I am writing a python script in Ubuntu 14.04 that imports the menpo.io (API for deformable models) that results in the following error:
Traceback (most recent call last):
File "/home/Dropbox/pyFaceDepression/AAM_Menpo_final.py", line 1, in <module>
import menpo.io as mio
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/__init__.py", line 7, in <module>
import io
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/io/__init__.py", line 1, in <module>
from base import (import_auto, import_image, import_images,
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/io/base.py", line 815, in <module>
from menpo.io.extensions import (mesh_types, all_image_types,
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/io/extensions.py", line 2, in <module>
from menpo.io.landmark import (LM3Importer, LANImporter, LM2Importer,
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/io/landmark.py", line 9, in <module>
from menpo.shape import PointCloud
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/shape/__init__.py", line 2, in <module>
from menpo.shape.mesh import TriMesh, ColouredTriMesh, TexturedTriMesh
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/shape/mesh/__init__.py", line 2, in <module>
from .coloured import ColouredTriMesh
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/shape/mesh/coloured.py", line 3, in <module>
from menpo.rasterize import Rasterizable
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/rasterize/__init__.py", line 2, in <module>
from menpo.rasterize.opengl import GLRasterizer
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/menpo/rasterize/opengl.py", line 2, in <module>
from cyrasterize.base import CyRasterizerBase
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/cyrasterize/__init__.py", line 1, in <module>
from cyrasterize.base import CyRasterizer
File "/home/miniconda/envs/menpo/lib/python2.7/site-packages/cyrasterize/base.py", line 3, in <module>
from cyrasterize.glrasterizer import GLRasterizer
ImportError: libGLEW.so.#glew_version#: cannot open shared object file: No such file or directory
The library I import is called Menpo.io
Any ideas how to fix this ?
I have to apologise, this is actually totally my fault as I was trying to update some of our build scripts and accidentally released a broken build of GLEW. To fix this, you can run:
conda install -c menpo --force glew=1.10.0
Which should download and reinstall GLEW and hopefully fix this problem.
Please reply back if you have any problems at all!
Related
After installation of turicreate, when I am importing it
import turicreate
I am getting the following error:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/papun/anaconda2/lib/python2.7/site-packages/turicreate/__init__.py", line 19, in <module>
from turicreate.data_structures.sgraph import Vertex, Edge
File "/home/papun/anaconda2/lib/python2.7/site-packages/turicreate/data_structures/__init__.py", line 18, in <module>
from . import sframe
File "/home/papun/anaconda2/lib/python2.7/site-packages/turicreate/data_structures/sframe.py", line 16, in <module>
from ..connect import main as glconnect
File "/home/papun/anaconda2/lib/python2.7/site-packages/turicreate/connect/main.py", line 13, in <module>
from ..cython.cy_unity import UnityGlobalProxy
ImportError: libblas.so.3: cannot open shared object file: No such file or directory
It will helpful, if I can get a suggestion on this. I have also tried
re installing scipy.
You need to install Blas.
Follow instruction details in this blog: libblas and liblapack issues and speed, with SciPy and Ubuntu
I am very new to tensorflow, struggling on its installation. I use ubuntu 16.04. I obviously installed the Nvidia dependencies.
Whenever I type in:
import tensorflow as tf
I get:
File "/usr/lib/python2.7/dist-packages/spyderlib/widgets/externalshell/sitecustomize.py", line 699, in runfile
execfile(filename, namespace)
File "/usr/lib/python2.7/dist-packages/spyderlib/widgets/externalshell/sitecustomize.py", line 81, in execfile
builtins.execfile(filename, *where)
File "/media/as/KINGSTON/SIEC NEURONOWA/NETWORK.py", line 3, in <module>
from keras.models import Sequential
File "/usr/local/lib/python2.7/dist-packages/keras/__init__.py", line 3, in <module>
from . import activations
File "/usr/local/lib/python2.7/dist-packages/keras/activations.py", line 4, in <module>
from . import backend as K
File "/usr/local/lib/python2.7/dist-packages/keras/backend/__init__.py", line 73, in <module>
from .tensorflow_backend import *
File "/usr/local/lib/python2.7/dist-packages/keras/backend/tensorflow_backend.py", line 1, in <module>
import tensorflow as tf
File "/home/as/.local/lib/python2.7/site-packages/tensorflow/__init__.py", line 24, in <module>
from tensorflow.python import *
File "/home/as/.local/lib/python2.7/site-packages/tensorflow/python/__init__.py", line 51, in <module>
from tensorflow.python import pywrap_tensorflow
File "/home/as/.local/lib/python2.7/site-packages/tensorflow/python/pywrap_tensorflow.py", line 52, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/home/as/.local/lib/python2.7/site-packages/tensorflow/python/pywrap_tensorflow.py", line 41, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/home/as/.local/lib/python2.7/site-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/home/as/.local/lib/python2.7/site-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
ImportError: libcublas.so.8.0: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/install_sources#common_installation_problems
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
I tried many solutions, but the effect remains the same. Many thanks for help!
I had this same problem when installing gputools in R. After hundreds of tries, the command which worked for me is:
sudo ln -s /usr/local/cuda/lib64/libcublas.so.8.0 /usr/lib/libcublas.so.8.0
OR
sudo ln -s /usr/local/cuda-8.0/lib64/libcublas.so.8.0 /usr/lib/libcublas.so.8.0
Not able to solve.Kindly clarify.
