I have Googled everywhere, and have not managed to figure out how to remove the -fpermissive flag from my Qt-generated Makefiles. The -fpermissive flag is defaultly there, even if I do QMAKE_CXXFLAGS -= -fpermissive in my Qt project file, attempting to remove it. Here is my Makefile where the flags are:
CFLAGS = -fpermissive -finline-functions -Wno-long-long -g -Wall $(DEFINES)
CXXFLAGS = -fpermissive -finline-functions -Wno-long-long -g -fexceptions -mthreads -frtti -Wall $(DEFINES)
How can I remove these?
My QtCreator-generated makefiles don't have -fpermissive anywhere in them, at least as far as I can Ctrl+F.
Check your project's Build Settings, and make sure you don't have -fpermissive in there as command-line arguments.
This is the the same two lines in my QMake-generated makefile:
CFLAGS = -pipe -fno-keep-inline-dllexport -O2 -Wall -Wextra $(DEFINES)
CXXFLAGS = -pipe -fno-keep-inline-dllexport -O2 -std=c++11 -frtti -Wall -Wextra -fexceptions -mthreads $(DEFINES)
My makefiles also references a file called 'qmake.conf', which for me is located at:
C:/Qt/Qt5.0.1/5.0.1/mingw47_32/mkspecs/win32-g++/qmake.conf
It looks like the qmake.conf is used to help generate makefiles for different compilers and platforms, and can add arguments to your makefile.
Related
i am trying to compile this git https://github.com/yapb/yapb locally
i am using ubuntu 64bit, and it says i must compile 32bit
i am using now
CC=clang CXX=clang meson build-clang
but get this error
FAILED: yapb.so.p/src_chatlib.cpp.o
clang -Iyapb.so.p -I. -I.. -fvisibility=hidden -flto
-fcolor-diagnostics -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall
-Winvalid-pch -Wnon-virtual-dtor -Wextra -Wpedantic -Werror -std=c++14
-fno-exceptions -O3 -DVERSION_GENERATED -fno-threadsafe-statics
-fno-exceptions -fno-rtti -m32 -pedantic -fdata-sections
-ffunction-sections -mtune=generic -fno-builtin -funroll-loops
-fomit-frame-pointer -fno-stack-protector -fvisibility=hidden
-fvisibility-inlines-hidden -msse2 -mfpmath=sse -fPIC
-isystem../ext/crlib -isystem../ext -isystem../inc -isystem..
-isystem. -MD -MQ yapb.so.p/src_chatlib.cpp.o -MF
yapb.so.p/src_chatlib.cpp.o.d -o yapb.so.p/src_chatlib.cpp.o -c
../src/chatlib.cpp
In file included from ../src/chatlib.cpp:8:
In file included from ../inc/yapb.h:10:
In file included from ../ext/hlsdk/extdll.h:28:
In file included from ../ext/crlib/crlib/string.h:17:
../ext/crlib/crlib/array.h:15:10: fatal error: 'initializer_list' file not found
#include <initializer_list>```
Double-check the pre-requisites mentioned in YaPB Building the Bot page.
Try and open a regular CMD (instead of Powershell), making sure it inherits all your previous setups (meaning its %PATH% does reference g++.exe, pip.exe, and so on.
