I am trying to implement a difference-in-differences estimator with a GLM model with Stata 13.0. The parameter I am interested in is the derivative of the expected value with respect to the interaction of binary treatment group indicator T and binary post-treatment period indicator S only (T#S, rather than the full derivative with respect to T). This approach is explained towards the end of this thread on Statalist. This is my code:
glm y i.T##i.S, exposure(e) cluster(user_id) link(log) family(poisson) robust
preserve
replace e = 30
margins rb0.T#rb0.S
restore
The preserve/replace/restore step is necessary because margins does not allow the at() option to be used with exposure variables.
Two questions.
How would I get a p-value for this effect?
Is it possible to get the effect in semi-elasticity form, perhaps by using margins with eydx() in some way?
Related
I have a dataset which is categorical dataset. I am using WEKA software for feature selection. I have used CfsSubsetEval as attribute evaluator with Greedystepwise method. I came to know this link that CFS uses Pearson correlation to find the strong correlation between the dataset. I also found out how to calculate Pearson correlation coefficient using this link. As per the link the data values need to be numerical for evaluation. Then how can WEKA did the evaluation on my categorical dataset?
The strange result is that Among 70 attributes CFS selects only 10 attributes. Is it because of the categorical dataset? Additionally my dataset is a highly imbalanced dataset where imbalanced ration 1:9(yes:no).
A Quick question
If you go through the link you can found the statement the correlation coefficient to measure the strength and direction of the linear relationship between two numerical variables X and Y. Now I can understand the strength of the correlation coefficient which is varied in between +1 to -1 but what about the direction? How can I get that? I mean the variable is not a vector so it should not have a direction.
The method correlate in the CfsSubsetEval class is used to compute the correlation between two attributes. It calls other methods, depending on the attribute types, which I've linked here:
two numeric attributes: num_num
numeric/nominal attributes: num_nom2
two nominal attributes: nom_nom
Question:
What's the difference between the bounding box(BB) produced by "BB regression algorithms in region-based object detectors" vs "bounding box in single shot detectors"? and can they be used interchangeably if not why?
While understanding variants of R-CNN and Yolo algorithms for object detection, I came across two major techniques to perform object detection i.e Region-based(R-CNN) and niche-sliding window based(YOLO).
Both use different variants(complicated to simple) in both regimes but in the end, they are just localizing objects in the image using Bounding boxes!. I am just trying to focus on the localization(assuming classification is happening!) below since that is more relevant to the question asked & explained my understanding in brief:
Region-based:
Here, we let the Neural network to predict continuous variables(BB coordinates) and refers to that as regression.
The regression that is defined (which is not linear at all), is just a CNN or other variants(all layers were differentiable),outputs are four values (π,π,β,π€), where (π,π) specify the values of the position of the left corner and (β,π€) the height and width of the BB.
In order to train this NN, a smooth L1 loss was used to learn the precise BB by penalizing when the outputs of the NN are very different from the labeled (π,π,β,π€) in the training set!
niche-Sliding window(convolutionally implemented!) based:
first, we divide the image into say 19*19 grid cells.
the way you assign an object to a grid-cell is by selecting the midpoint of an object and then assigning that object to whichever one grid cell contains the midpoint of the object. So each object, even if the objects span multiple grid cells, that object is assigned only to one of the 19 by 19 grid cells.
Now, you take the two coordinates of this grid-cell and calculate the precise BB(bx, by, bh, bw) for that object using some method such as
(bx, by, bh, bw) are relative to the grid cell where x & y are center point and h & w are the height of precise BB i.e the height of the bounding box is specified as a fraction of the overall width of the grid cell and h& w can be >1.
There multiple ways of calculating precise BB specified in the paper.
Both Algorithms:
outputs precise bounding boxes.!
works in supervised learning settings, they were using labeled dataset where the labels are bounding boxes stored(manually marked my some annotator using tools like labelimg ) for each image in a JSON/XML file format.
I am trying to understand the two localization techniques on a more abstract level(as well as having an in-depth idea of both techniques!) to get more clarity on:
in what sense they are different?, &
why 2 were created, I mean what are the failure/success points of 1 on the another?.
and can they be used interchangeably, if not then why?
please feel free to correct me if I am wrong somewhere, feedback is highly appreciated! Citing to any particular section of a research paper would be more rewarding!
The essential differences are that two-stage Faster R-CNN-like are more accurate while single-stage YOLO/SSD-like are faster.
