Failed to instantiate JaxbAnnotationIntrospector - web-services

I am trying to run this example of REST from www.mkyong.com/webservices/jax-rs/json-example-with-jersey-jackson/
But I am always getting this error.
[ERROR ] SRVE0777E: Exception thrown by application class 'org.codehaus.jackson.jaxrs.MapperConfigurator._resolveIntrospector:173'
java.lang.IllegalStateException: Failed to instantiate JaxbAnnotationIntrospector: org.codehaus.jackson.xc.JaxbAnnotationIntrospector cannot be cast to org.codehaus.jackson.map.AnnotationIntrospector
at org.codehaus.jackson.jaxrs.MapperConfigurator._resolveIntrospector(MapperConfigurator.java:173)
at org.codehaus.jackson.jaxrs.MapperConfigurator._resolveIntrospectors(MapperConfigurator.java:144)
at org.codehaus.jackson.jaxrs.MapperConfigurator._setAnnotations(MapperConfigurator.java:131)
at org.codehaus.jackson.jaxrs.MapperConfigurator.getDefaultMapper(MapperConfigurator.java:70)
at org.codehaus.jackson.jaxrs.JacksonJsonProvider.locateMapper(JacksonJsonProvider.java:609)
at org.codehaus.jackson.jaxrs.JacksonJsonProvider.writeTo(JacksonJsonProvider.java:488)
at com.sun.jersey.json.impl.provider.entity.JacksonProviderProxy.writeTo(JacksonProviderProxy.java:160)
at com.sun.jersey.spi.container.ContainerResponse.write(ContainerResponse.java:306)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1479)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1391)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1381)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:537)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:699)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:668)
at com.ibm.ws.webcontainer.servlet.ServletWrapper.service(ServletWrapper.java:1274)
at [internal classes]
Caused by: java.lang.ClassCastException: org.codehaus.jackson.xc.JaxbAnnotationIntrospector cannot be cast to org.codehaus.jackson.map.AnnotationIntrospector
at org.codehaus.jackson.jaxrs.MapperConfigurator._resolveIntrospector(MapperConfigurator.java:171)
... 16 more
[ERROR ] SRVE0315E: An execption occurred: com.ibm.ws.webcontainer.webapp.WebAppErrorReport: java.lang.IllegalStateException: Failed to instantiate JaxbAnnotationIntrospector: org.codehaus.jackson.xc.JaxbAnnotationIntrospector cannot be cast to org.codehaus.jackson.map.AnnotationIntrospector
at org.codehaus.jackson.jaxrs.MapperConfigurator._resolveIntrospector(MapperConfigurator.java:173)
at org.codehaus.jackson.jaxrs.MapperConfigurator._resolveIntrospectors(MapperConfigurator.java:144)
at org.codehaus.jackson.jaxrs.MapperConfigurator._setAnnotations(MapperConfigurator.java:131)
at org.codehaus.jackson.jaxrs.MapperConfigurator.getDefaultMapper(MapperConfigurator.java:70)
at org.codehaus.jackson.jaxrs.JacksonJsonProvider.locateMapper(JacksonJsonProvider.java:609)
at org.codehaus.jackson.jaxrs.JacksonJsonProvider.writeTo(JacksonJsonProvider.java:488)
at com.sun.jersey.json.impl.provider.entity.JacksonProviderProxy.writeTo(JacksonProviderProxy.java:160)
at com.sun.jersey.spi.container.ContainerResponse.write(ContainerResponse.java:306)
at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1479)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1391)
at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1381)
at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:537)
at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:699)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:668)
at com.ibm.ws.webcontainer.servlet.ServletWrapper.service(ServletWrapper.java:1274)
at [internal classes]
Caused by: java.lang.IllegalStateException: Failed to instantiate JaxbAnnotationIntrospector: org.codehaus.jackson.xc.JaxbAnnotationIntrospector cannot be cast to org.codehaus.jackson.map.AnnotationIntrospector
... 18 more
Caused by: java.lang.ClassCastException: org.codehaus.jackson.xc.JaxbAnnotationIntrospector cannot be cast to org.codehaus.jackson.map.AnnotationIntrospector
at org.codehaus.jackson.jaxrs.MapperConfigurator._resolveIntrospector(MapperConfigurator.java:171)
... 16 more
Can anyone please help me with it. I have the following jars in my classpath -

Related

AWS EMR Hive fails due to serde2/serde

I am running EMR hive query on S3 and it fails saying "Map operator initialization failed"
I tried to set HADOOP_CLASSPATH as below, still no luck.
set HADOOP_CLASSPATH=/usr/lib/hive/lib/*;
Also, adding below jar,
add jar /usr/hive/json-serde-1.3.7-jar-with-dependencies.jar . This jar file is present at the given path.
