cc1 version 5.1 based upon LLVM 3.4svn default target x86_64-apple-darwin12.5.0
ignoring nonexistent directory "/usr/include/c++/v1"
#include "..." search starts here:
#include <...> search starts here:
/Users/zacharykraus/Desktop/p_class_test
/Users/zacharykraus/Thread_Pool
/Users/zacharykraus/Desktop/kmap_testing
/usr/bin/../lib/c++/v1
/usr/local/include
/usr/bin/../lib/clang/5.1/include
/usr/include
/System/Library/Frameworks (framework directory)
/Library/Frameworks (framework directory)
End of search list.
"/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.8.0 -emit-obj -mrelax-all -disable-free -disable-llvm-verifier -main-file-name refmanager.cpp -mrelocation-model pic -pic-level 2 -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 236.3 -v -resource-dir /usr/bin/../lib/clang/5.1 -I /Users/zacharykraus/Desktop/p_class_test/ -I /Users/zacharykraus/Thread_Pool/ -I /Users/zacharykraus/Desktop/kmap_testing/ -stdlib=libc++ -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/zacharykraus -ferror-limit 19 -fmessage-length 80 -stack-protector 1 -mstackrealign -fblocks -fobjc-runtime=macosx-10.8.0 -fencode-extended-block-signature -fcxx-exceptions -fexceptions -fdiagnostics-show-option -fcolor-diagnostics -vectorize-slp -o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/refmanager-d17474.o -x c++ /Users/zacharykraus/Desktop/p_class_test/refmanager.cpp
clang -cc1 version 5.1 based upon LLVM 3.4svn default target x86_64-apple-darwin12.5.0
ignoring nonexistent directory "/usr/include/c++/v1"
#include "..." search starts here:
#include <...> search starts here:
/Users/zacharykraus/Desktop/p_class_test
/Users/zacharykraus/Thread_Pool
/Users/zacharykraus/Desktop/kmap_testing
/usr/bin/../lib/c++/v1
/usr/local/include
/usr/bin/../lib/clang/5.1/include
/usr/include
/System/Library/Frameworks (framework directory)
/Library/Frameworks (framework directory)
End of search list.
"/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o nork /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/thread_helper-57c077.o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/thread_pool-321d19.o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/hash_methods-b28b1b.o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/p_classtest-ad56a5.o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T/refmanager-d17474.o -lc++ -lSystem /usr/bin/../lib/clang/5.1/lib/darwin/libclang_rt.osx.a
Unfortunately I cant make the comparison between codeblocks g++ and g++ in the terminal.
But based on the output from the two different compilations in clang. It appears codeblocks is not using the libc++ library during the linking step. How do you get codeblocks to use the correct libraries on linking for clang++?
I assume based on the clang problem g++ in codeblocks is using an older c++ 03 library even when telling the compiler to switch to c++11. But unfortunately I dont know how to confirm this.
I found the answer to clang++.
Apparently you have to add -stdlib=libc++ as both a compiler flag and a linking flag.
The linkage output turns to
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin12.5.0
Thread model: posix
"/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o bin/Release/p_class_test obj/Release/Thread_Pool/thread_helper.o obj/Release/Thread_Pool/thread_pool.o obj/Release/Desktop/kmap_testing/hash_methods.o obj/Release/Desktop/p_class_test/p_classtest.o obj/Release/Desktop/p_class_test/refmanager.o -lc++ -lSystem /usr/bin/../lib/clang/5.1/lib/darwin/libclang_rt.osx.a
which clearly shows the correct library being used.
The g++ problem occurs because even though codeblocks outputs that is it compiling with g++ in actually it using clang++ libraries as part of the compilation and linking process. Though based on the output its not 100% clear if the g++ compiler and its includes are being called. To fix the problem, you need to add -stdlib=libc++ flag for both compilation and linking. As proof that codeblocks on apple is in fact using the clang libraries under the hood, I have attached the output from -v during both linking and compiling and the commands used by codeblocks.
