Regex across multiple lines - regex

I was able to successfully extract everything with your suggestions. My issue came as expected, with the regex not properly recognizing something... thanks so much!! Here is my end code... hope it helps someone!
if($_=~/(Research Interests)/){
$research = "Research Interest";
if($_=~m/<h2>Research Interests<\/h2>(.*?)<p>(.*?)<\/p>/gs){
#researchInterests = split(/,+/, $2);
$count = 1;
foreach(#researchInterests){
print "$research $count:";
print $_. "\n";
$count++;
}
}
}

The problem is that you've only read in one line at a time. Why don't you read in the entire file and match against that.
my $file;
{
local $/;
$file = <FILE>;
}

You can simply go get more lines at that point:
while (<FILE>) {
if (m/Research Interests/) {
while (<FILE>) {
if (m/<p>(.*)<p>/) {
print "Research Interests: $1";
last;
}
}
}
}
I don't know whether your file is huge or not, but it's worth learning techniques that don't require reading the whole file at once so that you can deal with arbitrarily large files, or with streams.

If you absolutely have to do this, you could try setting the newline separator to undef:
#!/usr/bin/perl
use warnings;
use strict;
my $infile = 'in.txt';
open my $input, '<', $infile or die "Can't open to $infile: $!";
my $reserch_interests;
$/=undef;
while(<$input>){
if($_ =~ /(Research Interests)/){
$reserch_interests = $1;
if($_=~ m/<p>(.*)<\/p>/){
print "Title: $reserch_interests\nInterests: $1\n";
}
}
}
Prints:
Title: Research Interests
Interests: Data mining, databases, information retrieval

