C++: compilation error - "no .eh_frame_hdr table will be created" - c++

I'm supposed to use a data analysis program for a physics experiment. I can't get it to compile though.
The code is old, not really compatible with current GCC-versions from what I can find. To make things a bit more time-comsuming, I got the code from a guy who had modified all the makefiles to make it compile on Mac. I have no C++-experience, but with man-pages, Google and patience I have fixed a lot of errors on the way, but I'm stuck on this one, even after a week of tries and googling.
I believe the relevant error message is the following:
/usr/bin/ld: error in /home/daniel/skola/exjobb/miniballscripts
/lib/libCommandLineInterface.so(.eh_frame); no .eh_frame_hdr table will be created.`
What can be the cause, and what can be the remedy?
libCommandLineInterface.so was compiled by me before, without any apparent error messages:
$ make
g++ -g2 -O2 -I./ -c CommandLineInterface.cc -o CommandLineInterface.o
g++ -g -Wl -o /home/daniel/skola/exjobb/miniballscripts/lib/libCommandLineInterface.so
CommandLineInterface.o -lm -L/home/daniel/skola/exjobb/miniballscripts/lib -lgcc -lc
Done
My g++-version is g++ (Ubuntu 4.4.3-4ubuntu5) 4.4.3, amd64.
http://tinypaste.com/9eee9 - make output
http://tinypaste.com/ddbde - GNUmakefile
As I said, I have no experience with C++, so maybe my naive Makefile modifications have destroyed something. My lack of experience also makes me not really knowing what other information is needed to help me, but I'll be glad to reply.

Looks like you have forgotten the -shared command line option when you generate the libCommandLineInterface.so file. That would explain those multiple definition errors. If the linker thinks that the file it is generating is an executable (instead of a dynamic library), then it would link in the startup code, etc. When you try to use this .so file, those symbols coming in from the startup code will clash with those that are being added to the executable that uses the dynamic library.
It is possible that the libTransfer.so errors are related to the same flag being omitted. A shared library is allowed to have dangling references (that get resolved when the library is used), but an executable has to have all the symbols resolved at link time. This is probably an oversimplification of how things are, but I never needed to get into more details on dynamic linking in linux. :) Anyhow, adding -shared option may solve the undefined reference errors as well.

The linking errors of concern start with:
[...]/lib/libCommandLineInterface.so: In function `_start':
(.text+0x0): multiple definition of `_start'
/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crt1.o:(.text+0x0): first defined here
[...]/lib/libCommandLineInterface.so: In function `_fini':
(.fini+0x0): multiple definition of `_fini'
/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crti.o:(.fini+0x0): first defined here
[...]/lib/libCommandLineInterface.so:(.rodata+0x0): multiple definition of `_IO_stdin_used'
/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crt1.o:(.rodata.cst4+0x0): first defined here
[...]/lib/libCommandLineInterface.so: In function `__data_start':
(.data+0x0): multiple definition of `__data_start'
/usr/lib/gcc/x86_64-linux-gnu/4.4.3/../../../../lib/crt1.o:(.data+0x0): first defined here
[...]/lib/libCommandLineInterface.so: In function `__data_start':
(.data+0x8): multiple definition of `__dso_handle'
/usr/lib/gcc/x86_64-linux-gnu/4.4.3/crtbegin.o:(.data+0x0): first defined here
[...]/lib/libCommandLineInterface.so: In function `_edata':
(*ABS*+0x607130): multiple definition of `__bss_start'
[...]/lib/libCommandLineInterface.so: In function `_end':
(*ABS*+0x6073b8): multiple definition of `_end'
[...]/lib/libCommandLineInterface.so: In function `_edata':
(*ABS*+0x607130): multiple definition of `_edata'
[...]/lib/libCommandLineInterface.so: In function `main':
/home/daniel/skola/exjobb/miniballscripts/Common/CommandLineInterface.cc:6: multiple definition of `main'
The symbols that are multiply defined are 'standard' on Unix - and I've never needed to bother with them myself on Mac either, though I don't do GUI programming there.
You need to look at libCommandLineInterface.cc with a very prejudiced attitude and decide whether it provides anything that you need. You might be able to remove it altogether. If it contains some stuff you do need, you will need to cauterize the material that defines _start, and _end and main and so on.
You are also going to have to worry about the missing vtables:
[...]/libTransfer.so: undefined reference to `vtable for Annular'
[...]/libTransfer.so: undefined reference to `ROOT::GenerateInitInstance(Barrel const*)'
[...]/libTransfer.so: undefined reference to `ROOT::GenerateInitInstance(Annular const*)'
[...]/libTransfer.so: undefined reference to `vtable for Barrel'
[...]/libTransfer.so: undefined reference to `vtable for Crystal'
[...]/libTransfer.so: undefined reference to `vtable for Germanium'

It's solved. The eh_frame_hdr-problem was solved by this thread. The undefined references was solved by deleting libTransfer.so after the first make, and then directly afterwards running make again. Don't ask me how, but that made it compile.