I am compiling an example application from the SDK repository of a third party vendor. I receive an error that one of the C++ header's (algorithm) cannot be found:
if [ ! -d .deps/ ]; then mkdir -p .deps/; fi
/opt/llvm-3.8.0/bin/clang++ -M -isystem/opt/tbricks/sdk/include64 -I../../.. -I../../../.. -I./../../../.. -DLINUX -DLINUX64 -DTB_USE_RCU -DURCU_INLINE_SMALL_FUNCTIONS -DU_USING_ICU_NAMESPACE=0 -DNDEBUG -D_POSIX_PTHREAD_SEMANTICS -fPIC -D_GNU_SOURCE -DTB_USE_RCU -DTB_USE_RCU -D_GLIBCXX_USE_CXX11_ABI=0 -m64 --gcc-toolchain=/opt/gcc-5.2.0 -flto=full -std=gnu++14 -D_GLIBCXX_DEPRECATED= -pipe -fno-omit-frame-pointer -ffast-math -fno-finite-math-only -pthread -march=core2 -mtune=corei7 -g -O3 -Qunused-arguments -fnon-call-exceptions -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wshadow -Wpointer-arith -Wno-self-assign -Wno-unused-function -Wno-gnu-empty-initializer -Wno-unused-parameter -Wno-ignored-qualifiers -Wno-mismatched-tags -Wno-unused-local-typedef -Wno-parentheses-equality -Wno-unused-private-field -Wno-missing-field-initializers -Wno-missing-braces -Werror=return-type -Werror=overloaded-virtual -DSTRATEGY_BUILD_PROFILE=\"release\" ../../../../shared/Helpers.cpp > .deps/Helpers.o.d
../../../../shared/Helpers.cpp:14:10: fatal error: 'algorithm' file not found
#include <algorithm>
What sets the location path to search for C++ header files, such as algorithm? Is there anything I can grep for within makefiles?
Either install g++ alongside (you need libstdc++) or use LLVM libc++ and specify it with -stdlib=libc++
I have this standalone C++ code
that I'm trying to wrap in an R
package.
My problem is that I absolutely
want it to be compiled with the
-O3 flag on.
So in the src/Makevars file
I put:
PKG_CPPFLAGS = -I../inst/include
PKG_CXXFLAGS = -O3
CXX_STD = CXX11
and still when I install my package on my
machine, I see:
g++ -std=c++0x -I/usr/share/R/include -DNDEBUG -I../inst/include -O3 -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mycppfunctions.cpp -o mycppfunctions.o
g++ -std=c++0x -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o mycppfunctions.so mycppfunctions.o -L/usr/lib/R/lib -lR
(the dreaded -O2 flag appears to the right)
so my question is: how can I overwrite the
cpp flags used when g++ is invoked by R CMD?
Edit:
Recently, in another package, I found a way to do
something similar for a F77 code (also in an R package).
Basically, by adding this to the Makevars:
PKG_FFLAGS = $(FPICFLAGS) $(SHLIB_FFLAGS)
all: $(SHLIB)
otherf77foo.o: otherf77foo.f
$(F77) $(PGK_FFLAGS) -O3 -pipe -g -c -o otherf77foo.o otherf77foo.f
but I don't know how to do the same for a cpp code...
Edit2:
So, doing this is totally possible. Dirk Eddelbuettel question 'b)' from his answer below
guided me to the solution. So, all I had to do was to
place this in the src/Makevars file:
mycppfoo.o: mycppfoo.cpp
g++ -std=c++0x -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -g -O3 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mycppfoo.cpp -o mycppfoo.o
g++ -std=c++0x -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o mycppfoo.so mycppfoo.o -L/usr/lib/R/lib -lR
and my problem was solved!
You can't (as per a comment by Simon Urbanek on r-devel a while back).
But it should not matter as AFAIK the right-most value wins. And R puts its values to the left, and lets you add your values (eg via CXX_FLAGS from, say, ~/.R/Makevars or PKG_CXXFLAGS from the src/Makevars in your package) to the right.
So just override with -O3 and it should be -O3.
For what it is worth, my current values in ~/.R/Makevars are:
CFLAGS += -O3 -Wall -pipe -pedantic -std=gnu99
CXXFLAGS += -O3 -Wall -pipe -Wno-unused -pedantic
and you could of course throw in -mnative or your specific CPU identifier.
Lastly, if you really wanted you could edit /etc/R/Makeconf but you'd have to do that
after each upgrade of the R package. And as I argue here you do not need to as the scheme suggested here should work.
Edit: In response to your edit:
a) The clear recommendation on r-devel (please check the archives) is that you should avoid Makefile logic if you can. IIRC this echoed in the Writing R Extension manual.
b) You declared a rule to build an .o (object) file from an .f (source) file. Did you try doing the same with cpp instead of f?
