I am trying to install PARI/GP and in the configuration step I get:
$ ./Configure
[...]
Looking for the compilers ...
...cc is /usr/bin/cc
...gcc is /usr/local/bin/gcc
GNU compiler version 4.8.0 20120705 (experimental) (GCC)
###
### C compiler does not work. PARI/GP requires an ANSI C compiler! Aborting.
###
### Compiler was: /usr/local/bin/gcc
$ gcc --version
gcc (GCC) 4.8.0 20120705 (experimental)
This is strange because the documentation says:
"Only ANSI C and C++ compilers are supported. Choosing the GNU compiler
gcc/g++ enables the inlining of kernel routines (about 20% speedup; if you
use g++, it is a good idea to include the -fpermissive flag). If you choose
not to use gcc, the C++ version of Pari will be a little faster because of
general inlining, but can be used in library mode only with C++ programs.
We strongly recommand using gcc all the way through."
I have also tried with g++ with the same result.
I am trying to compile on a linux x86_64.
Any ideas?
Thanks in advance,
M;
The config/get_cc script in PARI's top level tried to compile a test program
and failed.
Look for the line
$CC $CFLAGS $extraflag -o $exe ansi.c 2>/dev/null && $RUNTEST $exe
and remove the 2>/dev/null. Configure should now print out explicit error
messages from the compiler. They should provide a hint.
I had the same problem. Here is the solution for Linux Mint 17.1 64-bit:
sudo apt-get install gcc libc6-dev libgmp-dev
This command also installs the GMP library (recommended for PARI/GP).
Thanks to K.B. for the hint on how to see the problem.
Related
I have two GCC compilers installed on a Linux (CentOS) machine. The old version of GCC (4.4.7) is in the default folder (came with CentOS) and the newer one that I intend to use is in /usr/local/gcc/4.9.3/. My code utilizes MPI and LAPACK/LAPACKE/BLAS libraries and with the old GCC I used to compile source (for example “main.cpp”) like this:
mpiCC main.cpp -o main -L/home/USER1/lapack-3.6.1 -llapacke -llapack -lblas -lm –Wall
This still invokes the old GCC 4.4.7. What should I modify so the above MPI compilation (mpiCC) invokes GCC 4.9.3 executable from the new location at /usr/local/gcc/4.9.3/el6/bin/ ?
From MPICH Installer's Guide version 3.2 (page 6):
"The MPICH configure step will attempt to find the C, C++, and Fortran compilers for you, but if you either want to override the default or need to specify a compiler that configure doesn't recognize, you can specify them on the command line [...]. For example, to select the Intel compilers instead of the GNU compilers on a system with both, use"
./configure CC=icc CXX=icpc F77=ifort FC=ifort ...
Is there a way to dicriminate between different version of GCC compilers in ./configure ?
I guess mpiCC uses the first gcc compiler found in the $PATH variable.
You should be able to set the new version of gcc by running:
PATH="/usr/local/gcc/4.9.3/el6/bin:$PATH" mpiCC main.cpp -o main -L/home/USER1/lapack-3.6.1 -llapacke -llapack -lblas -lm –Wall
If you really want two versions of GCC installed at the same time and use both of them here is a good link that explains how to do this:
http://gcc.gnu.org/faq.html#multiple
Finally found how. Here is the recipe:
1) check your if you shell is bash, if not set it to bash: $ echo $SHELL
/bin/tcsh
It was tcsh and needed to be set to bash.
2) Switch to bash: $ bash
bash-4.1$
3) Add new version of GCC to the front of the PATH:
bash-4.1$ export PATH=/usr/local/gcc/4.9.3/el6/bin:$PATH
4) Check the PATH: bash-4.1$ echo $PATH
/usr/local/gcc/4.9.3/el6/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin
5) Check version of GCC used (It picks up the first GCC from the PATH):
bash-4.1$ gcc --version
gcc (GCC) 4.9.3
Note: this is just for the current session.
$ gcc 12.c -fopenmp
12.c:9:9: fatal error: 'omp.h' file not found
#include<omp.h>
^
1 error generated.
While compiling openMP programs I get the above error. I am using OS X Yosemite. I first tried by installing native gcc compiler by typing gcc in terminal and later downloaded Xcode too still I got the same error. Then I downloaded gcc through:
$ brew install gcc
Still I'm getting the same error. I did try changing the compiler path too still it shows:
$ which gcc
/usr/bin/gcc
So how do I compile programs with gcc?
EDIT: As of 13 Aug 2017 the --without-multilib option is no longer present in Homebrew and should not be used. The standard installation
brew install gcc
will provide a gcc installation that can be used to compile OpenMP programs. As below it will be installed into /usr/local/bin as gcc-<version>. The current gcc version available from Homebrew (as of writing) will install as gcc-8. You can compile programs with OpenMP support using it via
gcc-8 -fopenmp hello.c
Alternatively you could put an alias in your .bashrcfile as
alias gcc='gcc-8'
and then compile using
gcc -fopenmp hello.c
Note: I'm leaving the original post here in case it is useful to somebody.
The standard gcc available on OS X through XCode and Clang doesn't support OpenMP. To install the Homebrew version of gcc with OpenMP support you need to install it with
brew install gcc --without-multilib
or as pointed out by #Mark Setchell
brew reinstall gcc --without-multilib
This will install it to the /usr/local/bin directory. Homebrew will install it as gcc-<version> so as not to clobber the gcc bundled with XCode.
