I'm trying to work with nasty large xml and text documents: ~40GBs.
I'm using Visual Studio 2012 on Windows 7.
I'm going to use 'Xerces' to snag the header/'footer tag' from the xmls.
I want to map an area of the file, say.. 60-120MBs.
Split the Map into (3 * processors/cores) equal parts. Setting each part as a buffer and loading the buffers into an array.
Then using (#processors/cores) while statments in new threads, I will synchronously count characters/lines/xml cycles while chewing through the the buffer array. When one buffer is completed the the process will jump to the next 'available' buffer and the completed buffer will be dropped out of memory. At the end I will add the total results into a project log.
Afterwards, I will reference the log, Split the files by character count/size(Or other option) to the nearest line or cycle and drop in the header and 'footer tag' to all the splits.
I'm doing this so I can import massive data to a MySQL server over a network with multiple computers.
My Question is, how do I create the buffer array and the file map with new threads?
Can I use :
win CreateFile
win CreateFileMapping
win MapViewOfFile
with standard ifstream operations and char buffers or should I opt something else?
Futher clarification:
My thinking is that if I can have the hard drive streaming the file into memory from one place and in one direction that I can use the full processing power of the machine to chew through seperate but equal buffers.
~Flavor: It's kind of like being a Shepard trying to scoop food out from one huge bin with 3-6 Large buckets with only two arms for X sheep that need to stay inside the fenced area. But they all move at the speed of light.
A few ideas or pointers might help me along here.
Any thoughts are Most Welcome. Thanks.
while(getline(my_file, myStr))
{
characterCount += myStr.length();
lineCount++;
if(my_file.eof()){
break;
}
}
This was the only code at run time for the test. 2hours, 30+min. 45-50% total processor for the program running it on a dual core 1.6Mhz laptop with 2GB RAM. Most of the RAM loaded right now is 600+MB from ~50 tabs open in firefox, Visual Studio at 60MB, then etcs.
IMPORTANT: During the test, the program running the code, which is only a window, and a dialog box, seemed to dump it's own working and private set of ram, down to like 300K ish, and didn't respond for the length of the test. I need to make another thread for the while statement I'm sure. But this means that NONE of the file was read into a buffer. The CPU was struggling for the entire run to keep up with the tinyest effort from the hard drive.
P.S. Further proof of CPU bottlenecking. It might take me 20min to transfer than entire file to another computer over my wireless network. Which includes the read process and a socket catch to write process on the other computer.
UPDATE
I used this adorable little thing to go from the previous test time to about 15-20min which is in line with what Mats Petersson was saying.
while (my_file.read( &bufferOne[0], bufferOne.size() ))
{
int cc = my_file.gcount();
for (int i = 0; i < cc; i++)
{
if (bufferOne[i] == '\n')
lineCount++;
characterCount++;
}
currentPercent = characterCount/onePercent;
SendMessage(GetDlgItem(hDlg, IDC_GENPROGRESS), PBM_SETPOS, currentPercent, 0);
}
Granted this is a single loop and it actually behaved much more appropriately than the previous test. This test was ~800% faster than the tight loop shown above this one with Getline. I set the buffer for this loop at 20MB. I jacked this code from: SOF - Fastest Example
BUT...
I would like to point out that while polling the process in resource mon and task manager, it clearly showed the first core at 75-90% usage, the second fluxuately 25-50% (Pretty standard for some minor background stuff that I have open), and the hard drive at.. wait for it... 50%. Some 100% disk time spikes but also some lows at 25%. All of which basically means that Splitting the buffer processing between two different threads could very well be a benefit. It will use all the system resources but.. that's what I want. I'll update later today when I have the working prototype.
MAJOR UPDATE:
Finally finished my project after a bunch of learning. No File Map needed. Only a bunch of vector char's. I have successfully built a dynamically executing file stream line and character counter.
The good news, went from the previous 10-15min marker to ~3-4min on a 5.8GB file, BOOYA!~
Very short answer: Yes, you can use those functions.
For reading data, it's likely the most efficient method to map the file content into memory, since it saves having to copy the memory into a buffer in the application, just read it straight into the place it's supposed to go. So, no problem as long as you have enough address space available - 64-bit machines should certainly have plenty, in a 32-bit system it may be more of a scarce resource - but for sections of a few hundred MB, it shouldn't be a huge issue.