I am not sure why it is complaining as below:
Caused by: java.lang.NoClassDefFoundError: org/apache/hadoop/hive/serde2/SerDe
The log is as below:
Status: Failed
Vertex failed, vertexName=Map 10, vertexId=vertex_1515176779844_0076_2_02, diagnostics=[Task failed,
taskId=task_1515176779844_0076_2_02_000031, diagnostics=[TaskAttempt 0
failed, info=[Error: Error while running task ( failure ) :
attempt_1515176779844_0076_2_02_000031_0:java.lang.RuntimeException:
java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:211)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:168)
at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:354)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:184)
... 14 more
Caused by: java.lang.NoClassDefFoundError: org/apache/hadoop/hive/serde2/SerDe
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2134)
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2099)
at org.apache.hadoop.hive.ql.plan.PartitionDesc.getDeserializer(PartitionDesc.java:177)
at org.apache.hadoop.hive.ql.exec.MapOperator.getConvertedOI(MapOperator.java:295)
at org.apache.hadoop.hive.ql.exec.MapOperator.setChildren(MapOperator.java:420)
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:286)
... 15 more
Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.hive.serde2.SerDe
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 35 more
], TaskAttempt 1 failed, info=[Error: Error while running task ( failure ) :
attempt_1515176779844_0076_2_02_000031_1:java.lang.RuntimeException:
java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:211)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:168)
at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:354)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:184)
... 14 more
Caused by: java.lang.NoClassDefFoundError: org/apache/hadoop/hive/serde2/SerDe
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2134)
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2099)
at org.apache.hadoop.hive.ql.plan.PartitionDesc.getDeserializer(PartitionDesc.java:177)
at org.apache.hadoop.hive.ql.exec.MapOperator.getConvertedOI(MapOperator.java:295)
at org.apache.hadoop.hive.ql.exec.MapOperator.setChildren(MapOperator.java:420)
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:286)
... 15 more
Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.hive.serde2.SerDe
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 35 more
], TaskAttempt 2 failed, info=[Error: Error while running task ( failure ) :
attempt_1515176779844_0076_2_02_000031_2:java.lang.RuntimeException:
java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:211)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:168)
at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:354)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:184)
... 14 more
Caused by: java.lang.NoClassDefFoundError: org/apache/hadoop/hive/serde2/SerDe
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2134)
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2099)
at org.apache.hadoop.hive.ql.plan.PartitionDesc.getDeserializer(PartitionDesc.java:177)
at org.apache.hadoop.hive.ql.exec.MapOperator.getConvertedOI(MapOperator.java:295)
at org.apache.hadoop.hive.ql.exec.MapOperator.setChildren(MapOperator.java:420)
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:286)
... 15 more
Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.hive.serde2.SerDe
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 35 more
], TaskAttempt 3 failed, info=[Error: Error while running task ( failure ) :
attempt_1515176779844_0076_2_02_000031_3:java.lang.RuntimeException:
java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:211)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:168)
at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:354)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:184)
... 14 more
Caused by: java.lang.NoClassDefFoundError: org/apache/hadoop/hive/serde2/SerDe
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2134)
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2099)
at org.apache.hadoop.hive.ql.plan.PartitionDesc.getDeserializer(PartitionDesc.java:177)
at org.apache.hadoop.hive.ql.exec.MapOperator.getConvertedOI(MapOperator.java:295)
at org.apache.hadoop.hive.ql.exec.MapOperator.setChildren(MapOperator.java:420)
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:286)
... 15 more
Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.hive.serde2.SerDe
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 35 more
]], Vertex did not succeed due to OWN_TASK_FAILURE, failedTasks:1 killedTasks:159, Vertex vertex_1515176779844_0076_2_02 [Map 10]
killed/failed due to:OWN_TASK_FAILURE]
Vertex killed, vertexName=Reducer 7, vertexId=vertex_1515176779844_0076_2_04, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:12, Vertex
vertex_1515176779844_0076_2_04 [Reducer 7] killed/failed due
to:OTHER_VERTEX_FAILURE]
Vertex killed, vertexName=Reducer 2, vertexId=vertex_1515176779844_0076_2_06, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:1, Vertex