I finally did some research and I finally came across a solution here: <omp.h> library isn't found in the GCC version (4.2.1) in Mavericks.
I got a new gcc complier from http://hpc.sourceforge.net/
Then I placed a new executable folder by
$ sudo tar -xvf gcc-4.9-bin.tar -C /
Later I switched to it by
export PATH=/usr/local/bin:$PATH that seemed to do the trick!
My OS is OS X 10.10.2 and the default compiler for C is clang.
But this version of clang does not support ubsan (undefined sanitizer) which comes in the 3.4 release of clang. I also want to use KLEE to do some analysis. AFAIK KLEE works well with LLVM-<=3.4. I decided to install
llvm-3.4 and clang-3.4 in my laptop.
After installing clang-3.4 in my system, I encountered a issue that the compiler can not locate the c++ header file. I installed clang-3.4 in /usr/local and I can find the c++ header file in /usr/local/include/c++/4.8.4. How can I add this directory to the search path of clang-3.4 and also the c++ library?
for the following demo code:
#include <iostream>
using namespace std;
int main(){
cout<<"Hellow World\n";
return 0;
}
When I compile it using command clang++ test.cpp, I got the error
test1.cpp:1:10: fatal error: 'iostream' file not found
#include <iostream>
^
1 error generated.
Below is the version of clang I used
clang version 3.4 (tags/RELEASE_34/final)
Target: x86_64-apple-darwin14.1.0
Thread model: posix
I used the following shell command to install llvm-3.4 and clang-3.4:
wget http://llvm.org/releases/3.4/llvm-3.4.src.tar.gz \
http://llvm.org/releases/3.4/clang-3.4.src.tar.gz \
http://llvm.org/releases/3.4/clang-tools-extra-3.4.src.tar.gz \
http://llvm.org/releases/3.4/compiler-rt-3.4.src.tar.gz
tar zxf llvm-3.4.src.tar.gz
tar zxf clang-3.4.src.tar.gz -C llvm-3.4/tools
mv llvm-3.4/tools/clang{-3.4,}
tar zxf clang-tools-extra-3.4.src.tar.gz -C llvm-3.4/tools/clang/tools
mv llvm-3.4/tools/clang/tools/{clang-tools-extra-3.4,extra}
tar zxf compiler-rt-3.4.src.tar.gz -C llvm-3.4/projects
mv llvm-3.4/projects/compiler-rt{-3.4,}
cd llvm-3.4
./configure --enable-cxx11 \
--enable-bindings=none --enable-shared \
--enable-debug-symbols --enable-optimized
make
make install
Now I have two versions of clang in my OS, one is the default one shipped with OSX located in /usr/bin and the other is clang-3.4 located in /usr/local/bin. The previous one can find the C++ header file while the latter can not.
Did you read the user documentation of clang notably the section on command line options ? BTW, current (march 2015) version of clang is 3.6!
For C++ code you should use the clang++ command, not the clang command.
You might pass -I and -L options to clang++ but you might perhaps have misinstalled your clang compiler.
You should be aware of the -v and -H options of clang or clang++ ; they could be useful, at least to understand more your issue.
addenda
BTW, a program reported to work with Clang 3.4 is extremely likely to work with a more modern version, like Clang 3.5 or 3.6
You probably have a PATH issue; you should have configure -d your Clang-3.4 & LLvm-3.4 programs with --program-suffix=-my-3.4 (if you do that, repeat your entire compiler build and installation) and you probably should run /usr/local/bin/clang++-my-3.4 ; maybe you also need some --with-gcc-toolchain additional configure option.
I'm pretty sure that you should be able to try to compile or use your mysterious software requiring Clang-3.4 with a more modern version like 3.5 or 3.6 ; your MacOSX 10.10.2 is rumored to have a Clang-3.5 based system compiler, it very probably is able to compile and work with your mysterious software.
I have recently installed GCC 4.9.2 (port name gcc49) through MacPorts. I am quite happy with its new features such as colorized diagnostics and C++1y/C++14 support improvements, etc.
However, since I started to compile code using GCC 4.9.2, I realized that it is not generating debug symbol directory *.dSYM and gdb says "no debugging symbols found" when I try to debug a program I compiled with -g flag.
Is this a MacPorts specific bug or is there a problem with GCC 4.9?
Thanks
It is not a MacPorts specific issue. MacPorts doesn't really do much to customize the gcc ports.
If you want to create a dSYM bundle and strip your executable, you should just do something like:
gcc-mp-4.9 -g3 -c example.c
gcc-mp-4.9 example.o -o example
dsymutil --out example.dSYM example
strip -S -x example
As a side note, if you want C++11/C++14 support, I suggest you use the clang-3.5 port as that will allow you to use libc++ from the system instead of libstdc++ from MacPorts (and allow you to use system and MacPorts C++ libraries rather than just the STL). Also, lldb is really the preferred debugger for OS X these days.
I had to upgrade my gcc version to utilize the new C++11 standards. After following the instructions at http://ask.xmodulo.com/upgrade-gcc-centos.html . I started getting the error "/bin/sh: g++: command not found" when I try to build my project. How can I fix this? It looks like gcc installed fine by looking at the below output.
gcc --version
gcc (GCC) 4.7.2 20121015 (Red Hat 4.7.2-5)
G++ appears to be not installed. Find how to install gcc in your OS. After this, you have to make Eclipse find g++. I recommend to you, to install CDT plugins. They have many ready tools for C/C++ programming and it is fully compatible with gcc toolset.