Sed substitute recursively - regex

echo ddayaynightday | sed 's/day//g'
It ends up daynight
Is there anyway to make it substitute until no more match ?

My preferred form, for this case:
echo ddayaynightday | sed -e ':loop' -e 's/day//g' -e 't loop'
This is the same as everyone else's, except that it uses multiple -e commands to make the three lines and uses the t construct—which means "branch if you did a successful substitution"—to iterate.

This might work for you:
echo ddayaynightday | sed ':a;s/day//g;ta'
night

The g flag deliberately doesn't re-match against the substituted portion of the string. What you'll need to do is a bit different. Try this:
echo ddayaynightday | sed $':begin\n/day/{ s///; bbegin\n}'
Due to BSD Sed's quirkiness the embedded newlines are required. If you're using GNU Sed you may be able to get away with
sed ':begin;/day/{ s///; bbegin }'

with bash:
str=ddayaynightday
while true; do tmp=${str//day/}; [[ $tmp = $str ]] && break; str=$tmp; done
echo $str

The following works:
$ echo ddayaynightday | sed ':loop;/day/{s///g;b loop}'
night
Depending on your system, the ; may not work to separate commands, so you can use the following instead:
echo ddayaynightday | sed -e ':loop' -e '/day/{s///g
b loop}'
Explanation:
:loop # Create the label 'loop'
/day/{ # if the pattern space matches 'day'
s///g # remove all occurrence of 'day' from the pattern space
b loop # go back to the label 'loop'
}
If the b loop portion of the command is not executed, the current contents of the pattern space are printed and the next line is read.

Ok, here they're: while and strlen in bash.
Using them one may implement my idea:
Repeat until its length will stop changing.
There's neither way to set flag nor way to write such regex, to "substitute until no more match".

Related

sed: struggling with substitution and regex for ^*=

I am running a linux bash script. From stout lines like: /gpx/trk/name=MyTrack1, I want to keep only the end of line after =.
I am struggling to understand why the following sed command is not working as I expect:
echo "/gpx/trk/name=MyTrack1" | sed -e "s/^*=//"
(I also tried)
echo "/gpx/trk/name=MyTrack1" | sed -e "s/^*\=//"
The return is always /gpx/trk/name=MyTrack1 and not MyTrack1
An even simpler way if this is the only structure you are concerned about:
echo "/gpx/trk/name=MyTrack1" | cut -d = -f 2
Simply try:
echo "/gpx/trk/name=MyTrack1" | sed 's/.*=//'
Solution 2nd: With another sed.
echo "/gpx/trk/name=MyTrack1" | sed 's/\(.*=\)\(.*\)/\2/'
Explanation: As per OP's request adding explanation for this code here:
s: Means telling sed to do substitution operation.
\(.*=\): Creating first place in memory to keep this regex's value which tells sed to keep everything in 1st place of memory from starting to till = so text /gpx/trk/name= will be in 1 place.
\(.*\): Creating 2nd place in memory for sed telling it to keep everything now(after the match of 1st one, so this will start after =) and have value in it as MyTrack1
/\2/: Now telling sed to substitute complete line with only 2nd memory place holder which is MyTrack1
Solution 3rd: Or with awk considering that your Input_file is same as shown samples.
echo "/gpx/trk/name=MyTrack1" | awk -F'=' '{print $2}'
Solution 4th: With awk's match.
echo "/gpx/trk/name=MyTrack1" | awk 'match($0,/=.*$/){print substr($0,RSTART+1,RLENGTH-1)}'
$ echo "/gpx/trk/name=MyTrack1" | sed -e "s/^.*=//"
MyTrack1
The regular expression ^.*= matches anything up to and including the last = in the string.
Your regular expression ^*= would match the literal string *= at the start of a string, e.g.
$ echo "*=/gpx/trk/name=MyTrack1" | sed -e "s/^*=//"
/gpx/trk/name=MyTrack1
The * character in a regular expression usually modifies the immediately previous expression so that zero or more of it may be matched. When * occurs at the start of an expression on the other hand, it matches the character *.
Not to take you off the sed track, but this is easy with Bash alone:
$ echo "$s"
/gpx/trk/name=MyTrack1
$ echo "${s##*=}"
MyTrack1
The ##*= pattern removes the maximal pattern from the beginning of the string to the last =:
$ s="1=2=3=the rest"
$ echo "${s##*=}"
the rest
The equivalent in sed would be:
$ echo "$s" | sed -E 's/^.*=(.*)/\1/'
the rest
Where #*= would remove the minimal pattern:
$ echo "${s#*=}"
2=3=the rest
And in sed:
$ echo "$s" | sed -E 's/^[^=]*=(.*)/\1/'
2=3=the rest
Note the difference in * in Bash string functions vs a sed regex:
The * in Bash (in this context) is glob like - itself means 'any character'
The * in a regex refers to the previous pattern and for 'any character' you need .*
Bash has extensive string manipulation functions. You can read about Bash string patterns in BashFAQ.