Here is the information for linking:
g++ -o bin/Debug/p_class_test obj/Debug/Thread_Pool/thread_helper.o obj/Debug/Thread_Pool/thread_pool.o obj/Debug/Desktop/kmap_testing/hash_methods.o obj/Debug/Desktop/p_class_test/p_classtest.o obj/Debug/Desktop/p_class_test/refmanager.o -v -stdlib=libc++
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin12.5.0
Thread model: posix
"/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld" -demangle -dynamic -arch x86_64 -macosx_version_min 10.8.0 -o bin/Debug/p_class_test obj/Debug/Thread_Pool/thread_helper.o obj/Debug/Thread_Pool/thread_pool.o obj/Debug/Desktop/kmap_testing/hash_methods.o obj/Debug/Desktop/p_class_test/p_classtest.o obj/Debug/Desktop/p_class_test/refmanager.o -lc++ -lSystem /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/lib/darwin/libclang_rt.osx.a
And here is the information for compiling:
g++ -g -std=c++11 -stdlib=libc++ -v -I/Users/zacharykraus/Desktop/p_class_test/ -I/Users/zacharykraus/Thread_Pool -I/Users/zacharykraus/Desktop/kmap_testing -c /Users/zacharykraus/Desktop/p_class_test/refmanager.cpp -o obj/Debug/Desktop/p_class_test/refmanager.o
Apple LLVM version 5.1 (clang-503.0.40) (based on LLVM 3.4svn)
Target: x86_64-apple-darwin12.5.0
Thread model: posix
"/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang" -cc1 -triple x86_64-apple-macosx10.8.0 -emit-obj -mrelax-all -disable-free -disable-llvm-verifier -main-file-name refmanager.cpp -mrelocation-model pic -pic-level 2 -mdisable-fp-elim -masm-verbose -munwind-tables -target-cpu core2 -target-linker-version 236.3 -v -gdwarf-2 -coverage-file /Users/zacharykraus/Desktop/p_class_test/obj/Debug/Desktop/p_class_test/refmanager.o -resource-dir /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1 -I /Users/zacharykraus/Desktop/p_class_test/ -I /Users/zacharykraus/Thread_Pool -I /Users/zacharykraus/Desktop/kmap_testing -stdlib=libc++ -std=c++11 -fdeprecated-macro -fdebug-compilation-dir /Users/zacharykraus/Desktop/p_class_test -ferror-limit 19 -fmessage-length 0 -stack-protector 1 -mstackrealign -fblocks -fobjc-runtime=macosx-10.8.0 -fencode-extended-block-signature -fcxx-exceptions -fexceptions -fdiagnostics-show-option -vectorize-slp -o obj/Debug/Desktop/p_class_test/refmanager.o -x c++ /Users/zacharykraus/Desktop/p_class_test/refmanager.cpp
clang -cc1 version 5.1 based upon LLVM 3.4svn default target x86_64-apple-darwin12.5.0
ignoring nonexistent directory "/usr/include/c++/v1"
#include "..." search starts here:
#include <...> search starts here:
/Users/zacharykraus/Desktop/p_class_test
/Users/zacharykraus/Thread_Pool
/Users/zacharykraus/Desktop/kmap_testing
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1
/usr/local/include
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/5.1/include
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include
/usr/include
/System/Library/Frameworks (framework directory)
/Library/Frameworks (framework directory)
End of search list.
After a lot of annoyance I finally figured out what the problem with g++ was on codeblocks. The problem is that codeblocks when calling g++ does not use your executable path. Instead it uses your toolchain executable path in the Compiler settings. My toolchain executable path was set to /usr/bin where the apple version of g++ resides. This version actually calls clang++ through a complex series of calls. All I needed to do to fix the issue was to change the toolchain executable path to /usr/local/bin where my actual gnu compiler resides. After this change, I was able to get rid of -stdlib=libc++ and my compilation and linking readouts are below.
compilation:
g++ -g -std=c++11 -v -I/Users/zacharykraus/Desktop/p_class_test/ -I/Users/zacharykraus/Thread_Pool -I/Users/zacharykraus/Desktop/kmap_testing -c /Users/zacharykraus/Thread_Pool/thread_helper.cpp -o obj/Debug/Thread_Pool/thread_helper.o
Using built-in specs.