Related

Check if multiple lines exist in text file

Using Perl I would like to check if the two lines highlighted below exist in a text file . Each line is preceded by a tab.
CF=CFU-ALL-PROV-NONE-YES-NO-NONE-YES;
CF=CFB-ALL-PROV-NONE-YES-YES-NONE-YES;
***CF=CFU-TS10-ACT-NONE-YES-NO-NONE-YES;***
CF=CFNRY-ALL-PROV-NONE-YES-YES-NONE-YES;
CF=CFNRC-ALL-PROV-NONE-YES-NO-NONE-YES;
***CF=CFB-TS10-ACT-NONE-YES-NO-NONE-YES;***
CF=CFD-TS10-REG-9124445544-YES-YES;
I am using the following if statement but it is not matched
if (/\t*CF=(CFU-TS10-ACT-(NONE|\d+))/ && /\t*CF=(CFB-TS10-ACT-(NONE|\d+))/)
{
say "this case is found here .....";
}
What am I doing wrong ?
Edited
This is the program I wrote :-
#!/usr/bin/perl
use strict;
use warnings;
use feature 'say';
my $HSSIN='D:\testproject\HSS-export-test-run-small.txt';
my $ofile = 'D:\testproject\HSS-output.txt';
open (INFILE, $HSSIN) or die "Can't open input file";
open (OUTFILE,"> $ofile" ) or die "Cant open file";
my $add;
my $MSISDN;
my $line;
sub callForwardingsCF()
{
if (/\t*CF=(CFU-TS10-ACT-(NONE|\d+))/ && /\t*CF=(CFB-TS10-ACT-(NONE|+\d+))/)
{
say "this case is found here .....";
}
} # end sub callForwardingsCFD
while (<INFILE>)
{
if (/<SUBEND/)
{
say "SUBEND found";
#$line = $1 if /^\s*MSISDN=(\d+);/;
print OUTFILE "processSingle UpdateCommand GSUB MKEY $line";
print OUTFILE "\n";
}
if ($_ =~ /^\t*MSISDN=(\d+);/)
{ #find MSISDN in file global search
say "STARTER MSISDN is $1";
$MSISDN = $1;
$add = $1;
$line = "$1"; #group 1
}
callForwardingsCF(); #callForwardings
}
close INFILE;
close OUTFILE;
Example of a record in the input file
<BEGINFILE>
<SUBBEGIN
IMSI=232191400029053;
MSISDN=4369050064401;
DEFCALL=TS11;
CURRENTNAM=BOTH;
CAT=COMMON;
TBS=TS11&TS12&TS21&TS22;
VLRLIST=10;
SGSNLIST=10;
SMDP=MSC;
CB=BAOC-ALL-PROV;
CB=BOIC-ALL-PROV;
CB=BOICEXHC-ALL-PROV;
CB=BICROAM-ALL-PROV;
CW=CW-ALL-PROV;
CF=CFU-ALL-PROV-NONE-YES-NO-NONE-YES-65535-NO-NO-NO-NO-NO-NO-NO-NO-NO-NO;
CF=CFB-ALL-PROV-NONE-YES-YES-NONE-YES-65535-NO-NO-NO-NO-NO-NO-NO-NO-NO-NO;
CF=CFU-TS10-ACT-NONE-YES-NO-NONE-YES-65535-YES-YES-NO-NO-NO-NO-NO-NO-NO-NO;
CF=CFNRY-ALL-PROV-NONE-YES-YES-NONE-YES-65535-NO-NO-NO-NO-NO-NO-NO-NO-NO-NO;
CF=CFNRC-ALL-PROV-NONE-YES-NO-NONE-YES-65535-NO-NO-NO-NO-NO-NO-NO-NO-NO-NO;
CF=CFB-TS10-ACT-NONE-YES-NO-NONE-YES-65535-YES-YES-NO-NO-NO-NO-NO-NO-NO-NO;
CF=CFD-TS10-REG-91436903000-YES-YES-25-YES-65535-YES-YES-NO-NO-NO-YES-YES-YES-YES-NO;
TCSISTATE=YES;
OCSISTATE=YES;
CONTROL=SUB;
WPA=0;
GS=HOLD&MPTY&ECT&CLIR&CLIP;
CLIRES=TEMPALLOW;
CLIPOC=NO;
OCSI=10;
CFSMS=ACT-10-914366488325207-YES-YES-NO-NO-NO;
ARD=PROV;
SUBRES=ALLPLMN;
IST_ALERT_TIMER=120;
IST_ALERT_RESPONSE=2;
SUB_AGE=0;
MIMSI=240076400029053-ONELIVE-2-2-1-0-0;
MIMSI=232191400029053-ONELIVE-1-1-1-0-0;
SID=2805158185721065;
MCSISTATE=YES;
CLRBSG=CLIP-YES-NO-NO-NO-NO;
UPLCSLCK=NO;
UPLPSLCK=NO;
DEFOFAID=10;
EPS_PROFILE_ID=1;
TGPPAMBRMAXUL=50000000;
TGPPAMBRMAXDL=150000000;
ARD_EXT=NULL-NULL-NULL-N3GPPNOTALLOWED;
FRAUDTPL_ID=10;
HLR_INDEX=1;
LTEAUTOPROV=NO;
PSSER=1-1-10-1-NONE-DYNAMIC-00000000;
EPSSER=1-10-10-1-NONE-DYNAMIC-00000000-1;
MPS=NO;
<SUBEND
Thanks,
Graham
Per default regexes match linewise.
So if you were trying to match an input that contains multiple lines, you would have to use one of the modifiers that allows the regex to match the entire string.
See the the perl regex documentation - the chapter "Modifiers".
Then you should add the s modifiler and change your if statement to:
if ( /\t*CF=(CFB-TS10-ACT-(NONE|\d+))/s &&
/\t*CF=(CFU-TS10-ACT-(NONE|\d+))/s ) {
say "found";
}
If you read linewise you will never have both of your regexes match for the same line, so you would need to do your regexes seperately as already suggested by the other answer.
#$/ = ""; #without paragraph mode
open my $file, '<', 'data_file';
binmode $file;
while(<$file>){
print $_ if ( $_ =~ /\s+CF=CFU-TS10-ACT-NONE-YES-NO-NONE-YES-\d+-YES-YES-NO-NO-NO-NO-NO-NO-NO-NO;/ ||
$_ =~ /\s+CF=CFB-TS10-ACT-NONE-YES-NO-NONE-YES-\d+-YES-YES-NO-NO-NO-NO-NO-NO-NO-NO;/ );
}
EDIT:
OR, you can do it in paragraph mode if conditions allow it.
$/ = "";
open my $file, '<', 'data_file';
binmode $file;
while(<$file>){
(undef, $first) = split (/\s+(CF=CFU-TS10-ACT-NONE-YES-NO-NONE-YES-\d+-YES-YES-NO-NO-NO-NO-NO-NO-NO-NO;)/, $_);
(undef, $second) = split(/\s+(CF=CFB-TS10-ACT-NONE-YES-NO-NONE-YES-\d+-YES-YES-NO-NO-NO-NO-NO-NO-NO-NO;)/, $_ );
print $first . "\n" . $second;
}
Code is tested and seems to work fine with supplied data.
Also, those are not tabs "\t" ... those are spaces "\s+" preceding those lines. Best thing is to learn your data set before you try to parse it ;)
Typically perl processes file "line by line".
Try something like sample script below:
my($line1,$line2);
while(<STDIN>) {
$line1=$_ if /\t*CF=(CFU-TS10-ACT-(NONE|\d+))/
$line2=$_ if /\t*CF=(CFB-TS10-ACT-(NONE|\d+))/
if( $line1 and $line2 ) {
say "this case is found here .....";
last; # skip processing remaning lines
}
}
Alternatively you may "slurp" whole file into one scalar variable.