However, using multiple threads, I'm not at all convinced. I have a fair idea that reading more than one part of a very large file will be counter productive. This will increase the amount of head movement on the disk, which is a large portion of transfer rate. You can count on some 50-100MB/s transfer rates for "ordinary" systems. If the system has some sort of raid controller or some such, maybe around double that - very exotic raid controllers may achieve three times.
So reading 40GB will take somewhere in the order of 3-15 minutes.
The CPU is probably not going to be very busy, and running multiple threads is quite likely to worsen the overall performance of the system.
You may want to keep a thread for reading and one for writing, and only actually write out the data once you have a sufficient amount of it, again, to avoid unnecessary moves of the read/write head on the disk(s).
Related
I went through all the answers that were available regarding real-time reading a text file but none seems to work.
In my program 1 have a continuously growing text file being written by a hardware which is giving two coordinates (two columns).
In program 2, I want to read those coordinates in real time and move another hardware to the coordinates that are being written.
The biggest problem is I want to work with shortest possible delay (under 50ms).
I tried notepad++, but its refresh rate is 3 seconds which is too much.
Can anyone tell how can this be done?
Your fastest response is to either poll (read the hardware) directly or to have the hardware create an event (interrupt) that calls your program.
Writing to a file takes time. The OS has to find space on the hard drive, write to the hard drive; and not to mention the time required to ramp up the motors to spin the hard drive.
Writing to memory is a lot quicker. A more efficient method is for the H/W to write to memory rather than a file. Alternately, a memory mapped file or RAM drive will be the next best option.
Also remember that Windows is not a real-time operating system. You have other tasks in your system being swapped out and executed. This takes time away from your "real time" requirements. You may want to research Windows to see if there is an API that allows your program exclusive access to the processor (or makes your program a very high priority).
Research "Windows Drivers" to write code that can service your H/W and perform activities in real time.
I tried this:
int main()
{
std::ifstream ifs("file.txt");
if (ifs.is_open())
{
std::string line;
while (true)
{
while (std::getline(ifs, line)) std::cout << line << "\n";
if (!ifs.eof()) break;
ifs.clear();
}
}
return 0;
}
But it reads till the end and when i add more values to my text file, it doesn't read that. But when I refresh my file, I get the o/p on the console.
I have also tried using tellg and seekg but that also doesn't help.
New description of the problem:
I currently run our new data acquisition software in a test environment. The software has two main threads. One contains a fast loop which communicates with the hardware and pushes the data into a dual buffer. Every few seconds, this loop freezes for 200 ms. I did several tests but none of them let me figure out what the software is waiting for. Since the software is rather complex and the test environment could interfere too with the software, I need a tool/technique to test what the recorder thread is waiting for while it is blocked for 200 ms. What tool would be useful to achieve this?
Original question:
In our data acquisition software, we have two threads that provide the main functionality. One thread is responsible for collecting the data from the different sensors and a second thread saves the data to disc in big blocks. The data is collected in a double buffer. It typically contains 100000 bytes per item and collects up to 300 items per second. One buffer is used to write to in the data collection thread and one buffer is used to read the data and save it to disc in the second thread. If all the data has been read, the buffers are switched. The switch of the buffers seems to be a major performance problem. Each time the buffer switches, the data collection thread blocks for about 200 ms, which is far too long. However, it happens once in a while, that the switching is much faster, taking nearly no time at all. (Test PC: Windows 7 64 bit, i5-4570 CPU #3.2 GHz (4 cores), 16 GB DDR3 (800 MHz)).
My guess is, that the performance problem is linked to the data being exchanged between cores. Only if the threads run on the same core by chance, the exchange would be much faster. I thought about setting the thread affinity mask in a way to force both threads to run on the same core, but this also means, that I lose real parallelism. Another idea was to let the buffers collect more data before switching, but this dramatically reduces the update frequency of the data display, since it has to wait for the buffer to switch before it can access the new data.
My question is: Is there a technique to move data from one thread to another which does not disturb the collection thread?
Edit: The double buffer is implemented as two std::vectors which are used as ring buffers. A bool (int) variable is used to tell which buffer is the active write buffer. Each time the double buffer is accessed, the bool value is checked to know which vector should be used. Switching the buffers in the double buffer just means toggling this bool value. Of course during the toggling all reading and writing is blocked by a mutex. I don't think that this mutex could possibly be blocking for 200 ms. By the way, the 200 ms are very reproducible for each switch event.
Locking and releasing a mutex just to switch one bool variable will not take 200ms.
Main problem is probably that two threads are blocking each other in some way.