vertex_1515176779844_0076_2_06 [Reducer 2] killed/failed due
to:OTHER_VERTEX_FAILURE]
Vertex killed, vertexName=Reducer 4, vertexId=vertex_1515176779844_0076_2_08, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:7, Vertex
vertex_1515176779844_0076_2_08 [Reducer 4] killed/failed due
to:OTHER_VERTEX_FAILURE]
Vertex killed, vertexName=Reducer 3, vertexId=vertex_1515176779844_0076_2_07, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:7, Vertex
vertex_1515176779844_0076_2_07 [Reducer 3] killed/failed due
to:OTHER_VERTEX_FAILURE]
Vertex killed, vertexName=Reducer 5, vertexId=vertex_1515176779844_0076_2_10, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:14, Vertex
vertex_1515176779844_0076_2_10 [Reducer 5] killed/failed due
to:OTHER_VERTEX_FAILURE]
Vertex killed, vertexName=Reducer 11, vertexId=vertex_1515176779844_0076_2_09, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:12, Vertex
vertex_1515176779844_0076_2_09 [Reducer 11] killed/failed due
to:OTHER_VERTEX_FAILURE]
Vertex killed, vertexName=Map 6, vertexId=vertex_1515176779844_0076_2_03, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:165, Vertex
vertex_1515176779844_0076_2_03 [Map 6] killed/failed due
to:OTHER_VERTEX_FAILURE]
Vertex killed, vertexName=Map 1, vertexId=vertex_1515176779844_0076_2_05, diagnostics=[Vertex received
Kill while in RUNNING state., Vertex did not succeed due to
OTHER_VERTEX_FAILURE, failedTasks:0 killedTasks:139, Vertex
vertex_1515176779844_0076_2_05 [Map 1] killed/failed due
to:OTHER_VERTEX_FAILURE]
DAG did not succeed due to VERTEX_FAILURE. failedVertices:1 killedVertices:8
FAILED: Execution Error, return code 2 from org.apache.hadoop.hive.ql.exec.tez.TezTask. Vertex failed,
vertexName=Map 10, vertexId=vertex_1515176779844_0076_2_02,
diagnostics=[Task failed, taskId=task_1515176779844_0076_2_02_000031,
diagnostics=[TaskAttempt 0 failed, info=[Error: Error while running
task ( failure ) :
attempt_1515176779844_0076_2_02_000031_0:java.lang.RuntimeException:
java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:211)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.run(TezProcessor.java:168)
at org.apache.tez.runtime.LogicalIOProcessorRuntimeTask.run(LogicalIOProcessorRuntimeTask.java:370)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:73)
at org.apache.tez.runtime.task.TaskRunner2Callable$1.run(TaskRunner2Callable.java:61)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:422)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1698)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:61)
at org.apache.tez.runtime.task.TaskRunner2Callable.callInternal(TaskRunner2Callable.java:37)
at org.apache.tez.common.CallableWithNdc.call(CallableWithNdc.java:36)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: Map operator initialization failed
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:354)
at org.apache.hadoop.hive.ql.exec.tez.TezProcessor.initializeAndRunProcessor(TezProcessor.java:184)
... 14 more
Caused by: java.lang.NoClassDefFoundError: org/apache/hadoop/hive/serde2/SerDe
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:348)
at org.apache.hadoop.conf.Configuration.getClassByNameOrNull(Configuration.java:2134)
at org.apache.hadoop.conf.Configuration.getClassByName(Configuration.java:2099)
at org.apache.hadoop.hive.ql.plan.PartitionDesc.getDeserializer(PartitionDesc.java:177)
at org.apache.hadoop.hive.ql.exec.MapOperator.getConvertedOI(MapOperator.java:295)
at org.apache.hadoop.hive.ql.exec.MapOperator.setChildren(MapOperator.java:420)
at org.apache.hadoop.hive.ql.exec.tez.MapRecordProcessor.init(MapRecordProcessor.java:286)
... 15 more
Caused by: java.lang.ClassNotFoundException: org.apache.hadoop.hive.serde2.SerDe
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:335)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 35 more
], TaskAttempt 1 failed, info=[Error: Error while running task ( failure ) :
attempt_1515176779844_0076_2_02_000031_1:java.lang.RuntimeException:
java.lang.RuntimeException: Map operator initialization failed

Error in migrating OWL data into GRAKN

I am trying to migrate a OWL data into GRAKN using the migration script as described here. I started my GRAKN engine and then executed ./migration.sh owl -i /home/file1.owl -k grakn but I get this error:
Migrating data /home/file1.owl using Grakn Engine localhost:4567 into graph grakn
Exception in thread "main" java.lang.RuntimeException: java.lang.IllegalArgumentException: Graph Factory [ai.grakn.factory.TitanInternalFactory] is not valid
at ai.grakn.factory.FactoryBuilder.newFactory(FactoryBuilder.java:101)
at ai.grakn.factory.FactoryBuilder.getGraknGraphFactory(FactoryBuilder.java:82)
at ai.grakn.factory.FactoryBuilder.getFactory(FactoryBuilder.java:62)
at ai.grakn.factory.GraknSessionImpl.configureGraphFactoryRemote(GraknSessionImpl.java:153)
at ai.grakn.factory.GraknSessionImpl.configureGraphFactory(GraknSessionImpl.java:134)