Perl reading in a file and getting a string in between two strings

I am trying to read in a file and gather everything in between two hash keys. I want to access everything between the $beginString and $endString variables. I have tried multiple regular expressions but haven't been able to get one to work.
my $beginString = "SEARCH";
my $endString = "TEST";
my $fileContent;
open(my $fileHandler, $inputFile) or die "Could not open file '$inputFile' $!";
{
local $/;
$fileContent = <$fileHandler>;
}
close($fileHandler);
if($fileContent =~ /\b$beginString\b(.*?)\b$endString\b/){
my $result = $1;
print $result;
}
print Dumper($fileContent);
An adaptation of the perl monks' solution could be..
my $beginString = "SEARCH";
my $endString = "TEST";
my $fileContent;
open(my $fileHandler, $inputFile) or die "Could not open file '$inputFile' $!";
while(<$fileHandler>) {
if(/$beginString/../$endString/) { $fileContent .= $_ unless(/$beginString/ or /$endString/) }
}
close($fileHandler);
print Dumper($fileContent);

Pull regular expressions from file and compare to each line in a file

I found something that I could use on perlmonks.org (http://www.perlmonks.org/?node_id=870806) but I can't get it to work.
I can read the file without issue and build an array. Then, I'd like to compare each index of the array (each regex) to each line of a file, printing out the line before and the line after the matched line.
My code:
# List of regex's. If this file doesn't exist, we can't continue
open ( $fh, "<", $DEF_FILE ) || die ("Can't open regex file: $DEF_FILE");
while (<$fh>) {
chomp;
push (#bad_strings, $_);
}
close $fh || die "Cannot close regex file: $DEF_FILE: $!";
$file = '/tmp/mydirectory/myfile.txt';
eval { open ( $fh, "<", $file ); };
if ($#) {
# If there was an error opening the file, just move on
print "Error opening file: $file.\n";
} else {
# If no error, process the file
foreach $bad_string (#bad_strings) {
$this_line = "";
$do_next = 0;
seek($fh, 0, 0); # move pointer to 0 each time through
while(<$fh>) {
$last_line = $this_line;
$this_line = $_;
my $rege = eval "sub{ \$_[0] =~ $bad_string }"; # Real-time regex
if ($rege->( $this_line )) { # Line 82
print $last_line unless $do_next;
print $this_line;
$do_next = 1;
} else {
print $this_line if $do_next;
$last_line = "";
$do_next = 0;
}
}
}
} # End "if error opening file" check
This was working before when I had just a string per line in the file and performed a simple test such as if ($this_line =~ /$string_to_search_for/i ) but when I switched to regex in the file and a "real-time" eval statement, I now get Can't use string ("") as a subroutine ref while "strict refs" in use at scrub_file.pl line 82 and line 82 is if ($rege->($this_line)) {.
Prior to that error message, I'm receiving: Use of uninitialized value in subroutine entry at scrub_hhsysdump_file.pl line 82, <$fh> I have some understanding of that error message but can't seem to make the perl engine happy with my code thus far.
Still new to perl and always looking for pointers. Thanks in advance.
I fail to see the reason for those eval statements - all they seem to do is make the code a lot more complicated and difficult to debug.
But $rege is undef because eval "sub{ \$_[0] =~ $bad_string }" isn't working, due to the string having a syntax error. I don't know what's in $DEF_FILE, but unless it has properly-delimited regular expressions then you need to add the delimiters in the eval string.
my $rege = eval "sub{ \$_[0] =~ /$bad_string/ }"
may work, but you may need /\Q$bad_string/ instead if the strings in $DEF_FILE contain regex metacharacters and you want them to be treated as literal characters.
I suggest this version of your program which seems to do what you need without the fuss of the eval calls.