This kind of blocking is called lock contention. Basically this occurs whenever one process or thread attempts to acquire a lock held by another process or thread. Instead parallelism you have two thread waiting for each other to finish their part of work, having similar effect as in single threaded approach.
For further reading I recommend this article for a read, which describes lock contention with more detailed level.
Since you are running on windows maybe you use visual studio? if yes I would resort to VS profiler which is quite good (IMHO) in such cases, once you don't need to check data/instruction caches (then the Intel's vTune is a natural choice). From my experience VS is good enough to catch contention problems as well as CPU bottlenecks. you can run it directly from VS or as standalone tool. you don't need the VS installed on your test machine you can just copy the tool and run it locally.
VSPerfCmd.exe /start:SAMPLE /attach:12345 /output:samples - attach to process 12345 and gather CPU sampling info
VSPerfCmd.exe /detach:12345 - detach from process
VSPerfCmd.exe /shutdown - shutdown the profiler, the samples.vsp is written (see first line)
then you can open the file and inspect it in visual studio. if you don't see anything making your CPU busy switch to contention profiling - just change the "start" argument from "SAMPLE" to "CONCURRENCY"
The tool is located under %YourVSInstallDir%\Team Tools\Performance Tools\, AFAIR it is available from VS2010
Good luck
After discussing the problem in the chat, it turned out that the Windows Performance Analyser is a suitable tool to use. The software is part of the Windows SDK and can be opened using the command wprui in a command window. (Alois Kraus posted this useful link: http://geekswithblogs.net/akraus1/archive/2014/04/30/156156.aspx in the chat). The following steps revealed what the software had been waiting on:
Record information with the WPR using the default settings and load the saved file in the WPA.
Identify the relevant thread. In this case, the recording thread and the saving thread obviously had the highest CPU load. The saving thread could be easily identified. Since it saves data to disc, it is the one that with file access. (Look at Memory->Hard Faults)
Check out Computation->CPU usage (Precise) and select Utilization by Process, Thread. Select the process you are analysing. Best display the columns in the order: NewProcess, ReadyingProcess, ReadyingThreadId, NewThreadID, [yellow bar], Ready (µs) sum, Wait(µs) sum, Count...
Under ReadyingProcess, I looked for the process with the largest Wait (µs) since I expected this one to be responsible for the delays.
Under ReadyingThreadID I checked each line referring to the thread with the delays in the NewThreadId column. After a short search, I found a thread that showed frequent Waits of about 100 ms, which always showed up as a pair. In the column ReadyingThreadID, I was able to read the id of the thread the recording loop was waiting for.
According to its CPU usage, this thread did basically nothing. In our special case, this led me to the assumption that the serial port io command could cause this wait. After deactivating them, the delay was gone. The important discovery was that the 200 ms delay was in fact composed of two 100 ms delays.
Further analysis showed that the fetch data command via the virtual serial port pair gets sometimes lost. This might be linked to very high CPU load in the data saving and compression loop. If the fetch command gets lost, no data is received and the first as well as the second attempt to receive the data timed out with their 100 ms timeout time.
My application records audio samples from a microphone connected to my PC. So I chose the Windows WaveInXXX API to do the job.
After reading the documentation I decided to avoid using the callback mechanism with WaveInProc to save me the hassle synchronizing the threads. The whole application is pretty big and I thought this would make debugging simpler. When the application requests a block of samples, I just iterate over my buffer queue, take one out, copy the data, unprepare it, prepare it and add it back to the buffer queue. Basic program structure looks like this, I hope it makes the basic program flow clear:
WaveInOpen()
WaveInStart()
FunctionAddingPreparedBuffersToTheQueue()
while(someConditionThatEventuallyBecomesFalse)
if(NextBufferInQueueIsMarkedDone)
GetDataFromBuffer()
UnpreparePrepareHeaderAndAddBuffer()
else
WaitForAShortTime()
WaveInStop()
WaveInClose()
Now the problem appears: After some time (and I am unable to reproduce the exact condition), WaveInAddBuffer() causes a deadlock although it's in the same thread as all the rest. The header for the buffer that shall be added when the deadlock happens is prepared and dwFlags == WHDR_PREPARED == 2.
Any ideas what could cause this deadlock?
I have not seen such a problem, but a guess might be something like fragmentation related to all the unprepare/prepare cycles. They are not necessary. You can do the prepare once for each buffer and then unprepare when finished recording. (Prepare locks the buffer into physical memory.)