Related

Compiling Fortran netCDF programs on Ubuntu

Ok, newb question here.
I'm trying to compile simple_xy_wr.f90 -- a netCDF example program -- using gfortran on Ubuntu, and I must be doing something pretty silly; I don't have much experince compiling Fortran.
First, I've got the libnetcdf-dev package installed, which includes files like
/usr/lib/libnetcdf.a
/usr/lib/libnetcdff.a
/usr/include/netcdf.mod
So, I've tried to compile the code with (various command like)
f95 -o xy -I/usr/include/ -L/usr/lib/ -lnetcdff -lnetcdf simple_xy_wr.f90
and I get the following output
/tmp/ccE6g7sr.o: In function `check.1847':
simple_xy_wr.f90:(.text+0x72): undefined reference to `__netcdf_MOD_nf90_strerror'
/tmp/ccE6g7sr.o: In function `MAIN__':
simple_xy_wr.f90:(.text+0x284): undefined reference to `__netcdf_MOD_nf90_create'
simple_xy_wr.f90:(.text+0x2b6): undefined reference to `__netcdf_MOD_nf90_def_dim'
simple_xy_wr.f90:(.text+0x2e8): undefined reference to `__netcdf_MOD_nf90_def_dim'
simple_xy_wr.f90:(.text+0x432): undefined reference to `__netcdf_MOD_nf90_def_var_manydims'
simple_xy_wr.f90:(.text+0x468): undefined reference to `__netcdf_MOD_nf90_enddef'
simple_xy_wr.f90:(.text+0x4aa): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'
simple_xy_wr.f90:(.text+0x4cb): undefined reference to `__netcdf_MOD_nf90_close'
collect2: error: ld returned 1 exit status
I think that I'm including the right libraries. E.g. it seems that __netcdf_MOD_nf90_strerror should be there:
$ nm /usr/lib/libnetcdff.a | grep __netcdf_MOD_nf90_strerror
000000000004a100 T __netcdf_MOD_nf90_strerror
What am I doing wrong?
(FWIW, a few relevant references I've looked at are below.
undefined reference using netcdf library
Compiling problems with gfortran and NETCDF
Compiling and Running Fortran Programs - a basic guide
)
Ordering of object files and archives on the linker command line is very important on Unix systems since the default linker behaviour is to search for symbol definitions only in archives that follow the object file or archive, where an unresolved reference was found, referred to single pass linking.
This means that if your code references __netcdf_MOD_nf90_strerror, then the archive that contains the definition of this symbol (libnetcdff.a) must appear after the list of object files from your program. libnetcdff.a itself references symbols from the C library libnetcdf.a, hence it must be linked after libnetcdff.a. So the correct link order is:
/tmp/ccE6g7sr.o libnetcdff.a libnetcdf.a
where /tmp/ccE6g7sr.o is the temporary object file that the assembler produces from the compiled source file. The correct command line to compile your code is then:
f95 -o xy -I/usr/include/ simple_xy_wr.f90 -lnetcdff -lnetcdf
In this case the linker is not called directly, rather the compiler does it. GCC compilers pass all link-related things in the same order to an intermediate utility called collect2 which then calls the actual linker ld.
Note that if shared object versions of the netCDF library archives are also present (i.e. there are libnetcdff.so and libnetcdf.so), then the linker would prefer them to the static archives (unless static linking is enabled with the -static option) and the final link phase would be handled to the run-time link editor (RTLD) (/lib64/ld-linux-x86-64.so.2 on Ubuntu). In this case the same command line as in your question would actually succeed without link errors, despite the fact that both libraries are positioned before the code that references them, as the missing symbol references would be resolved by the RTLD while it is loading the executable file.
In Ubuntu 12.10, the order of the libraries is the trick (as Hristo suggested):
angelv#palas:~$ gfortran -o xy -I/usr/include/ -L/usr/lib/ -lnetcdf -lnetcdff simple_xy_wr.f90
/tmp/ccj95anF.o: In function `check.1847':
simple_xy_wr.f90:(.text+0x72): undefined reference to `__netcdf_MOD_nf90_strerror'
/tmp/ccj95anF.o: In function `MAIN__':
simple_xy_wr.f90:(.text+0x284): undefined reference to `__netcdf_MOD_nf90_create'
simple_xy_wr.f90:(.text+0x2b6): undefined reference to `__netcdf_MOD_nf90_def_dim'
simple_xy_wr.f90:(.text+0x2e8): undefined reference to `__netcdf_MOD_nf90_def_dim'
simple_xy_wr.f90:(.text+0x432): undefined reference to `__netcdf_MOD_nf90_def_var_manydims'
simple_xy_wr.f90:(.text+0x468): undefined reference to `__netcdf_MOD_nf90_enddef'
simple_xy_wr.f90:(.text+0x4aa): undefined reference to `__netcdf_MOD_nf90_put_var_2d_fourbyteint'
simple_xy_wr.f90:(.text+0x4cb): undefined reference to `__netcdf_MOD_nf90_close'
collect2: error: ld returned 1 exit status
angelv#palas:~$ gfortran -o xy -I/usr/include/ simple_xy_wr.f90 -L/usr/lib/ -lnetcdf -lnetcdff
angelv#palas:~$ ./xy
0 12 24 36
*** SUCCESS writing example file simple_xy.nc!