In two-stage architectures, the first stage is usually of region proposal, while the second stage is for classification and more accurate localization. You can think of the first stage as similar to the single-stage architectures, when the difference is that the region proposal only separates "object" from "background", while the single-stage distinguishes between all object classes. More explicitly, in the first stage, also in a sliding window-like fashion, an RPN says whether there's an object present or not, and if there is - to roughly give the region (bounding box) in which it lies. This region is used by the second stage for classification and bounding box regression (for better localization) by first pooling the relevant features from the proposed region, and then going through the Fast R-CNN-like architecture (which does the classificaion+regression).
Regarding your question about interchanging between them - why would you want to do so? Usually you would choose an architecture by your most pressing needs (e.g. latency/power/accuracy), and you wouldn't want to interchange between them unless there's some sophisticated idea which will help you somehow.
I am a frequent user of scikit-learn, I want some insights about the βclass_ weight β parameter with SGD.
I was able to figure out till the function call
plain_sgd(coef, intercept, est.loss_function,
penalty_type, alpha, C, est.l1_ratio,
dataset, n_iter, int(est.fit_intercept),
int(est.verbose), int(est.shuffle), est.random_state,
pos_weight, neg_weight,
learning_rate_type, est.eta0,
est.power_t, est.t_, intercept_decay)
https://github.com/scikit-learn/scikit-learn/blob/master/sklearn/linear_model/stochastic_gradient.py
After this it goes to sgd_fast and I am not very good with cpython. Can you give some celerity on these questions.
I am having a class biased in the dev set where positive class is somewhere 15k and negative class is 36k. does the class_weight will resolve this problem. Or doing undersampling will be a better idea. I am getting better numbers but itβs hard to explain.
If yes then how it actually does it. I mean is it applied on the features penalization or is it a weight to the optimization function. How I can explain this to layman ?
class_weight can indeed help increasing the ROC AUC or f1-score of a classification model trained on imbalanced data.
You can try class_weight="auto" to select weights that are inversely proportional to class frequencies. You can also try to pass your own weights has a python dictionary with class label as keys and weights as values.
Tuning the weights can be achieved via grid search with cross-validation.
Internally this is done by deriving sample_weight from the class_weight (depending on the class label of each sample). Sample weights are then used to scale the contribution of individual samples to the loss function used to trained the linear classification model with Stochastic Gradient Descent.
The feature penalization is controlled independently via the penalty and alpha hyperparameters. sample_weight / class_weight have no impact on it.
What would b the best way to implement a simple shape-matching algorithm to match a plot interpolated from just 8 points (x, y) against a database of similar plots (> 12 000 entries), each plot having >100 nodes. The database has 6 categories of plots (signals measured under 6 different conditions), and the main aim is to find the right category (so for every category there's around 2000 plots to compare against).
The 8-node plot would represent actual data from measurement, but for now I am simulating this by selecting a random plot from the database, then 8 points from it, then smearing it using gaussian random number generator.
What would be the best way to implement non-linear least-squares to compare the shape of the 8-node plot against each plot from the database? Are there any c++ libraries you know of that could help with this?
Is it necessary to find the actual formula (f(x)) of the 8-node plot to use it with least squares, or will it be sufficient to use interpolation in requested points, such as interpolation from the gsl library?
You can certainly use least squares without knowing the actual formula. If all of your plots are measured at the same x value, then this is easy -- you simply compute the sum in the normal way:
where y_i is a point in your 8-node plot, sigma_i is the error on the point and Y(x_i) is the value of the plot from the database at the same x position as y_i. You can see why this is trivial if all your plots are measured at the same x value.
If they're not, you can get Y(x_i) either by fitting the plot from the database with some function (if you know it) or by interpolating between the points (if you don't know it). The simplest interpolation is just to connect the points with straight lines and find the value of the straight lines at the x_i that you want. Other interpolations might do better.
In my field, we use ROOT for these kind of things. However, scipy has a great collections of functions, and it might be easier to get started with -- if you don't mind using Python.
One major problem you could have would be that the two plots are not independent. Wikipedia suggests McNemar's test in this case.
Another problem you could have is that you don't have much information in your test plot, so your results will be affected greatly by statistical fluctuations. In other words, if you only have 8 test points and two plots match, how will you know if the underlying functions are really the same, or if the 8 points simply jumped around (inside their error bars) in such a way that it looks like the plot from the database -- purely by chance! ... I'm afraid you won't really know. So the plots that test well will include false positives (low purity), and some of the plots that don't happen to test well were probably actually good matches (low efficiency).
