I have not done any RegEx work in MATLAB, I do not think this is an environment issue but I am not sure. Here is my task:
Download NASDQ stock data from ftp://ftp.nasdaqtrader.com/symboldirectory/nasdaqtraded.txt
Extract all stock symbols using a RegEx
Here is the RegEx that I created: ^[A-Z]\|([A-Z]+)\|.+\|[A-Z]\|[A-Z]\|[A-Z]\|\d\d\d\|[A-Z]\|[A-Z]\|.*\|[A-Z]+$
This expression works on some, but not all lines in this file. For example, it works perfectly for this line:
- Y|AAPL|Apple Inc. - Common Stock|Q|Q|N|100|N|N||AAPL
However it does not match anything from this line:
- Y|A|Agilent Technologies, Inc. Common Stock|N| |N|100|N||A|A
- Y|AAMC|Altisource Asset Management Corp Com|A| |N|100|N||AAMC|AAMC
Help please...thanks!
Your file seems to be a set of columns delimited with |, with first line being column names.
Here is a solution to create directly structure array whose field names are obtained from column names:
function [structArray] = ReadNasdaqTraded(filename)
%[
% For debug
if (nargin < 1), filename = 'nasdaqtraded.txt'; end
% Read full file content
text = fileread(filename);
% Split on newline
text = strsplit(strtrim(text), '\n');
header = text{1}; % Keep header
content = text(2:(end-1)); % Keep content
footer = text{end}; %#ok - We don't care about last line (file creation date)
% Build suitable field names
fieldNames = strsplit(header, '|');
fieldNames = strtrim(fieldNames); % Remove any
fieldNames = strrep(fieldNames, ' ', ''); % spaces (TODO: OR special characters)
% Reformat content into cell matrix
count = length(content);
columnCount = length(fieldNames);
cellArray = cell(count, columnCount);
for ri = 1:count,
cellArray(ri, :) = strsplit(content{ri}, '|', 'CollapseDelimiters', false); % Carefull not to collapse empty delimiters
end
% Create structure array from cell content
structArray = cell2struct(cellArray, fieldNames, 2);
%]
It returns some result like this:
>> ReadNasdaqTraded('nasdaqtraded.txt')
ans =
8188x1 struct array with fields:
NasdaqTraded
Symbol
SecurityName
ListingExchange
MarketCategory
ETF
RoundLotSize
TestIssue
FinancialStatus
CQSSymbol
NASDAQSymbol
Easy to use then for whatever extra processing you need ...
Related
IFC is a variation of STEP files used for construction projects. The IFC contains information about the building being constructed. The file is text based and it easy to read. I am trying to parse this information into a python dictionary.
The general format of each line will be similar to the following
2334=IFCMATERIALLAYERSETUSAGE(#2333,.AXIS2.,.POSITIVE.,-180.);
ideally this should be parsed int #2334, IFCMATERIALLAYERSETUSAGE, #2333,.AXIS2.,.POSITIVE.,-180.
I found a solution Regex includes two matches in first match
https://regex101.com/r/RHIu0r/10 for part of the problem.
However, there are some cases the data contains arrays instead of values as the example below
2335=IFCRELASSOCIATESMATERIAL('2ON6$yXXD1GAAH8whbdZmc',#5,$,$,(#40,#221,#268,#281),#2334);
This case need to be parsed as #2335, IFCRELASSOCIATESMATERIAL, '2ON6$yXXD1GAAH8whbdZmc', #5,$,$, [#40,#221,#268,#281],#2334
Where [#40,#221,#268,#281] is a stored in a single variable as an array
The array can be in the middle or the last variable.
