I'm trying implement a small program to do blast and obtain result without browsers.
The ncbi c++ toolkit seems like what I'm looking for, however, I met some problem of using it.
My environment is windows with MSVC 2010 c++ compiler and QT framework,
I've download, configure, and build the toolkit according to the following instruction.
http://www.ncbi.nlm.nih.gov/books/NBK7167/
and I have all libs (.*lib files) at the directory below:
ncbi_cxx--12_0_0\compilers\msvc1000_prj\dll\lib\ReleaseDLL
Following is an example provided by ncbi, I'm trying to do similar stuff.
http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/sample/app/blast/remote_blast_demo.cpp
After everything seems ready, I create a project (with Qt Creator) and try to use the toolkit.
However, the problem occurs when I include any of the header files, for example
#include <corelib/ncbiapp.hpp>
I have no clue how to solve the compiler error when including ncbi libraries.The error message is as follows:
'ncbi::CUtf8::AsUTF8' redefinition of
default parameter : parameter 2 (ncbistr.hpp line 2861)
'ncbi::CStringUTF8 ncbi::CUtf8::AsUTF8(const ncbi::TCharUCS2*,ncbi::SIZE_TYPE)' : member function already defined or declared (ncbistr.hpp line 2861)
'ncbi::CUtf8::AsUTF8' : missing default parameter for parameter 2 (ncbistr.hpp line 2861)
I spent days on figuring how to use this toolkit, if anyone can give me some idea, I'll really appreciate.
By the way, in the project file I do include path and libs.
INCLUDEPATH += "../../lib/ncbi_cxx--12_0_0/include"
LIBS += "../../lib/ncbi_cxx--12_0_0/compilers/msvc1000_prj/dll/lib/ReleaseDLL/*.lib"
Related
Trying to build Tink library (https://github.com/google/tink) with Bazel. Bazel installed, gcc version 7.2.0, Windows 10 x64. Visual C++ 2017.
At first, there were errors like "C++ compilation of rule '#boringssl//:crypto' failed" - I commented these lines (with compilation flags I think) in boringssl/BUILD file (sections boringssl_copts, boringssl_copts_c11) and they disappeared.
But after that, bazel said, that error is in errors.h file (https://github.com/google/tink/blob/master/cc/util/errors.h)
// from #include "absl/base/port.h"
#define PRINTF_ATTRIBUTE(string_index, first_to_check) \
__attribute__((__format__ (__printf__, string_index, first_to_check)))
// Constructs a Status object given a printf-style va list.
crypto::tink::util::Status ToStatusF(
crypto::tink::util::error::Code code, const char* format, ...)
PRINTF_ATTRIBUTE(2, 3);
} // namespace tink
} // namespace crypto
enter code here
Error C3646: unknown override specifier on line 32 (line with "PRINTF_ATTRIBUTE(2, 3);"). The most frightening thing is that in another files the same code (defining same attribute) is working.
There are another errors in this file, but mentioned is the first (and another are about the same line, so they are consequences of the first I guess).
I'm nearly a total newbie in cpp, but only cpp should be used, not java-version of library.
Thank you for your help, and sorry for possible misformatting and broken english - this is my first question here.
Unfortunately, we don't support Windows for now. It's something that we plan to support next year, please see our feature roadmap.
I'm fairly new to Xcode and have recently gotten an error message that is probably clear to anyone who knows what they're doing, but I am unsure how to react to this one.
I have a project that is mostly C++, with just a few C files in it. Everything was fine until I tried to add some code to find the computer's MAC address. Apple provides a project example (GetPrimaryMACAddress), and I downloaded, built, and tested that. It works just fine.
After that, I simply copied the C source from the Apple example project and included it into my code project. Then I started getting this error message:
I have tried including the IOKit framework explicitly via the linker; no help. I tried adding more #include statement to the Apple example code; no help. I think that I do not understand what the compiler message is telling me regarding importing from module 'Darwin.MacTypes'.
Clicking on the error message took me to a line in usr/include/MacTypes.h:
I'm not clear on how to Import Darwin.MacTypes. I don't really understand how the source code for GetMACAddress could compile so effortlessly in one project and not another. I didn't rearrange nor add nor delete any of the #include statements in the Apple-supplied C file.
I'll bet there is a simple answer that I am just not seeing. How should I react to this error message?
I had a similar problem with types like UInt16 and UInt32. I just included the MacTypes with the following include statement:
#include <MacTypes.h>
This solved all my type-problems for my example c-file.
