I am trying to compile my own code using some functions in this library: tsnnls
This libraries also uses other libraries: Lapack, Blas, Argtable2, TAUCS
It seems that there are some incompatiablity in error handling of function between math.h and taucs.h. Please help me in sorting out these error.
Here are error messages:
$ sudo make
g++ -c tsnnls_test_DKU.c
In file included from /usr/include/math.h:69:0,
from tsnnls_test_DKU.c:96:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:201:74: error: declaration of ‘int isinf(double) throw ()’ has a different exception specifier
__MATHDECL_1 (int,isinf,, (_Mdouble_ __value)) __attribute__ ((__const__));
^
In file included from tsnnls.h:31:0,
from tsnnls_test_DKU.c:57:
taucs_basic/taucs.h:814:12: error: from previous declaration ‘int isinf(double)’
extern int isinf(double);
^
In file included from /usr/include/math.h:69:0,
from tsnnls_test_DKU.c:96:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:204:75: error: declaration of ‘int finite(double) throw ()’ has a different exception specifier
__MATHDECL_1 (int,finite,, (_Mdouble_ __value)) __attribute__ ((__const__));
^
In file included from tsnnls.h:31:0,
from tsnnls_test_DKU.c:57:
taucs_basic/taucs.h:811:12: error: from previous declaration ‘int finite(double)’
extern int finite(double);
^
In file included from /usr/include/math.h:69:0,
from tsnnls_test_DKU.c:96:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:234:74: error: declaration of ‘int isnan(double) throw ()’ has a different exception specifier
__MATHDECL_1 (int,isnan,, (_Mdouble_ __value)) __attribute__ ((__const__));
^
In file included from tsnnls.h:31:0,
from tsnnls_test_DKU.c:57:
taucs_basic/taucs.h:808:12: error: from previous declaration ‘int isnan(double)’
extern int isnan(double);
^
tsnnls_test_DKU.c: In function ‘int main(int, char**)’:
tsnnls_test_DKU.c:442:46: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
colvector_write_mat(outfile,xvals,Acols,"x");
^
make: *** [tsnnls_test_DKU.o] Error 1
Related
I changed from using Dev-c++ to visual studio code. But it seems i can't compile the minGW because of this bug, i got this bug if i use sublime too. Please help me with this.
*sorry for my bad english
C:\MinGW\lib\gcc\mingw32\6.3.0\include\c++\locale.h:36:13: warning: #pragma system_header ignored outside include file
#pragma GCC system_header
^~~~~~~~~~~~~
In file included from c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\mingw32\bits\c++locale.h:41:0,
from c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\bits\localefwd.h:40,
from C:\MinGW\lib\gcc\mingw32\6.3.0\include\c++\locale.h:38:
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\clocale:53:11: error: '::lconv' has not been declared
using ::lconv;
^~~~~
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\clocale:54:11: error: '::setlocale' has not been declared
using ::setlocale;
^~~~~~~~~
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\clocale:55:11: error: '::localeconv' has not been declared
using ::localeconv;
^~~~~~~~~~
In file included from c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\bits\localefwd.h:40:0,
from C:\MinGW\lib\gcc\mingw32\6.3.0\include\c++\locale.h:38:
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\mingw32\bits\c++locale.h: In function 'int std::__convert_from_v(int* const&, char*, int, const char*, ...)':
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\mingw32\bits\c++locale.h:60:19: error: 'setlocale' is not a member of 'std'
char* __old = std::setlocale(LC_NUMERIC, 0);
^~~
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\mingw32\bits\c++locale.h:60:34: error: 'LC_NUMERIC' was not declared in this scope
char* __old = std::setlocale(LC_NUMERIC, 0);
^~~~~~~~~~
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\mingw32\bits\c++locale.h:67:2: error: 'setlocale' is not a member of 'std'
std::setlocale(LC_NUMERIC, "C");
^~~
c:\mingw\lib\gcc\mingw32\6.3.0\include\c++\mingw32\bits\c++locale.h:83:2: error: 'setlocale' is not a member of 'std'
std::setlocale(LC_NUMERIC, __sav);
^~~
I have successfully generated the .py and .cpp files needed using:
swig -c++ -python sf_c_api.i
but now I'm trying to make the shared object (.so) and I'm getting swamped with errors.
g++ -Wall -g -fPIC -I/usr/include/python2.6 -c atob.c fish.c maby_swap.c pwd_file.c pwd.c setup_fish.c shs.c sf_c_api.cpp sha1.cpp sf_c_api_wrap.cpp
Can anyone make heads or tails of this g++ output?