replace string with underscore and dots using sed or awk

I have a bunch of files with filenames composed of underscore and dots, here is one example:
META_ALL_whrAdjBMI_GLOBAL_August2016.bed.nodup.sortedbed.roadmap.sort.fgwas.gz.r0-ADRL.GLND.FET-EnhA.out.params
I want to remove the part that contains .bed.nodup.sortedbed.roadmap.sort.fgwas.gz. so the expected filename output would be META_ALL_whrAdjBMI_GLOBAL_August2016.r0-ADRL.GLND.FET-EnhA.out.params
I am using these sed commands but neither one works:
stringZ=META_ALL_whrAdjBMI_GLOBAL_August2016.bed.nodup.sortedbed.roadmap.sort.fgwas.gz.r0-ADRL.GLND.FET-EnhA.out.params
echo $stringZ | sed -e 's/\([[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.\)//g'
echo $stringZ | sed -e 's/\[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.[[:lower:]]\.//g'
Any solution is sed or awk would help a lot
Don't use external utilities and regexes for such a simple task! Use parameter expansions instead.
stringZ=META_ALL_whrAdjBMI_GLOBAL_August2016.bed.nodup.sortedbed.roadmap.sort.fgwas.gz.r0-ADRL.GLND.FET-EnhA.out.params
echo "${stringZ/.bed.nodup.sortedbed.roadmap.sort.fgwas.gz}"
To perform the renaming of all the files containing .bed.nodup.sortedbed.roadmap.sort.fgwas.gz, use this:
shopt -s nullglob
substring=.bed.nodup.sortedbed.roadmap.sort.fgwas.gz
for file in *"$substring"*; do
echo mv -- "$file" "${file/"$substring"}"
done
Note. I left echo in front of mv so that nothing is going to be renamed; the commands will only be displayed on your terminal. Remove echo if you're satisfied with what you see.
Your regex doesn't really feel too much more general than the fixed pattern would be, but if you want to make it work, you need to allow for more than one lower case character between each dot. Right now you're looking for exactly one, but you can fix it with \+ after each [[:lower:]] like
printf '%s' "$stringZ" | sed -e 's/\([[:lower:]]\+\.[[:lower:]]\+\.[[:lower:]]\+\.[[:lower:]]\+\.[[:lower:]]\+\.[[:lower:]]\+\.[[:lower:]]\+\.\)//g'
which with
stringZ="META_ALL_whrAdjBMI_GLOBAL_August2016.bed.nodup.sortedbed.roadmap.sort.fgwas.gz.r0-ADRL.GLND.FET-EnhA.out.params"
give me the output
META_ALL_whrAdjBMI_GLOBAL_August2016.r0-ADRL.GLND.FET-EnhA.out.params
Try this:
#!/bin/bash
for line in $(ls -1 META*);
do
f2=$(echo $line | sed 's/.bed.nodup.sortedbed.roadmap.sort.fgwas.gz//')
mv $line $f2
done

Regex Pattern Replace

So i wanted to replace the following
<duration>89</duration>
with
(Expected Result or at least Shoud become this:)
\n<duration>89</duration>
so basically replace every < with \n< in regex So i figured.
sed -e 's/<[^/]/\n</g'
Only problem it obviously outputs
\n<uration>89</duration>
Which brings me to my question. How can i tell regex to mach for a character which follows < (is not /) but stop it from replacing it so i can get my expected result?
Try this:
sed -e 's/<[^/]/\\n&/g' file
or
sed -e 's/<[^/]/\n&/g' file
&: refer to that portion of the pattern space which matched
It can be nicely done with awk:
echo '<duration>89</duration>' | awk '1' RS='<' ORS='\n<'
RS='<' sets the input record separator to<`
ORS='\n<' sets the output record separator to\n<'
1 always evaluates to true. An true condition without an subsequent action specified tells awk to print the record.
echo "<duration>89</duration>" | sed -E 's/<([^\/])/\\n<\1/g'
should do it.
Sample Run
$ echo "<duration>89</duration>
> <tag>Some Stuff</tag>"| sed -E 's/<([^\/])/\\n<\1/g'
\n<duration>89</duration>
\n<tag>Some Stuff</tag>
Your statement is kind of correct with one small problem. sed replaces entire pattern, even any condition you have put. So, [^/] conditional statement also gets replaced. What you need is to preserve this part, hence you can try any of the following two statements:
sed -e 's/<\([^/]\)/\n<\1/g' file
or as pointed by Cyrus
sed -e 's/<[^/]/\n&/g' file
Cheers!
echo '<duration>89</duration>' | awk '{sub(/<dur/,"\\n<dur")}1'
\n<duration>89</duration>