Would you be able to assist in creating a regular expression to obtain desired results
I have created https://regex101.com/r/mqrGka/1 with cases to test
Here's a solution that continues from the point you reached with the regular expression in the test cases:
file = """\
#1=IFCOWNERHISTORY(#89024,#44585,$,.NOCHANGE.,$,$,$,1190720890);
#2=IFCSPACE(';;);',#1,$);some text);
#2=IFCSPACE(';;);',#1,$);
#2885=IFCRELAGGREGATES('1gtpBVmrDD_xsEb7NuFKc8',#5,$,$,#2813,(#2840,#2846,#2852,#2858,#2879));
#2334=IFCMATERIALLAYERSETUSAGE(#2333,.AXIS2.,.POSITIVE.,-180.);
#2335=IFCRELASSOCIATESMATERIAL('2ON6$yXXD1GAAH8whbdZmc',#5,$,$,(#40,#221,#268,#281),#2334);
""".splitlines()
import re
d = dict()
for line in file:
m = re.match(r"^#(\d+)\s*=\s*([a-zA-Z0-9]+)\s*\(((?:'[^']*'|[^;'])+)\);", line, re.I|re.M)
attr = m.group(3) # attribute list string
values = [m.group(2)] # first value is the entity type name
while attr:
start = 1
if attr[0] == "'": start += attr.find("'", 1) # don't split at comma within string
if attr[0] == "(": start += attr.find(")", 1) # don't split item within parentheses
end = attr.find(",", start) # search for a comma / end of item
if end < 0: end = len(attr)
value = attr[1:end-1].split(",") if attr[0] == "(" else attr[:end]
if value[0] == "'": value = value[1:-1] # remove quotes
values.append(value)
attr = attr[end+1:] # remove current attribute item
d[m.group(1)] = values # store into dictionary
I have more than 10k text files look similar like this, all of them are similar in format but not in size, sometime is bigger or smaller.
[{u'language': u'english', u'area': 3825.8953168044045, u'class': u'machine printed', u'utf8_string': u'troia', u'image_id': 428035, u'box': [426.42422762784093, 225.33333055900806, 75.15151515151516, 50.909090909090864], u'legibility': u'legible', u'id': 1056659}, {u'language': u'na', u'area': 24201.285583103767, u'id': 1056660, u'image_id': 428035, u'box': [223.99998520359847, 249.57575480143228, 172.12121212121215, 140.6060606060606], u'legibility': u'illegible', u'class': u'machine printed'}]
I want to extract two changeable variable in every text using regular expression.
The output should be like this
box = [223.99998520359847, 249.57575480143228, 172.12121212121215, 140.6060606060606]
box1 = .. sometime there is more than one
&
second output
word = troia
word1 = ... sometime there is more than one word
My code 1: for the word extraction
fid = fopen('text1.txt','r');
C = textscan(fid, '%s','Delimiter','');
fclose(fid);
C = C{:};
Lia = ~cellfun(#isempty, strfind(C,'utf8_string'));
output = [C{find(Lia)}];
expression = 'u''utf8_string'': u+'
matchStr = regexp(output, expression,'match');
My code 1 result give me only the
utf8_string
My code 2: for the box number extraction
s = sprintf('text_.txt');
fid = fopen(s);
tline = fgetl(fid);
C = regexp(tline,'u''box'': +\[([0-9\. ,]+)\]','tokens');
C = cellfun(#(x) x{1},C,'UniformOutput',false)';
M = cell2mat(cellfun(#(x) x', cat(1,C2{:}),'UniformOutput',false));
This code 2 is running but not with every text something i got this error
Error using cat Dimensions of matrices being concatenated are not consistent
If you do not insist on regexp: The input strings looks like json, so the following short code does even more than you want:
% Read the whole file
s = fileread('test.txt');
% Remove the odd u'
s = strrep(s, 'u''', '''');
% Replace ' by "
s = strrep(s, '''', '"');
% See http://www.mathworks.com/matlabcentral/fileexchange/20565
t = parse_json(s);
Now t a is cell object containing structs with the data. So
word = t{1}.utf8_string;
box = cell2mat(t{1}.box);
will give you the first word and box. If you have a newer Matlab version you can probably use jsondecode instead of parse_json.
Any ideas how to detect the 3 in (>3<)and not 3 in (rank_value_3_months)?