In file included from /usr/include/python2.6/Python.h:8,
from sf_c_api_wrap.cpp:149:
/usr/include/python2.6/pyconfig.h:1038:1: warning: "_XOPEN_SOURCE" redefined
<built-in>: warning: this is the location of the previous definition
In file included from /usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/postypes.h:42,
from /usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h:42,
from /usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/string:42,
from /usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/stdexcept:39,
from sf_c_api_wrap.cpp:3024:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:143: error: ‘::btowc’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:148: error: ‘::fwide’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:149: error: ‘::fwprintf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:150: error: ‘::fwscanf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:153: error: ‘::mbrlen’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:154: error: ‘::mbrtowc’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:155: error: ‘::mbsinit’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:156: error: ‘::mbsrtowcs’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:159: error: ‘::swprintf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:160: error: ‘::swscanf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:162: error: ‘::vfwprintf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:166: error: ‘::vswprintf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:170: error: ‘::vwprintf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:174: error: ‘::wcrtomb’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:185: error: ‘::wcsrtombs’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:195: error: ‘::wctob’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:196: error: ‘::wmemcmp’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:197: error: ‘::wmemcpy’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:198: error: ‘::wmemmove’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:199: error: ‘::wmemset’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:200: error: ‘::wprintf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:201: error: ‘::wscanf’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:205: error: ‘::wcsstr’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:206: error: ‘::wmemchr’ has not been declared
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar: In function ‘wchar_t* std::wcsstr(wchar_t*, const wchar_t*)’:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:223: error: invalid conversion from ‘const wchar_t*’ to ‘wchar_t*’
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:223: error: initializing argument 1 of ‘wchar_t* std::wcsstr(wchar_t*, const wchar_t*)’
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar: In function ‘wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)’:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:227: error: invalid conversion from ‘const wchar_t*’ to ‘wchar_t*’
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/cwchar:227: error: initializing argument 1 of ‘wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)’
In file included from /usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/string:42,
from /usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/stdexcept:39,
from sf_c_api_wrap.cpp:3024:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h: In static member function ‘static int std::char_traits<wchar_t>::compare(const wchar_t*, const wchar_t*, size_t)’:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h:330: error: ‘wmemcmp’ was not declared in this scope/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h: In static member function ‘static const wchar_t* std::char_traits<wchar_t>::find(const wchar_t*, size_t, const wchar_t&)’:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h:338: error: initializing argument 1 of ‘wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)’
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h: In static member function ‘static wchar_t* std::char_traits<wchar_t>::move(wchar_t*, const wchar_t*, size_t)’:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h:342: error: ‘wmemmove’ was not declared in this scope
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h: In static member function ‘static wchar_t* std::char_traits<wchar_t>::copy(wchar_t*, const wchar_t*, size_t)’:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h:346: error: ‘wmemcpy’ was not declared in this scope
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h: In static member function ‘static wchar_t* std::char_traits<wchar_t>::assign(wchar_t*, size_t, wchar_t)’:
/usr/gcc/4.4/lib/gcc/i386-pc-solaris2.11/4.4.4/../../../../include/c++/4.4.4/bits/char_traits.h:350: error: ‘wmemset’ was not declared in this scope
/../include/c++/4.4.4/bits/char_traits.h:338: error: invalid conversion from ‘const wchar_t*’ to ‘wchar_t*’
I found a solution.
The problem is that under solaris:
If -D_XOPEN_SOURCE_EXTENDED=1, g++ cannot compile even an empty body
that #includes <iostream>. If it's undefined, then gcc cannot compile
C code.
[source]
and from /usr/include/python2.6/pyconfig.h:
/* Define to activate Unix95-and-earlier features */
#define _XOPEN_SOURCE_EXTENDED 1
Removing the XOPEN definitions fixed my problem.
Compiling my program I have this error:
/usr/include/xercesc/util/Compilers/GCCDefs.hpp:133:60: error: declaration of ‘int strcasecmp(const char*, const char*)’ has a different exception specifier
/usr/include/string.h:536:12: error: from previous declaration ‘int strcasecmp(const char*, const char*) throw ()’
make: *** [src/test/VFTImageMaterial.o] Error 1
Any idea about this conflict with string.h?