regexp (sed) suppress "no match" output

I'm stuck on that and can't wrap my head around it: How can I tell sed to return the value found, and otherwise shut up?
It's really beyond me: Why would sed return the whole string if he found nothing? Do I have to run another test on the returned string to verify it? I tried using "-n" from the (very short) man page but it effectively suppresses all output, including matched strings.
This is what I have now :
echo plop-02-plop | sed -e 's/^.*\(.\)\([0-9][0-9]\)\1.*$/\2/'
which returns
02 (and that is fine and dandy, thank you very much), but:
echo plop-02plop | sed -e 's/^.*\(.\)\([0-9][0-9]\)\1.*$/\2/'
returns
plop-02plop (when it should return this = "" nothing! Dang, you found nothing so be quiet!
For crying out loud !!)
I tried checking for a return value, but this failed too ! Gasp !!
$ echo plop-02-plop | sed -e 's/^.*\(.\)\([0-9][0-9]\)\1.*$/\2/' ; echo $?
02
0
$ echo plop-02plop | sed -e 's/^.*\(.\)\([0-9][0-9]\)\1.*$/\2/' ; echo $?
plop-02plop
0
$
This last one I cannot even believe. Is sed really the tool I should be using? I want to extract a needle from a haystack, and I want a needle or nothing..?
sed by default prints all lines.
What you want to do is
/patt/!d;s//repl/
IOW delete lines not matching your pattern, and if they match, extract particular element from it, giving capturing group number for instance. In your case it will be:
sed -e '/^.*\(.\)\([0-9][0-9]\)\1.*$/!d;s//\2/'
You can also use -n option to suppress echoing all lines. Then line is printed only when you explicitly state it. In practice scripts using -n are usually longer and more cumbersome to maintain. Here it will be:
sed -ne 's/^.*\(.\)\([0-9][0-9]\)\1.*$/\2/p'
There is also grep, but your example shows, why sed is sometimes better.
Perhaps you can use egrep -o?
input.txt:
blooody
aaaa
bbbb
odor
qqqq
E.g.
sehe#meerkat:/tmp$ egrep -o o+ input.txt
ooo
o
o
sehe#meerkat:/tmp$ egrep -no o+ input.txt
1:ooo
4:o
4:o
Of course egrep will have slightly different (better?) regex syntax for advanced constructs (back-references, non-greedy operators). I'll let you do the translation, if you like the approach.

Return a regex match in a Bash script, instead of replacing it

I just want to match some text in a Bash script. I've tried using sed but I can't seem to make it just output the match instead of replacing it with something.
echo -E "TestT100String" | sed 's/[0-9]+/dontReplace/g'
Which will output TestTdontReplaceString.
Which isn't what I want, I want it to output 100.
Ideally, it would put all the matches in an array.
edit:
Text input is coming in as a string:
newName()
{
#Get input from function
newNameTXT="$1"
if [[ $newNameTXT ]]; then
#Use code that im working on now, using the $newNameTXT string.
fi
}
You could do this purely in bash using the double square bracket [[ ]] test operator, which stores results in an array called BASH_REMATCH:
[[ "TestT100String" =~ ([0-9]+) ]] && echo "${BASH_REMATCH[1]}"
echo "TestT100String" | sed 's/[^0-9]*\([0-9]\+\).*/\1/'
echo "TestT100String" | grep -o '[0-9]\+'
The method you use to put the results in an array depends somewhat on how the actual data is being retrieved. There's not enough information in your question to be able to guide you well. However, here is one method:
index=0
while read -r line
do
array[index++]=$(echo "$line" | grep -o '[0-9]\+')
done < filename
Here's another way:
array=($(grep -o '[0-9]\+' filename))
Pure Bash. Use parameter substitution (no external processes and pipes):
string="TestT100String"
echo ${string//[^[:digit:]]/}
Removes all non-digits.
I Know this is an old topic but I came her along same searches and found another great possibility apply a regex on a String/Variable using grep:
# Simple
$(echo "TestT100String" | grep -Po "[0-9]{3}")
# More complex using lookaround
$(echo "TestT100String" | grep -Po "(?i)TestT\K[0-9]{3}(?=String)")
With using lookaround capabilities search expressions can be extended for better matching. Where (?i) indicates the Pattern before the searched Pattern (lookahead),
\K indicates the actual search pattern and (?=) contains the pattern after the search (lookbehind).
https://www.regular-expressions.info/lookaround.html
The given example matches the same as the PCRE regex TestT([0-9]{3})String
Use grep. Sed is an editor. If you only want to match a regexp, grep is more than sufficient.
using awk
linux$ echo -E "TestT100String" | awk '{gsub(/[^0-9]/,"")}1'
100
I don't know why nobody ever uses expr: it's portable and easy.
newName()
{
#Get input from function
newNameTXT="$1"
if num=`expr "$newNameTXT" : '[^0-9]*\([0-9]\+\)'`; then
echo "contains $num"
fi
}
Well , the Sed with the s/"pattern1"/"pattern2"/g just replaces globally all the pattern1s to pattern 2.
Besides that, sed while by default print the entire line by default .
I suggest piping the instruction to a cut command and trying to extract the numbers u want :
If u are lookin only to use sed then use TRE:
sed -n 's/.*\(0-9\)\(0-9\)\(0-9\).*/\1,\2,\3/g'.
I dint try and execute the above command so just make sure the syntax is right.
Hope this helped.
using just the bash shell
declare -a array
i=0
while read -r line
do
case "$line" in
*TestT*String* )
while true
do
line=${line#*TestT}
array[$i]=${line%%String*}
line=${line#*String*}
i=$((i+1))
case "$line" in
*TestT*String* ) continue;;
*) break;;
esac
done
esac
done <"file"
echo ${array[#]}