at ai.grakn.factory.GraknSessionImpl.getConfiguredFactory(GraknSessionImpl.java:90)
at ai.grakn.factory.GraknSessionImpl.open(GraknSessionImpl.java:79)
at ai.grakn.migration.owl.Main.runOwl(Main.java:64)
at java.util.stream.ForEachOps$ForEachOp$OfRef.accept(ForEachOps.java:184)
at java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:193)
at java.util.stream.ReferencePipeline$2$1.accept(ReferencePipeline.java:175)
at java.util.Collections$2.tryAdvance(Collections.java:4717)
at java.util.Collections$2.forEachRemaining(Collections.java:4725)
at java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:481)
at java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:471)
at java.util.stream.ForEachOps$ForEachOp.evaluateSequential(ForEachOps.java:151)
at java.util.stream.ForEachOps$ForEachOp$OfRef.evaluateSequential(ForEachOps.java:174)
at java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:234)
at java.util.stream.ReferencePipeline.forEach(ReferencePipeline.java:418)
at ai.grakn.migration.owl.Main.main(Main.java:52)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at ai.grakn.factory.FactoryBuilder.newFactory(FactoryBuilder.java:99)
... 19 more
Caused by: java.lang.IllegalArgumentException: Could not instantiate implementation: com.thinkaurelius.titan.diskstorage.cassandra.astyanax.AstyanaxStoreManager
at com.thinkaurelius.titan.util.system.ConfigurationUtil.instantiate(ConfigurationUtil.java:55)
at com.thinkaurelius.titan.diskstorage.Backend.getImplementationClass(Backend.java:473)
at com.thinkaurelius.titan.diskstorage.Backend.getStorageManager(Backend.java:407)
at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.<init>(GraphDatabaseConfiguration.java:1325)
at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:94)
at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:84)
at com.thinkaurelius.titan.core.TitanFactory$Builder.open(TitanFactory.java:139)
at ai.grakn.factory.TitanInternalFactory.configureGraph(TitanInternalFactory.java:113)
at ai.grakn.factory.TitanInternalFactory.newTitanGraph(TitanInternalFactory.java:88)
at ai.grakn.factory.TitanInternalFactory.buildTinkerPopGraph(TitanInternalFactory.java:84)
at ai.grakn.factory.TitanInternalFactory.buildTinkerPopGraph(TitanInternalFactory.java:60)
at ai.grakn.factory.AbstractInternalFactory.getTinkerPopGraph(AbstractInternalFactory.java:141)
at ai.grakn.factory.AbstractInternalFactory.getTinkerPopGraph(AbstractInternalFactory.java:135)
at ai.grakn.factory.AbstractInternalFactory.getGraph(AbstractInternalFactory.java:110)
at ai.grakn.factory.AbstractInternalFactory.open(AbstractInternalFactory.java:95)
at ai.grakn.factory.SystemKeyspace.loadSystemOntology(SystemKeyspace.java:114)
at ai.grakn.factory.FactoryBuilder.newFactory(FactoryBuilder.java:107)
at ai.grakn.factory.FactoryBuilder.getGraknGraphFactory(FactoryBuilder.java:82)
at ai.grakn.factory.AbstractInternalFactory.getSystemFactory(AbstractInternalFactory.java:80)
at ai.grakn.factory.AbstractInternalFactory.<init>(AbstractInternalFactory.java:74)
at ai.grakn.factory.TitanInternalFactory.<init>(TitanInternalFactory.java:64)
... 24 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at com.thinkaurelius.titan.util.system.ConfigurationUtil.instantiate(ConfigurationUtil.java:44)
... 44 more
Caused by: com.thinkaurelius.titan.diskstorage.TemporaryBackendException: Temporary failure in storage backend
at com.thinkaurelius.titan.diskstorage.cassandra.astyanax.AstyanaxStoreManager.ensureKeyspaceExists(AstyanaxStoreManager.java:580)
at com.thinkaurelius.titan.diskstorage.cassandra.astyanax.AstyanaxStoreManager.<init>(AstyanaxStoreManager.java:291)
... 49 more
Is there any mistake in the command I am executing to do the migration? What can I do to resolve this issue?
UPDATE: I was able to resolve the above issue but now I am getting following error in trying to start the graql shell:
Exception in thread "graql-session-0" java.util.ConcurrentModificationException
at java.util.HashMap$HashIterator.nextNode(HashMap.java:1437)
at java.util.HashMap$ValueIterator.next(HashMap.java:1466)
at ai.grakn.graph.internal.AbstractGraknGraph.loadOntologyCacheIntoTransactionCache(AbstractGraknGraph.java:337)
at ai.grakn.graph.internal.AbstractGraknGraph.getConceptLog(AbstractGraknGraph.java:307)
at ai.grakn.graph.internal.AbstractGraknGraph.buildType(AbstractGraknGraph.java:450)
at ai.grakn.graph.internal.AbstractGraknGraph.getTypeByLabel(AbstractGraknGraph.java:548)
at ai.grakn.graph.internal.AbstractGraknGraph.getMetaConcept(AbstractGraknGraph.java:608)
at ai.grakn.engine.session.GraqlSession.getTypes(GraqlSession.java:371)
at ai.grakn.engine.session.GraqlSession.sendTypes(GraqlSession.java:348)
at ai.grakn.engine.session.GraqlSession.lambda$new$48(GraqlSession.java:105)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)

Storm [ERROR] Async loop died

I am using storm 0.9.3.
I am running a topology in python, in which spouts read a URL off the Kafka queue and then pass it to a next bolt which fetches that page using python requests module.