use strict;
use warnings;
use Fcntl ':seek';
my $DEF_FILE = 'myfile';
my #bad_strings = do {
open my $fh, '<', $DEF_FILE or die qq(Can't open regex file "$DEF_FILE": $!);
<$fh>;
};
chomp #bad_strings;
my $file = '/tmp/mydirectory/myfile.txt';
open my $fh, '<', $file or die qq(Unable to open "$file" for input: $!);
for my $bad_string (#bad_strings) {
my $regex = qr/$bad_string/;
my ($last_line, $this_line, $do_next) = ('', '', 0);
seek $fh, 0, SEEK_SET;
while (<$fh>) {
($last_line, $this_line) = ($this_line, $_);
if ($this_line =~ $regex) {
print $last_line unless $do_next;
print $this_line;
$do_next = 1;
}
else {
print $this_line if $do_next;
$do_next = 0;
}
}
}

Removing stop words and saving the new file Perl

I have created a Perl file to load in an array of "Stop words".
Then I load in a directory with ".ner" files contained in it.
Each file gets opened and each word is split and compared to the words in the stop file.
If the word matches the word it is changed to "" (nothing-and gets removed)
I then copy the file to another location. So I can differentiate between files with stop words and files without.
But does this change the file to now contain no stop words or will it revert back to the original?
#!/usr/bin/perl
#use strict;
#use warnings;
my #stops;
my #file;
use File::Copy;
open( STOPWORD, "/Users/jen/stopWordList.txt" ) or die "Can't Open: $!\n";
#stops = <STOPWORD>;
while (<STOPWORD>) #read each line into $_
{
chomp #stops; # Remove newline from $_
push #stops, $_; # add the line to #triggers
}
close STOPWORD;
$dirtoget="/Users/jen/temp/";
opendir(IMD, $dirtoget) || die("Cannot open directory");
#thefiles= readdir(IMD);
foreach $f (#thefiles){
if ($f =~ m/\.ner$/){
print $f,"\n";
open (FILE, "/Users/jen/temp/$f")or die"Cannot open FILE";
if ( FILE eq "" ) {
close FILE;
}
else{
while (<FILE>) {
foreach $word(split(/\|/)){
foreach $x (#stops) {
if ($x =~ m/\b\Q$word\E\b/) {
$word = '';
copy("/Users/jen/temp/$f","/Users/jen/correct/$f")or die "Copy failed: $!";
close FILE;
}
}
}
}
}
}
}
closedir(IMD);
exit 0;
The format of the file I am splitting and comparing is as follows:
'<title>|NN|O Woman|NNP|O jumped|VBD|O for|IN|O life|NN|O after|IN|O firebomb|NN|O attack|NN|O -|:|O National|NNP|I-ORG News|NNP|I-ORG ,|,|I-ORG Frontpage|NNP|I-ORG -|:|I-ORG Independent.ie</title>|NNP|'
Should I be outlining where the words should be split ie: split(/|/)?
You should ALWAYS use :
use strict;
use warnings;
use three args open and test opening for failure.
As said codaddict A split with no arguments is equivalent to split(' ', $_).
Here is a proposal to achieve the job (as far as I well understood what you wanted).
#!/usr/bin/perl
use strict;
use warnings;
use 5.10.1;
my #stops = qw(put here your stop words);
my %stops = map{$_ => 1} #stops;
my #thefiles;
my $path = '/Users/jen/temp/';
my $out = $path.'outputfile';
open my $fout, '>', $out or die "can't open '$out' for writing : $!";
foreach my $file(#thefiles) {
next unless $file =~ /\.ner$/;
open my $fh, '<', $path.$file or die "can't open '$file' for reading : $!";
my #lines = <$file>;
close $fh;
foreach my $line(#lines) {
my #words = split/\|/,$line;
foreach my $word(#words) {
$word = '' if exists $stops{$word};
}
print $fout join '|',#words;
}
}
close $out;
A split with no arguments is equivalent to split(' ', $_).
Since you want the lines to be split on | you need to do:
split/\|/
#jenniem001,
open FILE, ("<$fh")||die("cant");undef $/;my $whole_file = <FILE>;foreach my $word (#words){$whole_file=~s/\b\Q$word\E\b//ig;}open FILE (">>$duplicate")||die("cant");print FILE $whole_file;
That will remove stops from your file and create a duplicate. Just call give $duplicate a name :)