I'm reading a big file using fread. When I interrupt the program during it using Ctrl+C, the program hangs and is not killable, also not with kill -9. It simple sticks with 100% CPU, keeping the RAM it had already allocated. It would be great to get that fixed, but it would also be okay just to be able to kill that application from outside (the main problem being the fact that I can't restart that machine myself).
Is there a way of doing that in Unix?
Thanks!
Here is the source:
int Read_New_Format(const char* prefix,const char* folder)
{
char filename[500];
long count_pos;
//open files for reading.
sprintf(filename,"%s/%s.pos.mnc++",folder,prefix);
FILE *pos = fopen(filename,"r");
if(pos==NULL)
{
printf("Could not open pos file %s\n",filename);
}
//read the number count of entries in each of the three files.
fread(&count_pos,sizeof(long),1,pos);
printf("[...]");
//read the complete file into an array.
float *data_pos = new float[3*count_pos];
fread(data_pos,3*sizeof(float),*count_pos,pos);
printf("Read files.\n");
[...]
}
If your program cannot be interrupted by a signal, that almost surely means it's in an uninterruptable sleep state. This is normally an extremely short-lived state that only exists momentarily while waiting for the physical disk to perform a read or write, either due to an explicit read or write call that can't be satisfied by the cache, or one resulting from a page fault where a disk-backed page is not swapped into physical memory.
If the uninterruptable sleep state persists, this is almost surely indicative of either extremely high load on the storage device (a huge number of IO requests all happening at once) or, much more likely, damaged hardware.
I suspect you have a failing hard disk or scratched optical disc.
Problem wasn't reproducable after some days. Maybe a problem with the file system. As a workaround, direct use of the unix library routines instead of fread worked.
I am writing an application needs to use large audio multi-samples, usually around 50 mb in size. One file contains approximately 80 individual short sound recordings, which can get played back by my application at any time. For this reason all the audio data gets loaded into memory for quick access.
However, when loading one of these files, it can take many seconds to put into memory, meaning my program if temporarily frozen. What is a good way to avoid this happening? It must be compatible with Windows and OS X. It freezes at this : myMultiSampleClass->open(); which has to do a lot of dynamic memory allocation and reading from the file using ifstream.
I have thought of two possible options:
Open the file and load it into memory in another thread so my application process does not freeze. I have looked into the Boost library to do this but need to do quite a lot of reading before I am ready to implement. All I would need to do is call the open() function in the thread then destroy the thread afterwards.
Come up with a scheme to make sure I don't load the entire file into memory at any one time, I just load on the fly so to speak. The problem is any sample could be triggered at any time. I know some other software has this kind of system in place but I'm not sure how it works. It depends a lot on individual computer specifications, it could work great on my computer but someone with a slow HDD/Memory could get very bad results. One idea I had was to load x samples of each audio recording into memory, then if I need to play, begin playback of the samples that already exist whilst loading the rest of the audio into memory.
Any ideas or criticisms? Thanks in advance :-)
Use a memory mapped file. Loading time is initially "instant", and the overhead of I/O will be spread over time.
I like solution 1 as a first attempt -- simple & to the point.
If you are under Windows, you can do asynchronous file operations -- what they call OVERLAPPED -- to tell the OS to load a file & let you know when it's ready.
i think the best solution is to load a small chunk or single sample of wave data at a time during playback using asynchronous I/O (as John Dibling mentioned) to a fixed size of playback buffer.
the strategy will be fill the playback buffer first then play (this will add small amount of delay but guarantees continuous playback), while playing the buffer, you can re-fill another playback buffer on different thread (overlapped), at least you need to have two playback buffer, one for playing and one for refill in the background, then switch it in real-time
later you can set how large the playback buffer size based on client PC performance (it will be trade off between memory size and processing power, fastest CPU will require smaller buffer thus lower delay).
You might want to consider a producer-consumer approach. This basically involved reading the sound data into a buffer using one thread, and streaming the data from the buffer to your sound card using another thread.
The data reader is the producer, and streaming the data to the sound card is the consumer. You need high-water and low-water marks so that, if the buffer gets full, the producer stops reading, and if the buffer gets low, the producer starts reading again.
A C++ Producer-Consumer Concurrency Template Library
http://www.bayimage.com/code/pcpaper.html
EDIT: I should add that this sort of thing is tricky. If you are building a sample player, the load on the system varies continuously as a function of which keys are being played, how many sounds are playing at once, how long the duration of each sound is, whether the sustain pedal is being pressed, and other factors such as hard disk speed and buffering, and amount of processor horsepower available. Some programming optimizations that you eventually employ will not be obvious at first glance.