I had installed georasters then it gave error with numpy ,now numpy is solved it is giving error with fiona.
Traceback (most recent call last):
File "<pyshell#0>", line 1, in <module>
import georasters
File "D:\Python\lib\site-packages\georasters\__init__.py", line 3, in <module>
from .georasters import get_geo_info, map_pixel, map_pixel_inv, aggregate, create_geotiff, align_rasters, \
File "D:\Python\lib\site-packages\georasters\georasters.py", line 38, in <module>
from fiona.crs import from_string
File "D:\Python\lib\site-packages\fiona\__init__.py", line 77, in <module>
from fiona.collection import Collection, BytesCollection, vsi_path
File "D:\Python\lib\site-packages\fiona\collection.py", line 7, in <module>
from fiona.ogrext import Iterator, ItemsIterator, KeysIterator
ImportError: DLL load failed: The specified module could not be found.
Having same issue.
Just install fiona and geopandas.
pip install fiona geopandas
So I without thinking stupidly named a file io.py in my working directory. When I tried to compile I got a traceback error. Having realised what I'd done I renamed my file and updated references to it but I still get the following error:
Traceback (most recent call last):
File "C:\Users\Tom\workspace\Converter\get_file.py", line 9, in <module>
from scipy import complex_
File "C:\Python27\lib\site-packages\scipy\__init__.py", line 70, in <module>
from numpy import show_config as show_numpy_config
File "C:\Python27\lib\site-packages\numpy\__init__.py", line 185, in <module>
from . import add_newdocs
File "C:\Python27\lib\site-packages\numpy\add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "C:\Python27\lib\site-packages\numpy\lib\__init__.py", line 8, in <module>
from .type_check import *
File "C:\Python27\lib\site-packages\numpy\lib\type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "C:\Python27\lib\site-packages\numpy\core\__init__.py", line 46, in <module>
from numpy.testing import Tester
File "C:\Python27\lib\site-packages\numpy\testing\__init__.py", line 13, in <module>
from .utils import *
File "C:\Python27\lib\site-packages\numpy\testing\utils.py", line 15, in <module>
from tempfile import mkdtemp
File "C:\Python27\lib\tempfile.py", line 32, in <module>
import io as _io
File "C:\Users\Tom\workspace\Converter\io.py", line 1, in <module>
"""The io module provides the Python interfaces to stream handling. The
File "C:\Users\Tom\workspace\Converter\get_file.py", line 9, in <module>
from scipy import complex_
ImportError: cannot import name complex_
I have restarted PyDev to no avail. I have refreshed the interpreter to no avail.
I have followed the instructions found in this Python issue but that command returns the correct result on my machine.
Is tempfile.py a temporary file I can remove to resolve this issue?
I have found the solution. Stupidly simple but maybe worth leaving here for other newbies who fall into the same trap.
PyDev compiles the code into *.pyc files. When you update the references and rename the files these aren't immediately recompiled. Deleting the io.pyc file I had allowed compilation too run properly.
I found some more info on common pitfalls too.
I am trying to create an exe file for a python file. py2exe creates the executable, but when I run the executable, I get the following traceback:
C:\Users\gkumar7\Desktop\AL_gui-master\AL_gui-master\dist>app.exe
Traceback (most recent call last):
File "app.py", line 5, in <module>
File "learning_curve.pyc", line 13, in <module>
File "sklearn\metrics\__init__.pyc", line 34, in <module>
File "sklearn\metrics\scorer.pyc", line 30, in <module>
File "sklearn\metrics\cluster\__init__.pyc", line 8, in <module>
File "sklearn\metrics\cluster\supervised.pyc", line 18, in <module>
File "sklearn\metrics\cluster\expected_mutual_info_fast.pyc", line 12, in <mod
ule>
File "sklearn\metrics\cluster\expected_mutual_info_fast.pyc", line 10, in __lo
ad
File "expected_mutual_info_fast.pyx", line 1, in init sklearn.metrics.cluster.
expected_mutual_info_fast (sklearn\metrics\cluster\expected_mutual_info_fast.c:5
007)
ImportError: No module named lgamma
Here is my setup.py file:
dll_excludes = ['MSVCP90.dll', 'OLEAUT32.dll', 'USER32.dll', 'IMM32.dll', 'SHELL32.dll',
'ole32.dll', 'COMDLG32.dll', 'COMCTL32.dll', 'ADVAPI32.dll', 'mfc90.dll', 'msvcrt.dll',
'WS2_32.dll', 'WINSPOOL.DRV', 'GDI32.dll', 'VERSION.dll', 'KERNEL32.dll', 'ntdll.dll']
from distutils.core import setup
import py2exe, matplotlib, numpy
setup(console=['app.py'],
data_files=matplotlib.get_py2exe_datafiles(),
options = {"py2exe": {
"dll_excludes": dll_excludes,
"includes": ['scipy.sparse.csgraph._validation',
'scipy.special._ufuncs_cxx']
}
}, )
I have also tried cx_freeze, but kept receiving similar errors. Any help would be much appreciated.
Include sklearn.utils.lgamma in your py2exe setup file.