To solve that, you would need to either use a test plot with more points or else bring in other information. If you can throw away plots from the database that you know can't match for other reasons, that will help a lot.
100 periods have been collected from a 3 dimensional periodic signal. The wavelength slightly varies. The noise of the wavelength follows Gaussian distribution with zero mean. A good estimate of the wavelength is known, that is not an issue here. The noise of the amplitude may not be Gaussian and may be contaminated with outliers.
How can I compute a single period that approximates 'best' all of the collected 100 periods?
Time-series, ARMA, ARIMA, Kalman Filter, autoregression and autocorrelation seem to be keywords here.
UPDATE 1: I have no idea how time-series models work. Are they prepared for varying wavelengths? Can they handle non-smooth true signals? If a time-series model is fitted, can I compute a 'best estimate' for a single period? How?
UPDATE 2: A related question is this. Speed is not an issue in my case. Processing is done off-line, after all periods have been collected.
Origin of the problem: I am measuring acceleration during human steps at 200 Hz. After that I am trying to double integrate the data to get the vertical displacement of the center of gravity. Of course the noise introduces a HUGE error when you integrate twice. I would like to exploit periodicity to reduce this noise. Here is a crude graph of the actual data (y: acceleration in g, x: time in second) of 6 steps corresponding to 3 periods (1 left and 1 right step is a period):
My interest is now purely theoretical, as http://jap.physiology.org/content/39/1/174.abstract gives a pretty good recipe what to do.
We have used wavelets for noise suppression with similar signal measured from cows during walking.
I'm don't think the noise is so much of a problem here and the biggest peaks represent actual changes in the acceleration during walking.
I suppose that the angle of the leg and thus accelerometer changes during your experiment and you need to account for that in order to calculate the distance i.e you need to know what is the orientation of the accelerometer in each time step. See e.g this technical note for one to account for angle.
If you need get accurate measures of the position the best solution would be to get an accelerometer with a magnetometer, which also measures orientation. Something like this should work: http://www.sparkfun.com/products/10321.
EDIT: I have looked into this a bit more in the last few days because a similar project is in my to do list as well... We have not used gyros in the past, but we are doing so in the next project.
The inaccuracy in the positioning doesn't come from the white noise, but from the inaccuracy and drift of the gyro. And the error then accumulates very quickly due to the double integration. Intersense has a product called Navshoe, that addresses this problem by zeroing the error after each step (see this paper). And this is a good introduction to inertial navigation.
Periodic signal without noise has the following property:
f(a) = f(a+k), where k is the wavelength.
Next bit of information that is needed is that your signal is composed of separate samples. Every bit of information you've collected are based on samples, which are values of f() function. From 100 samples, you can get the mean value:
1/n * sum(s_i), where i is in range [0..n-1] and n = 100.
This needs to be done for every dimension of your data. If you use 3d data, it will be applied 3 times. Result would be (x,y,z) points. You can find value of s_i from the periodic signal equation simply by doing
s_i(a).x = f(a+k*i).x
s_i(a).y = f(a+k*i).y
s_i(a).z = f(a+k*i).z
If the wavelength is not accurate, this will give you additional source of error or you'll need to adjust it to match the real wavelength of each period. Since
k*i = k+k+...+k
if the wavelength varies, you'll need to use
k_1+k_2+k_3+...+k_i
instead of k*i.
Unfortunately with errors in wavelength, there will be big problems keeping this k_1..k_i chain in sync with the actual data. You'd actually need to know how to regognize the starting position of each period from your actual data. Possibly need to mark them by hand.
Now, all the mean values you calculated would be functions like this:
m(a) :: R->(x,y,z)
Now this is a curve in 3d space. More complex error models will be left as an excersize for the reader.
If you have a copy of Curve Fitting Toolbox, localized regression might be a good choice.
Curve Fitting Toolbox supports both lowess and loess localized regression models for curve and curve fitting.
There is an option for robust localized regression
The following blog post shows how to use cross validation to estimate an optimzal spaning parameter for a localized regression model, as well as techniques to estimate confidence intervals using a bootstrap.
http://blogs.mathworks.com/loren/2011/01/13/data-driven-fitting/