"<span data-bind-domain="rank_value_3_months">3</span>"
rank(i) = str2double(regexp(CharData7,'>(\d)<','match','once'))
Here is my whole code for this part, I would like to detect the number inside (>number<) after the pre-prosses file,
%function [feature7] = f7(data)
for i = 1:1
%start read html file
data2=fopen(strcat('DATA\WHOIS\TR\',int2str(i),'.htm'),'r')
CharData = fread(data2, '*char')'; %read text file and store data in CharData
fclose(data2);
%end read html file
register_date = regexp(CharData, '<span data-bind- domain="rank_value_3_months">.*?/span>', 'match'); %checking
%start write only http in image file
fid = fopen(strcat('DATA\PRE-PROCESS_DATA\F23_TR\f23_TR_pdata_',int2str(i)),'w');
for col = 1:numel(register_date)
fprintf(fid,'%s\n',register_date{:,col});
end
fclose(fid);
%end write only http in image file
s = dir(strcat('DATA\PRE-PROCESS_DATA\F23_TR\','f23_TR_pdata_', int2str(i)));
disp(s.bytes);
if s.bytes ~= 0
data7=fopen(strcat('DATA\PRE-PROCESS_DATA\F23_TR\f23_TR_pdata_',int2str(i),''),'r')
CharData7 = fread(data7, '*char')'; %read text file and store data in CharData
fclose(data7);
rank(i) = str2double(regexp(CharData7,'>(\d)<','tokens','once') )
else
end
if rank(i)~=0
feature23(i)=-1;
else
feature23(i)=1;
end
end
Assuming CharData7 is a cell array, you can try this:
%// The find
%// - use 'tokens' to return just the part in brackets
%// - use \s* to make spacing flexible (which is also valid XML/HTML)
rank = regexp(CharData7, '>\s*(\d)\s*<', 'tokens', 'once');
%// Re-format into flat cells
%// ('tokens' returns ALL tokens, which is therefore a cell, regardless
%// of the 'once' setting)
rank = [rank{:}];
%// and convert everything to double
rank(i) = str2double(rank)
So, in a nice illegible one-liner:
rank(i) = str2double([builtin('_brace', regexp(C,'>\s*(\d)\s*<','tokens','once'), :)]);
In case CharData7 is just a single string, you can skip the cell-flattening step:
rank(i) = str2double( regexp(C,'>\s*(\d)\s*<','tokens','once') )
I am trying to read a file that looks as follows:
Data Sampling Rate: 256 Hz
*************************
Channels in EDF Files:
**********************
Channel 1: FP1-F7
Channel 2: F7-T7
Channel 3: T7-P7
Channel 4: P7-O1
File Name: chb01_02.edf
File Start Time: 12:42:57
File End Time: 13:42:57
Number of Seizures in File: 0
File Name: chb01_03.edf
File Start Time: 13:43:04
File End Time: 14:43:04
Number of Seizures in File: 1
Seizure Start Time: 2996 seconds
Seizure End Time: 3036 seconds
So far I have this code:
fid1= fopen('chb01-summary.txt')
data=struct('id',{},'stime',{},'etime',{},'seizenum',{},'sseize',{},'eseize',{});
if fid1 ==-1
error('File cannot be opened ')
end
tline= fgetl(fid1);
while ischar(tline)
i=1;
disp(tline);
end
I want to use regexp to find the expressions and so I did:
line1 = '(.*\d{2} (\.edf)'
data{1} = regexp(tline, line1);
tline=fgetl(fid1);
time = '^Time: .*\d{2]}: \d{2} :\d{2}' ;
data{2}= regexp(tline,time);
tline=getl(fid1);
seizure = '^File: .*\d';
data{4}= regexp(tline,seizure);
if data{4}>0
stime = '^Time: .*\d{5}';
tline=getl(fid1);
data{5}= regexp(tline,seizure);
tline= getl(fid1);
data{6}= regexp(tline,seizure);
end
I tried using a loop to find the line at which file name starts with:
for (firstline<1) || (firstline>1 )
firstline= strfind(tline, 'File Name')
tline=fgetl(fid1);
end
and now I'm stumped.
Suppose that I am at the line at which the information is there, how do I store the information with regexp? I got an empty array for data after running the code once...
Thanks in advance.