Let me guess, when you want to compile C++ source, you should create a C++ source file
(On the toolbar: File > New > File.. > Source > C++ File)
I built Qt from source (dlls) and am trying to build an application that uses the Qt dlls. I don't have a lot of experience with C++ so I'm running into what I'm sure is a very basic issue.
My builds are failing on the includes with errors like so:
Fatal error: QNetworkProxy: No such file or directory
Here is the g++ command I am using (I also used -L to add the correct folder to the lib path, but that also didn't work):
g++ -l..\..\wkqt\bin\QtCore4.dll -l..\..\wkqt\bin\QtNetwork4.dll -l..\..\wkqt\bin\QtWebKit4.dll -I..\include -Ishared -Ipdf -Ilib -Iimage -o ..\bin\wkhtmltopdf.exe pdf\*.cc lib\*.cc image\*.cc shared\*.cc
I tried in Visual Studio as well (assuming it wouldn't build, but I wanted to see if I could at least include the Qt dlls from there properly) and I am getting the same errors. Am I doing something wrong with the way I am compiling with g++? If I am linking with the Dlls properly then what is the proper way to use Qt functions from my code?
To clarify, I am not looking for how to properly use Qt. My question is: what is the proper way to use functions defined in any Dll from native C++ code? I apologize if this is a very basic question, but I'm unable to find a clear answer on Google and I don't have any experience with C++ and including third party libraries for use from C++ code.
DLLs can be used by dynamicly loading them and calling their used functions.
to call the exposed functions first define their syntax in the begining
suppose function is syntax is
BOOL MyFunction(int a,char* pszString)
then define syntax
#typedef BOOL (WINAPI *PMYFUNCTION)(int a,char* pszString)
then make object
PMYFUNCTION pfnMyFunction;
and get valid pointer by calling GetProcaddress after loadlibrarycall
HMODULE hlib= Loadlibrary("c:\\Mylib.dll");
if(hlib)
{ pfnMyFunction = (PMYFUNCTION)Getprocaddress(hlib,"MyFunction"); }
Hope this helps...
I'm trying to use vtk in my code, but I'm having problems running an example. I have almost no clue about the reasons since it's the first time I'm using it and I'm not very experienced.
I'm using visual studio 2012 and x64 platform.
Since I don't really know which libs should I use I added all of them to the "Additional Dependencies".
The example is given in this link.
The problem is that when I run it, the window shows this message
Generic Warning: In C:\location\VTK6.0.0\Rendering\Core\vtkPolyDataMapper.cxx, line 27
Error: no override found for 'vtkPolyDataMapper'.
which corresponds to this line
// Return NULL if no override is supplied.
vtkAbstractObjectFactoryNewMacro(vtkPolyDataMapper)
And the error that visual studio shows is
First-chance exception at 0x000007F7AA106C8F in Test.exe: 0xC0000005: Access violation reading location 0x0000000000000000.
Does anyone know how to solve this problem or at least what does this error mean?
I too was getting this error. The error means that the linker can't find the definition for the vtkPolyDataMapper method. One has to note which vtk rendering backend they used, during build. It will probably be either vtkRenderingOpenGL, or vtkRenderingOpenGL2. Go to your build/lib folder and search for either one of these. I have VS 2015 Community and had the vtkRenderingOpenGL2, with vtk-7.1 built on Windows 8.1, x86_64 Platform, Release configuration.
I fixed the issue by inserting the 3 following lines at the very top of my source files, before any other preprocessor directives:
#include "vtkAutoInit.h"
VTK_MODULE_INIT(vtkRenderingOpenGL2); // VTK was built with vtkRenderingOpenGL2
VTK_MODULE_INIT(vtkInteractionStyle);
This initializes the specified VTK modules. CMake includes these by default, but other compilers such as VS do not.
The last two lines can be combined into the following:
#define vtkRenderingCore_AUTOINIT 2(vtkRenderingOpenGL2, vtkInteractionStyle)
According to the VTK migration guide, if you are not using CMake to compile your code, you need to add some #defines. For VTK 6.0, these lines need to go before any other VTK #includes:
#define vtkRenderingCore_AUTOINIT 4(vtkInteractionStyle,vtkRenderingFreeType,vtkRenderingFreeTypeOpenGL,vtkRenderingOpenGL)
#define vtkRenderingVolume_AUTOINIT 1(vtkRenderingVolumeOpenGL)
You are missing include(${VTK_USE_FILE}) in your CMakeLists.txt file.