Lastly, you have not explained exactly why the world is coming to an end if your file is built with -O2 rather than -O3. You should understand that as an author of source, you can't fully control with which compiler options (let alone compiler versions) people will build your package.
newedit: Okay I'm a fool. It solved the problem for Rcpp (which I don't care about), but it doesn't work for the github.com/ohdsi/cyclops.git package that I do care about. That one still gets -O2 stuck right-most. This is ridiculous. Control over command-line parameters might be the single most important piece of this entire operation. R needs a better build system.
edit: Of course after days of trouble, I figure it out right after posting. My problem was that I was using the CXX_STD = CXX11 flag. Apparently with this flag you need to use CXX11FLAGS += .... So if your Makevars file contains CXX11FLAGS += -O0 -Wall it will correctly put this to the right of the -O2 flag if you're using C++11.
No matter what I do I can't get -O0 to show up on the right. I have the following in my ~/.R/Makevars:
CFLAGS += -O0 -Wall
CXXFLAGS += -O0 -Wall
CPPFLAGS += -O0 -Wall
PKG_CFLAGS += -O0 -Wall
PKG_CXXFLAGS += -O0 -Wall
PKG_CPPFLAGS += -O0 -Wall
I have installed Rcpp from source (as a test...I'm not interested in it directly) using
install.packages(getwd(), repos = NULL, type = "source")
and that did correctly use -O0.
With my current configuration, I end up getting three different -O0's to the left and final -O2 on the right. Has anyone else run into this problem?
The software I'm installing is at github.com/ohdsi/cyclops.git, though I'm not sure what that would be important.
I would like to set the C++ compiler flag to -O0 in the Makevars of an Rcpp project.
If I take a look at /etc/R/Makeconf, I see that the compilation command seems to be
$(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) -c $< -o $#
Since
ALL_CXXFLAGS = $(R_XTRA_CXXFLAGS) $(PKG_CXXFLAGS) $(CXXPICFLAGS) $(SHLIB_CXXFLAGS) $(CXXFLAGS)
I can edit in the Makevars the variable $(PKG_CXXFLAGS) to add headers for specific libraries, but I am not satisfied with CXXFLAGS = -O3 -pipe -g $(LTO). I would also like to be able to do that directly in the Makevars, so as to tune each project according to my needs.
When I edit CXXFLAGS in the Makevar, nothing happens. Is is possible to adjust that variable ? Is another approach possible ? I know that I can edit ~/.R/Makevars, and switch as requested. I wondered if there was a more robust approach.
You generally want the PKG_* variants in your local file, e.g. ~/.R/Makevars.
Here is a (shortened, edited) portion of mine:
## for C code
CFLAGS= -O3 -g0 -Wall -pipe -pedantic -std=gnu99
## for C++ code
#CXXFLAGS= -g -O3 -Wall -pipe -Wno-unused -pedantic -std=c++11
CXXFLAGS= -g -O3 -Wall -pipe -Wno-unused -pedantic
## for Fortran code
#FFLAGS=-g -O3 -Wall -pipe
FFLAGS=-O3 -g0 -Wall -pipe
## for Fortran 95 code
#FCFLAGS=-g -O3 -Wall -pipe
FCFLAGS=-O3 -g0 -Wall -pipe
VER=-4.8
CC=ccache gcc$(VER)
CXX=ccache g++$(VER)
SHLIB_CXXLD=g++$(VER)
FC=ccache gfortran
F77=ccache gfortran
MAKE=make -j8
The other (system-global) approach is to create and edit /etc/R/Makeconf.site (or, when /etc/R/ does not exist, $RHOME/etc/R/Makeconf.site.
My goal is to get rid of some types of compiler warnings. I found out that I can do that by adding compiler flags in my .pro file:
QMAKE_CXXFLAGS += -Wno-unused-variable -Wno-reorder
The problem is that they are added before flags that are generated by Qt build system. I've examined my compiler output:
g++-4.2 -c -pipe -Wno-unused-variable -Wno-reorder -g -gdwarf-2 -arch
x86_64 -Xarch_x86_64 -mmacosx-version-min=10.5 -Wall -W
-DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB
So as you can see -Wall goes after my flags and discards them. What should I do to add those flags after ?
Don't use QMAKE_CXXFLAGS but rather override QMAKE_CXXFLAGS_WARN_ON with your own warnings:
QMAKE_CXXFLAGS_WARN_ON = -Wno-unused-variable -Wno-reorder