What is the actual Perl code that will mimic -pi inside the program?

This seems redundant, running perl from a Perl script itself.
my $Pref = "&*())(*&^%$##!";
system("perl -pi -e 's|^SERVERNAME.*\$|SERVERNAME \"\Q$Pref\E\"|g' pserver.prefs");
What is the actual Perl code that will mimic -pi? I just want something that would work like sed on Perl, just as simple as can be.
Based on Todd Gardner's site, it seems it basically just reads and writes all of the file, attempting to apply the regex to every line. The solution was a bit complex for a noob Perl user like me, so I dumbed it down using:
my $ftp = "/home/shared/ftp";
my $backup = $ftp . ".bak";
rename($ftp, $backup);
open (FTP, "<", $backup) or die "Can't open $backup: $!";
open (FTP_OUT, ">", $ftp) or die "Can't open $ftp: $!";
while (<FTP>)
{
$_ =~ s|$panel_user \Q$panel_oldpass\E |$panel_user \Q$panel_newpass\E |g;
print FTP_OUT $_;
}
close(FTP);
close(FTP_OUT);
Is there anything wrong with using two opens? Should this be avoided or is it ok for a simple solution?
I must admit, a system sed command is much more simple and cleaner.
Check out perlrun which describes the options in detail. In particular, it lays out some options:
From the shell, saying
$ perl -p -i.orig -e "s/foo/bar/; ... "
is the same as using the program:
#!/usr/bin/perl -pi.orig
s/foo/bar/;
which is equivalent to
#!/usr/bin/perl
$extension = '.orig';
LINE: while (<>) {
if ($ARGV ne $oldargv) {
if ($extension !~ /\*/) {
$backup = $ARGV . $extension;
}
else {
($backup = $extension) =~ s/\*/$ARGV/g;
}
rename($ARGV, $backup);
open(ARGVOUT, ">$ARGV");
select(ARGVOUT);
$oldargv = $ARGV;
}
s/foo/bar/;
}
continue {
print; # this prints to original filename
}
select(STDOUT);
I'd just use Tie::File.
use Tie::File;
use File::Copy;
copy $file, "$file.bak" or die "Failed to copy $file to $file.bak: $!";
tie #array, "Tie::File", $file or die "Can't open $file: $!";
s/foo/bar/ for #array;
Perlmonks has a suggestion equivalent to:
use English qw<$INPLACE_EDIT>;
{
local ($INPLACE_EDIT, #ARGV) = ('.bak', #files);
while (<>) {
s/this/that/;
print;
}
}
Also recommended in the same thread is Sysadm::Install::pie
B::Deparse is your friend:
cowens#amans:~/test$ perl -MO=Deparse -pi -e 1
BEGIN { $^I = ""; }
LINE: while (defined($_ = <ARGV>)) {
'???';
}
continue {
print $_;
}
-e syntax OK
From this we can see that $^I is what implements in-place editing. Just set #ARGV to the files you want to edit, and loop away.