Here is my topology definition in java.
public static void main(String[] args) throws Exception {
TopologyBuilder builder = new TopologyBuilder();
builder.setSpout("URLSpout", new URLSpout(), 1);
builder.setBolt("ScrapeBolt", new ScrapeBolt(), 30).shuffleGrouping("URLSpout");
Config conf = new Config();
//conf.setDebug(true);
conf.setMessageTimeoutSecs(50);
conf.setNumWorkers(3);
conf.setMaxSpoutPending(50);
conf.put(Config.TOPOLOGY_RECEIVER_BUFFER_SIZE, 8);
conf.put(Config.TOPOLOGY_TRANSFER_BUFFER_SIZE, 32);
conf.put(Config.TOPOLOGY_EXECUTOR_RECEIVE_BUFFER_SIZE, 16384);
conf.put(Config.TOPOLOGY_EXECUTOR_SEND_BUFFER_SIZE, 16384);
StormSubmitter.submitTopologyWithProgressBar(args[0], conf, builder.createTopology());
}
After the topology is submitted, it runs fine, but after some time the topology halts. When checked the logs, I found these errors.
2015-06-09T17:34:49.733+0530 b.s.util [ERROR] Async loop died!
java.lang.RuntimeException: pid:5736, name:URLSpout exitCode:-1, errorString:
at backtype.storm.spout.ShellSpout.querySubprocess(ShellSpout.java:178) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.spout.ShellSpout.nextTuple(ShellSpout.java:91) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.daemon.executor$fn__3373$fn__3388$fn__3417.invoke(executor.clj:565) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.util$async_loop$fn__464.invoke(util.clj:463) ~[storm-core-0.9.3.jar:0.9.3]
at clojure.lang.AFn.run(AFn.java:24) [clojure-1.5.1.jar:na]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_45-internal]
Caused by: java.lang.RuntimeException: Unknown command received: error
at backtype.storm.spout.ShellSpout.querySubprocess(ShellSpout.java:173) ~[storm-core-0.9.3.jar:0.9.3]
... 5 common frames omitted
2015-06-09T17:34:49.734+0530 b.s.d.executor [ERROR]
java.lang.RuntimeException: pid:5736, name:URLSpout exitCode:-1, errorString:
at backtype.storm.spout.ShellSpout.querySubprocess(ShellSpout.java:178) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.spout.ShellSpout.nextTuple(ShellSpout.java:91) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.daemon.executor$fn__3373$fn__3388$fn__3417.invoke(executor.clj:565) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.util$async_loop$fn__464.invoke(util.clj:463) ~[storm-core-0.9.3.jar:0.9.3]
at clojure.lang.AFn.run(AFn.java:24) [clojure-1.5.1.jar:na]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_45-internal]
Caused by: java.lang.RuntimeException: Unknown command received: error
at backtype.storm.spout.ShellSpout.querySubprocess(ShellSpout.java:173) ~[storm-core-0.9.3.jar:0.9.3]
... 5 common frames omitted
2015-06-09T17:34:49.745+0530 b.s.util [ERROR] Halting process: ("Worker died")
java.lang.RuntimeException: ("Worker died")
at backtype.storm.util$exit_process_BANG_.doInvoke(util.clj:325) [storm-core-0.9.3.jar:0.9.3]
at clojure.lang.RestFn.invoke(RestFn.java:423) [clojure-1.5.1.jar:na]
at backtype.storm.daemon.worker$fn__3812$fn__3813.invoke(worker.clj:456) [storm-core-0.9.3.jar:0.9.3]
at backtype.storm.daemon.executor$mk_executor_data$fn__3274$fn__3275.invoke(executor.clj:240) [storm-core-0.9.3.jar:0.9.3]
at backtype.storm.util$async_loop$fn__464.invoke(util.clj:473) [storm-core-0.9.3.jar:0.9.3]
at clojure.lang.AFn.run(AFn.java:24) [clojure-1.5.1.jar:na]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_45-internal]
And
java.lang.RuntimeException: backtype.storm.multilang.NoOutputException: Pipe to subprocess seems to be broken! No output read.