I find it the easiest to read the lines into a cell array first using textscan:
%// Read lines as strings
fid = fopen('input.txt', 'r');
C = textscan(fid, '%s', 'Delimiter', '\n');
fclose(fid);
and then apply regexp on it to do the rest of the manipulations:
%// Parse field names and values
C = regexp(C{:}, '^\s*([^:]+)\s*:\s*(.+)\s*', 'tokens');
C = [C{:}]; %// Flatten the cell array
C = reshape([C{:}], 2, []); %// Reshape into name-value pairs
Now you have a cell array C of field names and their corresponding (string) values, and all you have to do is plug it into struct in the correct syntax (using a comma-separated list in this case). Note that the field names have spaces in them, so this needs to be taken care of before they can be used (e.g replace them with underscores):
C(1, :) = strrep(C(1, :), ' ', '_'); %// Replace spaces with underscores
data = struct(C{:});
Here's what I get for your input file:
data =
Data_Sampling_Rate: '256 Hz'
Channel_1: 'FP1-F7'
Channel_2: 'F7-T7'
Channel_3: 'T7-P7'
Channel_4: 'P7-O1'
File_Name: 'chb01_03.edf'
File_Start_Time: '13:43:04'
File_End_Time: '14:43:04'
Number_of_Seizures_in_File: '1'
Seizure_Start_Time: '2996 seconds'
Seizure_End_Time: '3036 seconds'
Of course, it is possible to prettify it even more by converting all relevant numbers to numerical values, grouping the 'channel' fields together and such, but I'll leave this to you. Good luck!
I am trying to retrieve particular parts of a string in a text file such as below and i would like to save them in a text file in MATLAB
Original text file
D 1m8ea_ 1m8e A: d.174.1.1 74583 cl=53931,cf=56511,sf=56512,fa=56513,dm=56514,sp=56515,px=74583
D 1m8eb_ 1m8e B: d.174.1.1 74584 cl=53931,cf=56511,sf=56512,fa=56513,dm=56514,sp=56515,px=74584
D 3e7ia1 3e7i A:77-496 d.174.1.1 158052 cl=53931,cf=56511,sf=56512,fa=56513,dm=56514,sp=56515,px=158052
D 3e7ib1 3e7i B:77-496 d.174.1.1 158053 cl=53931,cf=56511,sf=56512,fa=56513,dm=56514,sp=56515,px=158053
D 2bhja1 2bhj A:77-497 d.174.1.1 128533 cl=53931,cf=56511,sf=56512,fa=56513,dm=56514,sp=56515,px=128533
So basically, I would like to retrieve the pdbcodes id which are labeled as "1m8e", chainid labeled as "A" the Start values which is "77" and stop values which is "496" and i would like all of these values to be saved inside of a fprintf statment.
Is there some kind of method is which i can use in RegExp stating which index its all starting at and retrieve those strings based on the position in the text file for each line?
In the end, all i want to have in the fprinf statement is 1m8e, A, 77, 496.
So far i have two fopen function which reads a file and one that writes to a new file and to read each line by line, also a fprintf statment:
pdbcode = '';
chainid = '';
start = '';
stop = '';
fin = fopen('dir.cla.scop.txt_1.75.txt', 'r');
fout = fopen('output_scop.txt', 'w');
% TODO: Add error check!
while true
line = fgetl(fin); % Get the next line from the file
if ~ischar(line)
% End of file
break;
end
% Print result into output_cath.txt file
fprintf(fout, 'INSERT INTO cath_domains (scop_pdbcode, scop_chainid, scopbegin, scopend) VALUES("%s", %s, %s, %s);\n', pdbcode, chainid, start, stop);
Thank you.
You should be able to strsplit on whitespace, get the third ("1m8e") and fourth elements ("A:77-496"), then repeat the process on the fourth element using ":" as the split character, and then again on the second of those two arguments using "-" as the split character. That's one approach. For example, you could do:
% split on space and tab, and ignore empty tokens
tokens = strsplit(line, ' \t', true);
pdbcode = tokens(3);
% split fourth token from previous split on colon
tokens = strsplit(tokens(4), ':');
chainid = tokens(1);
% split second token from previous split on dash
tokens = strsplit(tokens(2), '-');
start = tokens(1);
stop = tokens(2);
If you really wanted to use regular expressions, you could try the following
pattern = '\S+\s+\S+\s+(\S+)\s+([A-Za-z]+):([0-9]+)-([0-9]+)';
[mat tok] = regexp(line, pattern, 'match', 'tokens');
pdbcode = cell2mat(tok)(1);
chainid = cell2mat(tok)(2);
start = cell2mat(tok)(3);
stop = cell2mat(tok)(4);