COLLECT_GCC=g++
Target: x86_64-apple-darwin12.5.0
Configured with: ../gcc-4.8.1/configure --enable-languages=c++,fortran
Thread model: posix
gcc version 4.8.1 (GCC)
COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-g' '-std=c++11' '-v' '-I' '/Users/zacharykraus/Desktop/p_class_test/' '-I' '/Users/zacharykraus/Thread_Pool' '-I' '/Users/zacharykraus/Desktop/kmap_testing' '-c' '-o' 'obj/Debug/Thread_Pool/thread_helper.o' '-shared-libgcc' '-mtune=core2'
/usr/local/libexec/gcc/x86_64-apple-darwin12.5.0/4.8.1/cc1plus -quiet -v -I /Users/zacharykraus/Desktop/p_class_test/ -I /Users/zacharykraus/Thread_Pool -I /Users/zacharykraus/Desktop/kmap_testing -D__DYNAMIC__ /Users/zacharykraus/Thread_Pool/thread_helper.cpp -fPIC -feliminate-unused-debug-symbols -quiet -dumpbase thread_helper.cpp -mmacosx-version-min=10.8.5 -mtune=core2 -auxbase-strip obj/Debug/Thread_Pool/thread_helper.o -g -std=c++11 -version -o /var/folders/k5/ywc_m0js3z3byh3yqwbfmfj00000gn/T//ccVidneY.s
GNU C++ (GCC) version 4.8.1 (x86_64-apple-darwin12.5.0)
compiled by GNU C version 4.8.1, GMP version 4.3.1, MPFR version 2.4.1, MPC version 0.8.1
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring nonexistent directory "/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/../../../../x86_64-apple-darwin12.5.0/include"
#include "..." search starts here:
#include <...> search starts here:
/Users/zacharykraus/Desktop/p_class_test/
/Users/zacharykraus/Thread_Pool
/Users/zacharykraus/Desktop/kmap_testing
/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/../../../../include/c++/4.8.1
/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/../../../../include/c++/4.8.1/x86_64-apple-darwin12.5.0
/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/../../../../include/c++/4.8.1/backward
/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/include
/usr/local/include
/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/include-fixed
/usr/include
/System/Library/Frameworks
/Library/Frameworks
End of search list.
linking:
g++ -o bin/Debug/p_class_test obj/Debug/Thread_Pool/thread_helper.o obj/Debug/Thread_Pool/thread_pool.o obj/Debug/Desktop/kmap_testing/hash_methods.o obj/Debug/Desktop/p_class_test/p_classtest.o obj/Debug/Desktop/p_class_test/refmanager.o -v
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-apple-darwin12.5.0/4.8.1/lto-wrapper
Target: x86_64-apple-darwin12.5.0
Configured with: ../gcc-4.8.1/configure --enable-languages=c++,fortran
Thread model: posix
gcc version 4.8.1 (GCC)
COMPILER_PATH=/usr/local/libexec/gcc/x86_64-apple-darwin12.5.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.5.0/4.8.1/:/usr/local/libexec/gcc/x86_64-apple-darwin12.5.0/:/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/
LIBRARY_PATH=/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/:/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/../../../:/usr/lib/
COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.8.5' '-o' 'bin/Debug/p_class_test' '-v' '-shared-libgcc' '-mtune=core2'
/usr/local/libexec/gcc/x86_64-apple-darwin12.5.0/4.8.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o bin/Debug/p_class_test -L/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/../../.. obj/Debug/Thread_Pool/thread_helper.o obj/Debug/Thread_Pool/thread_pool.o obj/Debug/Desktop/kmap_testing/hash_methods.o obj/Debug/Desktop/p_class_test/p_classtest.o obj/Debug/Desktop/p_class_test/refmanager.o -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -v
collect2 version 4.8.1
/usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.8.5 -weak_reference_mismatches non-weak -o bin/Debug/p_class_test -L/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1 -L/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1/../../.. obj/Debug/Thread_Pool/thread_helper.o obj/Debug/Thread_Pool/thread_pool.o obj/Debug/Desktop/kmap_testing/hash_methods.o obj/Debug/Desktop/p_class_test/p_classtest.o obj/Debug/Desktop/p_class_test/refmanager.o -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -v
#(#)PROGRAM:ld PROJECT:ld64-236.4
configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 armv6m armv7m armv7em
Library search paths:
/usr/local/lib/gcc/x86_64-apple-darwin12.5.0/4.8.1
/usr/local/lib
/usr/lib
/usr/local/lib
Framework search paths:
/Library/Frameworks/
/System/Library/Frameworks/