Serializer Exception:
(Unable to capture error stream)
at backtype.storm.utils.ShellProcess.readShellMsg(ShellProcess.java:101) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.task.ShellBolt$BoltReaderRunnable.run(ShellBolt.java:318) ~[storm-core-0.9.3.jar:0.9.3]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_45-internal]
2015-06-09T17:34:49.779+0530 o.a.s.z.s.NIOServerCnxnFactory [ERROR] Thread Thread[Thread-37,5,main] died
java.lang.RuntimeException: java.lang.InterruptedException
at backtype.storm.util$wrap_in_runtime.invoke(util.clj:44) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.zookeeper$exists_node_QMARK_$fn__1668.invoke(zookeeper.clj:102) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.zookeeper$exists_node_QMARK_.invoke(zookeeper.clj:98) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.zookeeper$mkdirs.invoke(zookeeper.clj:114) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.cluster$mk_distributed_cluster_state$reify__1915.mkdirs(cluster.clj:119) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.cluster$mk_storm_cluster_state$reify__2372.report_error(cluster.clj:397) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.daemon.executor$throttled_report_error_fn$fn__3221.invoke(executor.clj:180) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.daemon.executor$fn__3441$fn$reify__3486.reportError(executor.clj:738) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.task.OutputCollector.reportError(OutputCollector.java:223) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.task.ShellBolt.die(ShellBolt.java:283) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.task.ShellBolt.access$400(ShellBolt.java:69) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.task.ShellBolt$BoltReaderRunnable.run(ShellBolt.java:341) ~[storm-core-0.9.3.jar:0.9.3]
at java.lang.Thread.run(Thread.java:745) ~[na:1.8.0_45-internal]
Caused by: java.lang.InterruptedException: null
at java.lang.Object.wait(Native Method) ~[na:1.8.0_45-internal]
at java.lang.Object.wait(Object.java:502) ~[na:1.8.0_45-internal]
at org.apache.storm.zookeeper.ClientCnxn.submitRequest(ClientCnxn.java:1342) ~[storm-core-0.9.3.jar:0.9.3]
at org.apache.storm.zookeeper.ZooKeeper.exists(ZooKeeper.java:1040) ~[storm-core-0.9.3.jar:0.9.3]
at org.apache.storm.curator.framework.imps.ExistsBuilderImpl$2.call(ExistsBuilderImpl.java:172) ~[storm-core-0.9.3.jar:0.9.3]
at org.apache.storm.curator.framework.imps.ExistsBuilderImpl$2.call(ExistsBuilderImpl.java:161) ~[storm-core-0.9.3.jar:0.9.3]
at org.apache.storm.curator.RetryLoop.callWithRetry(RetryLoop.java:107) ~[storm-core-0.9.3.jar:0.9.3]
at org.apache.storm.curator.framework.imps.ExistsBuilderImpl.pathInForeground(ExistsBuilderImpl.java:157) ~[storm-core-0.9.3.jar:0.9.3]
at org.apache.storm.curator.framework.imps.ExistsBuilderImpl.forPath(ExistsBuilderImpl.java:148) ~[storm-core-0.9.3.jar:0.9.3]
at org.apache.storm.curator.framework.imps.ExistsBuilderImpl.forPath(ExistsBuilderImpl.java:36) ~[storm-core-0.9.3.jar:0.9.3]
at backtype.storm.zookeeper$exists_node_QMARK_$fn__1668.invoke(zookeeper.clj:101) ~[storm-core-0.9.3.jar:0.9.3]
... 11 common frames omitted
2015-06-09T17:34:49.780+0530 b.s.t.ShellBolt [ERROR] Halting process: ShellBolt died.
And
2015-06-09T18:13:15.392+0530 b.s.s.ShellSpout [ERROR] Halting process: ShellSpout died.
java.lang.RuntimeException: subprocess heartbeat timeout
at backtype.storm.spout.ShellSpout$SpoutHeartbeatTimerTask.run(ShellSpout.java:255) [storm-core-0.9.3.jar:0.9.3]
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) [na:1.8.0_45-internal]
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308) [na:1.8.0_45-internal]
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180) [na:1.8.0_45-internal]
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294) [na:1.8.0_45-internal]
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) [na:1.8.0_45-internal]
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) [na:1.8.0_45-internal]
at java.lang.Thread.run(Thread.java:745) [na:1.8.0_45-internal]
Can someone,Please help me resolving this?

You're hitting https://issues.apache.org/jira/browse/STORM-796 which is fixed via Storm 0.9.5.
Since Storm 0.9.4 and 0.9.5 contains only bugfixes, so you can upgrade your Storm version from 0.9.3 to 0.9.5 safely.

WSO2 Developer Studio Registry Browser Perspective Exception

I am geting an exception in the eclipse logs hen I try to access my registry entries in the Registry Browser perspective (and when I try to import registry entries into a registry project).