You need to define HAVE_STRCASECMP. This probably should be defined automatically by ./configure in config.h - have you run ./configure?
$ g++ -lthrift -Wall thriftfs.cpp cassandra_constants.cpp Cassandra.cpp cassandra_types.cpp -o thriftfs -I/usr/local/include/thrift -L/usr/local/lib
In file included from /usr/local/include/thrift/protocol/TProtocol.h:23:0,
from /usr/local/include/thrift/TProcessor.h:24,
from Cassandra.h:10,
from t`enter code here`hriftfs.cpp:4:
/usr/local/include/thrift/transport/TTransport.h:34:1: error: ‘uint32_t’ does not name a type
/usr/local/include/thrift/transport/TTransport.h:156:29: error: ISO C++ forbids declaration of ‘buf’ with no type [-fpermissive]
In file included from /usr/local/include/thrift/TProcessor.h:24:0,
from Cassandra.h:10,
from thriftfs.cpp:4:
/usr/local/include/thrift/protocol/TProtocol.h:184:1: error: ‘uint32_t’ does not name a type
In file included from Cassandra.h:10:0,
from thriftfs.cpp:4:
/usr/local/include/thrift/TProcessor.h:72:57: error: ‘uint32_t’ has not been declared
In file included from cassandra_types.h:11:0,
from Cassandra.h:11,
from thriftfs.cpp:4:
/usr/local/include/thrift/TApplicationException.h:94:3: error: ‘uint32_t’ does not name a type
In file included from Cassandra.h:11:0,
from thriftfs.cpp:4:
cassandra_types.h:85:16: error: ‘uint8_t’ does not name a type
In file included from Cassandra.h:11:0,
from thriftfs.cpp:4:
cassandra_types.h:142:3: error: ‘uint32_t’ does not name a type
In file included from Cassandra.h:11:0,
from thriftfs.cpp:4:
cassandra_types.h:1478:16: error: ‘uint8_t’ does not name a type
In file included from Cassandra.h:11:0,
from thriftfs.cpp:4:
cassandra_types.h:1812:3: error: ‘uint32_t’ does not name a type
In file included from thriftfs.cpp:4:0:
Cassandra.h:217:3: error: ‘uint32_t’ does not name a type
Cassandra.h:4857:35: error: ‘org::apache::thrift’ has not been declared
Cassandra.h:4857:62: error: expected ‘,’ or ‘...’ before ‘*’ token
Cassandra.h:4859:71: error: cannot declare pointer to ‘void’ member
Cassandra.h:4859:145: error: template argument 2 is invalid
Cassandra.h:4859:145: error: template argument 4 is invalid
Cassandra.h:4860:45: error: ‘org::apache::thrift’ has not been declared
Cassandra.h:4860:72: error: expected ‘,’ or ‘...’ before ‘*’ token
Cassandra.h:4935:42: error: ‘thrift’ is not a member of ‘org::apache’
Cassandra.h:4935:42: note: suggested alternative:
/usr/local/include/thrift/Thrift.h:75:37: note: ‘apache::thrift’
Cassandra.h:4935:42: error: ‘thrift’ is not a member of ‘org::apache’
Cassandra.h:4935:42: note: suggested alternative:
/usr/local/include/thrift/Thrift.h:75:37: note: ‘apache::thrift’
Cassandra.h:4935:77: error: template argument 1 is invalid
Cassandra.h:4935:105: error: ‘thrift’ is not a member of ‘org::apache’
Cassandra.h:4935:105: note: suggested alternative:
/usr/local/include/thrift/Thrift.h:75:37: note: ‘apache::thrift’
Cassandra.h:4935:105: error: ‘thrift’ is not a member of ‘org::apache’
Cassandra.h:4935:105: note: suggested alternative:
/usr/local/include/thrift/Thrift.h:75:37: note: ‘apache::thrift’
Cassandra.h:4935:140: error: template argument 1 is invalid
Cassandra.h: In constructor ‘org::apache::cassandra::CassandraProcessor::CassandraProcessor(boost::shared_ptr)’:
Cassandra.h:4898:49: error: assignment of read-only location ‘"login"[((org::apache::cassandra::CassandraProcessor*)this)->org::apache::cassandra::CassandraProcessor::processMap_]’
Cassandra.h:4898:49: error: cannot convert ‘void (org::apache::cassandra::CassandraProcessor::*)(int32_t, int) {aka void (org::apach
Add the following defines:
g++ -DHAVE_NETINET_IN_H -DHAVE_INTTYPES_H ...