Assuming your are using OpenGL2, you should initialise the vtkRenderingOpenGL2 module, ensuring its object factory is correctly registered:
VTK_MODULE_INIT(vtkRenderingOpenGL2)
You should call this macro in the global scope (ex. main.cpp) as documented in the source code:
Initialize the named module, ensuring its object factory
is correctly registered and unregistered. This call must be made in
global scope in the translation unit of your executable (which can
include a shared library, but will not work as expected in a static
library).
#include "vtkAutoInit.h"
VTK_MODULE_INIT(vtkRenderingOpenGL);
The above snippet if included in the global scope will ensure the
object factories for vtkRenderingOpenGL are correctly registered and
unregistered.
How do you know which module to include?
The easiest method is to search in the VTK build folder for "vtkClassThatNeedsAnOverride", i.e. "vtkPolyDataMapper" in your case (note the use of quotes ".) and looking for a *ObjectFactory in your search results:
Rendering/OpenGL2/vtkRenderingOpenGL2ObjectFactory.cxx:
this->RegisterOverride("vtkPolyDataMapper",
"vtkOpenGLPolyDataMapper",
"Override for vtkRenderingOpenGL2 module", 1,
vtkObjectFactoryCreatevtkOpenGLPolyDataMapper);
It may be even more beneficial to look for RegisterOverride("vtkPolyDataMapper".
Which object factories exist?
To obtain a list of all existing modules that you could initialise, you can search for _AutoInit_Construct. *_AutoInit_Construct is the method that is called by VTK_MODULE_INIT.
As an alternative, you can look at all classes that derive from vtkObjectFactory.
A second alternative is to look for all calls to RegisterOverride.
Further information
VTK 6 Migration: Factories now require defines
Build System Migration: You do not need to call VTK_MODULE_INIT manually using cmake by calling include(${VTK_USE_FILE}) in your CMakeLists.txt
Note that I originally wrote this answer for a duplicate question, but I think the general information about solving this problem may be of interest for other people with the same error message.
I would recommend following the guide here, with the VTK_MODULE_INIT macro being the most reliable, with the guide here providing a high level overview of the changes needed. You must link to vtkRenderingOpenGL for example to get most of the standard overrides. If you use CMake then specifying it on the COMPONENTS argument to find_package would cause it to be added to VTK_LIBRARIES, and including VTK_USE_FILE would cause the correct compiler definitions to be added.
I had the same issue at my platform;
Visual Studio 2015
Windows 7
VTK 6.3
I followed VTK/Build System Migration from Marcus D. Hanwell's post, and it works. My additonal lines are;
#include <vtkAutoInit.h>
VTK_MODULE_INIT(vtkRenderingOpenGL);
VTK_MODULE_INIT(vtkInteractionStyle);
on the top of preprocessor. The difference from RestlessC0bra's post is probably OpenGL version.
When using ParaView's Catalyst libraries you have to add the following in addition to include("${PARAVIEW_USE_FILE}"):
set_property(DIRECTORY APPEND PROPERTY COMPILE_DEFINITIONS ${VTK_DEFINITIONS})
A quick hack solution: In CMakeList.txt file, replace vtkRendering${VTK_RENDERING_BACKEND} with vtkRenderingOpenGL2. The reason why we need this is because Cmake does not know where the rendering core is. By specifying it, we can use the rendering core to override the proper method.
The proper solution should be replace the whole find_package paragraph with:
find_package(VTK REQUIRED COMPONENTS vtkCommonCore)
find_package(VTK COMPONENTS
vtkFiltersSources
vtkInteractionStyle
vtkRendering${VTK_RENDERING_BACKEND})
The first find_package lets the CMake know where to find the packages, then second find_package would know where to find vtkRendering${VTK_RENDERING_BACKEND}.
I've build intel's tbb, and in my qt pro file I've included following line:
INCLUDEPATH += "C:\\Downloads\\libraries\\tbb40_297oss\\include"
but when I try to compile my project I'm getting an error:
c:\Downloads\libraries\tbb40_297oss\include\tbb\internal\..\tbb_exception.h:340: error: 'exception_ptr' in namespace 'std' does not name a type
Is there anything else I'm supposed to do? I cannot find any .lib files anywhere.
It is because you don't have _GLIBCXX_ATOMIC_BUILTINS_N (N = 1,2,4,8) defined in bits/c++config.h
Well this was my problem. It turned out that my MingW was not installed properly because of a configuration issue.
When I was dealing with that I had spent too much time with those types of shit and it was very very late at night. I had got sick and defined those macros myself.
TBB compiles and runs without problems since that day.