the exception is as follows: (any assistance would be much appreciated)
!MESSAGE java.lang.RuntimeException: java.lang.ClassNotFoundException: org.apache.abdera.parser.stax.FOMParser
!STACK 0
java.lang.RuntimeException: java.lang.RuntimeException: java.lang.ClassNotFoundException: org.apache.abdera.parser.stax.FOMParser
at org.apache.abdera.util.Discover.locate(Discover.java:56)
at org.apache.abdera.util.Discover.locate(Discover.java:23)
at org.apache.abdera.util.AbderaConfiguration.newParserInstance(AbderaConfiguration.java:320)
at org.apache.abdera.Abdera.newParser(Abdera.java:224)
at org.apache.abdera.Abdera.getParser(Abdera.java:156)
at org.apache.abdera.protocol.client.AbstractClientResponse.<init>(AbstractClientResponse.java:57)
at org.apache.abdera.protocol.client.CommonsResponse.<init>(CommonsResponse.java:44)
at org.apache.abdera.protocol.client.AbderaClient.execute(AbderaClient.java:796)
at org.apache.abdera.protocol.client.AbderaClient.get(AbderaClient.java:235)
at org.wso2.carbon.registry.app.RemoteRegistry.get(RemoteRegistry.java:162)
at org.wso2.developerstudio.eclipse.greg.base.core.Registry.get(Registry.java:825)
at org.wso2.developerstudio.eclipse.greg.manager.remote.views.ResourceInfoViewer.updateGeneralInfo(ResourceInfoViewer.java:269)
at org.wso2.developerstudio.eclipse.greg.manager.remote.views.ResourceInfoViewer.updateInfo(ResourceInfoViewer.java:224)
at org.wso2.developerstudio.eclipse.greg.manager.remote.views.ResourceInfoViewer.updateMe(ResourceInfoViewer.java:334)
at org.wso2.developerstudio.eclipse.greg.manager.remote.views.RegistryBrowserView$48.widgetSelected(RegistryBrowserView.java:2391)
at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:248)
at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84)
at org.eclipse.swt.widgets.Display.sendEvent(Display.java:4134)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1458)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1481)
at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1466)
at org.eclipse.swt.widgets.Widget.notifyListeners(Widget.java:1271)
at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3980)
at org.eclipse.swt.widgets.Display.applicationNextEventMatchingMask(Display.java:4869)
at org.eclipse.swt.widgets.Display.applicationProc(Display.java:5239)
at org.eclipse.swt.internal.cocoa.OS.objc_msgSendSuper(Native Method)
at org.eclipse.swt.widgets.Widget.callSuper(Widget.java:221)
at org.eclipse.swt.widgets.Widget.mouseDownSuper(Widget.java:1093)
at org.eclipse.swt.widgets.Tree.mouseDownSuper(Tree.java:2052)
at org.eclipse.swt.widgets.Widget.mouseDown(Widget.java:1085)
at org.eclipse.swt.widgets.Control.mouseDown(Control.java:2538)
at org.eclipse.swt.widgets.Tree.mouseDown(Tree.java:2007)
at org.eclipse.swt.widgets.Display.windowProc(Display.java:5493)
at org.eclipse.swt.internal.cocoa.OS.objc_msgSendSuper(Native Method)
at org.eclipse.swt.widgets.Widget.callSuper(Widget.java:221)
at org.eclipse.swt.widgets.Widget.windowSendEvent(Widget.java:2102)
at org.eclipse.swt.widgets.Shell.windowSendEvent(Shell.java:2284)
at org.eclipse.swt.widgets.Display.windowProc(Display.java:5557)
at org.eclipse.swt.internal.cocoa.OS.objc_msgSendSuper(Native Method)
at org.eclipse.swt.widgets.Display.applicationSendEvent(Display.java:5002)
at org.eclipse.swt.widgets.Display.applicationProc(Display.java:5151)
at org.eclipse.swt.internal.cocoa.OS.objc_msgSend(Native Method)
at org.eclipse.swt.internal.cocoa.NSApplication.sendEvent(NSApplication.java:128)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3616)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$9.run(PartRenderingEngine.java:1022)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:916)
at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:86)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:585)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:540)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:124)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:353)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:180)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:629)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:584)
at org.eclipse.equinox.launcher.Main.run(Main.java:1438)
Caused by: java.lang.RuntimeException: java.lang.ClassNotFoundException: org.apache.abdera.parser.stax.FOMParser
at org.apache.abdera.util.Discover.getClass(Discover.java:235)
at org.apache.abdera.util.Discover.load(Discover.java:210)
at org.apache.abdera.util.Discover.locate(Discover.java:47)
... 64 more
Caused by: java.lang.ClassNotFoundException: org.apache.abdera.parser.stax.FOMParser
at org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy.loadClass(SelfFirstStrategy.java:50)
at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:244)
at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:230)
at org.apache.abdera.util.Discover.getClass(Discover.java:231)
... 66 more

when DynamicClientFactory with Binding Files creates createClient(), exception occurs

Someone let me know how to create Client object by DynamicClientFactory with Binding files.
this is a sample code i have tested. It occured an exception.
String wsdlURL = "http://localhost/test?wsdl";
ClassLoader loader = Thread.currentThread().getContextClassLoader();
JaxWsDynamicClientFactory factory = JaxWsDynamicClientFactory.newInstance();
List<String> bindingFiles = new ArrayList<String>();
File bindingFile = new File("custom.xml");
try {
bindingFiles.add(bindingFile.getCanonicalPath().toString());
} catch (IoException e) {
e.printStackTrace();
}
Client client = factory.createClient(wsdlURL, loader, bindingFiles);
below is custom.xml.