Or add #include <stdint.h> before including Thrift.h in your code.
See the discussion at THRIFT-1326. The issue is suppposedly fixed in thrift 0.9.
It looks like your problem is a compiler issue.
It can't find the type "uint32_t"
There is another question on SO regarding this:
'uint32_t' identifier not found error
Quoted from user templatetypedef
This type is defined in the C header which is not currently
a part of the C++ standard. According to the Wikipedia page on the
header, it hasn't shipped with Visual Studio until VS2010.
In the meantime, you could probably fake up your own version of the
header by adding typedefs that map Microsoft's custom integer types to
the types expected by C. For example:
typedef __int32 int32_t; typedef unsigned __int32 uint32_t; /* ...
etc. ... */ Hope this helps!
I installed tidy-dev from ubuntu repository, checked installation path - it's okay (/usr/include/tidy).
But I can not find a true flags to compile my c++ script with include tidy c++ wrapper tidyx.h from http://users.rcn.com/creitzel/tidy/tidyx.h
Can you help me?
My test script file named 1.cpp, tidyx.h I put near. 1.cpp content:
#include "tidyx.h"
int main()
{
}
I try it, but no-good:
$ gcc -I/usr/include/tidy 1.cpp -ltidy
In file included from 1.cpp:1:
tidyx.h: In constructor ‘Tidy::Source::Source()’:
tidyx.h:83: error: invalid conversion from ‘int (*)(ulong)’ to ‘int (*)(void*)’
tidyx.h:84: error: invalid conversion from ‘void (*)(ulong, byte)’ to ‘void (*)(void*, byte)’
tidyx.h:85: error: invalid conversion from ‘Bool (*)(ulong)’ to ‘Bool (*)(void*)’
tidyx.h:86: error: invalid conversion from ‘ulong’ to ‘void*’
tidyx.h: In constructor ‘Tidy::Sink::Sink()’:
tidyx.h:123: error: invalid conversion from ‘void (*)(ulong, byte)’ to ‘void (*)(void*, byte)’
tidyx.h:124: error: invalid conversion from ‘ulong’ to ‘void*’
tidyx.h: In member function ‘void Tidy::Buffer::Attach(void*, uint)’:
tidyx.h:165: error: invalid conversion from ‘void*’ to ‘byte*’
tidyx.h:165: error: initializing argument 2 of ‘void tidyBufAttach(TidyBuffer*, byte*, uint)’
tidyx.h: In member function ‘int Tidy::Document::Create()’:
tidyx.h:496: error: invalid conversion from ‘ulong’ to ‘void*’
tidyx.h:496: error: initializing argument 2 of ‘void tidySetAppData(const _TidyDoc*, void*)’
tidyx.h: In member function ‘void Tidy::Document::SetAppData(ulong)’:
tidyx.h:511: error: invalid conversion from ‘ulong’ to ‘void*’
tidyx.h:511: error: initializing argument 2 of ‘void tidySetAppData(const _TidyDoc*, void*)’
tidyx.h: In member function ‘ulong Tidy::Document::GetAppData()’:
tidyx.h:512: error: invalid conversion from ‘void*’ to ‘ulong’
To include a header file you need to use the #include preprocessor directive. It will look for the header file in compiler include paths.
If tidyx.h is in /usr/include/tidy you could put in your source file:
#include <tidy/tidyx.h>
and then compile just with gcc script.cpp, since /usr/include is most likely a default include path for your compiler.
Otherwise you could also put in your source file:
#include <tidyx.h>
And then tell GCC to look in /usr/include/tidy: gcc -I/usr/include/tidy script.cpp
At this point the header will be found. If you'll get other errors related to tidy (eg: some tidy functions are not defined) you'll need to link your binary to some library using GCC -l option.
EDIT after OP's massive edit.
Your problem here is that tidyx.h contains C++ code, and also your source file, looking to its extensions, seems to be a C++ source file. You'll need a C++ compiler in order to compile it. Use g++ instead of gcc:
g++ script.cpp