<bindings xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/"
wsdlLocation="http://localhost/test?wsdl"
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
xmlns:jaxb="http://java.sun.com/xml/ns/jaxb"
xmlns:xjc="http://java.sun.com/xml/ns/jaxb/xjc"
jaxb:version="2.0" jaxb:extensionBindingPrefixes="xjc"
xmlns="http://java.sun.com/xml/ns/jaxws">
<enableWrapperStyle>true</enableWrapperStyle>
<jaxb:globalBindings>
<xjc:simple/>
</jaxb:globalBindings>
</bindings>
when i run above sample code, i got below exception..
java.lang.reflect.UndeclaredThrowableException
at $Proxy18.bind(Unknown Source)
at org.apache.cxf.endpoint.dynamic.DynamicClientFactory.createClient(DynamicClientFactory.java:318)
at org.apache.cxf.endpoint.dynamic.DynamicClientFactory.createClient(DynamicClientFactory.java:252)
at DynamicWebServiceClient_test.test(DynamicWebServiceClient_test.java:93)
at DynamicWebServiceClient_test.main(DynamicWebServiceClient_test.java:54)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.cxf.common.util.ReflectionInvokationHandler.invoke(ReflectionInvokationHandler.java:52)
... 5 more
Caused by: java.lang.reflect.UndeclaredThrowableException
at $Proxy20.fatalError(Unknown Source)
at com.sun.tools.internal.xjc.api.impl.s2j.SchemaCompilerImpl.fatalError(SchemaCompilerImpl.java:279)
at com.sun.tools.internal.xjc.util.ErrorReceiverFilter.fatalError(ErrorReceiverFilter.java:71)
at com.sun.xml.internal.xsom.impl.parser.ParserContext$2.fatalError(ParserContext.java:196)
at com.sun.xml.internal.xsom.impl.parser.NGCCRuntimeEx.unexpectedX(NGCCRuntimeEx.java:484)
at com.sun.xml.internal.xsom.impl.parser.state.NGCCHandler.unexpectedEnterElement(NGCCHandler.java:179)
at com.sun.xml.internal.xsom.impl.parser.state.Schema.enterElement(Schema.java:401)
at com.sun.xml.internal.xsom.impl.parser.state.NGCCRuntime.startElement(NGCCRuntime.java:243)
at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
at com.sun.tools.internal.xjc.util.SubtreeCutter.startElement(SubtreeCutter.java:93)
at com.sun.tools.internal.xjc.reader.ExtensionBindingChecker.startElement(ExtensionBindingChecker.java:133)
at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
at com.sun.tools.internal.xjc.reader.xmlschema.parser.IncorrectNamespaceURIChecker.startElement(IncorrectNamespaceURIChecker.java:102)
at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
at com.sun.tools.internal.xjc.reader.xmlschema.parser.CustomizationContextChecker.startElement(CustomizationContextChecker.java:177)
at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
at com.sun.tools.internal.xjc.reader.internalizer.DOMForestScanner$LocationResolver.startElement(DOMForestScanner.java:130)
at com.sun.xml.internal.bind.unmarshaller.DOMScanner.visit(DOMScanner.java:228)
at com.sun.xml.internal.bind.unmarshaller.DOMScanner.scan(DOMScanner.java:111)
at com.sun.tools.internal.xjc.reader.internalizer.DOMForestScanner.scan(DOMForestScanner.java:78)
at com.sun.tools.internal.xjc.reader.internalizer.DOMForestScanner.scan(DOMForestScanner.java:86)
at com.sun.tools.internal.xjc.reader.internalizer.DOMForestParser.parse(DOMForestParser.java:88)
at com.sun.tools.internal.xjc.ModelLoader$XMLSchemaParser.parse(ModelLoader.java:251)
at com.sun.xml.internal.xsom.impl.parser.NGCCRuntimeEx.parseEntity(NGCCRuntimeEx.java:326)
at com.sun.xml.internal.xsom.impl.parser.ParserContext.parse(ParserContext.java:113)
at com.sun.xml.internal.xsom.parser.XSOMParser.parse(XSOMParser.java:154)
at com.sun.xml.internal.xsom.parser.XSOMParser.parse(XSOMParser.java:143)
at com.sun.tools.internal.xjc.ModelLoader.createXSOM(ModelLoader.java:505)
at com.sun.tools.internal.xjc.api.impl.s2j.SchemaCompilerImpl.bind(SchemaCompilerImpl.java:226)
... 10 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.cxf.common.util.ReflectionInvokationHandler.invoke(ReflectionInvokationHandler.java:52)
... 39 more
Caused by: java.lang.RuntimeException: Fatal error compiling schema from WSDL at {http://localhost/test?wsdl}: Unexpected <jaxws:bindings> appears at line 18 column 62
at org.apache.cxf.endpoint.dynamic.DynamicClientFactory$InnerErrorListener.fatalError(DynamicClientFactory.java:739)
... 44 more
Caused by: org.xml.sax.SAXParseException: Unexpected <jaxws:bindings> appears at line 18 column 62
at com.sun.xml.internal.xsom.impl.parser.NGCCRuntimeEx.unexpectedX(NGCCRuntimeEx.java:477)
... 34 more

add this :
System.setProperty("javax.xml.transform.TransformerFactory",
"org.apache.xalan.processor.TransformerFactoryImpl");
and "(xalan-2.7.1.jar" and serializer-2.7.1.jar") jar