undefined references in libpthread and libc

I'm having trouble compiling some examples in a odbc sdk. After some time mingling with the library order, I somehow managed to get the number of undefined references to just a handful of them.
Sadly, I can't figure out how to get rid of the remaining ones. Here's the command that's failing:
g++ -Wall -z defs -m64 -DSIMBA -D_REENTRANT -fPIC -O0 -g -shared Common/TabbedUnicodeFileReader_Linux_x8664_debug.cpp.o Core/QSConnection_Linux_x8664_debug.cpp.o Core/QSDriver_Linux_x8664_debug.cpp.o Core/QSEnvironment_Linux_x8664_debug.cpp.o Core/QSStatement_Linux_x8664_debug.cpp.o DataEngine/QSDataEngine_Linux_x8664_debug.cpp.o DataEngine/QSMetadataHelper_Linux_x8664_debug.cpp.o DataEngine/QSTable_Linux_x8664_debug.cpp.o DataEngine/QSTableUtilities_Linux_x8664_debug.cpp.o DataEngine/QSTypeInfoMetadataSource_Linux_x8664_debug.cpp.o Common/QSTableMetadataFile_Unix_Linux_x8664_debug.cpp.o Common/QSUtilities_Unix_Linux_x8664_debug.cpp.o Main_Unix_Linux_x8664_debug.cpp.o -Wl,--no-undefined -Wl,--no-allow-shlib-undefined -Wl,--whole-archive,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libSimbaDSI_debug.a,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libSimbaSupport_debug.a,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libAEProcessor_debug.a,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libCore_debug.a,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libDSIExt_debug.a,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libExecutor_debug.a,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libParser_debug.a,/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//Lib/Linux_x8664/libSimbaODBC_debug.a -Wl,--no-whole-archive -Wl,--soname=../Bin/Linux_x8664/libQuickstart_debug.so -L/home/hector/Downloads/SimbaEngineSDK/9.0/DataAccessComponents//ThirdParty/icu/Linux_x8664/lib -licuuc_simba64 -licudata_simba64 -licui18n_simba64 -lpthread -lm -lc -ldl -Wl,--version-script=exports_Linux.map -o ../Bin/Linux_x8664/libQuickstart_debug.so
Edit: Missing symbols
/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/libdl.so: undefined reference to `_dl_rtld_di_serinfo#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `_dl_allocate_tls_init#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `__libc_stack_end#GLIBC_2.2.5'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `_dl_get_tls_static_info#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `__tls_get_addr#GLIBC_2.3'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `_dl_deallocate_tls#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `_rtld_global#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libc.so.6: undefined reference to `_dl_argv#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libc.so.6: undefined reference to `__libc_enable_secure#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `_dl_allocate_tls#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `_rtld_global_ro#GLIBC_PRIVATE'
/lib/x86_64-linux-gnu/libpthread.so.0: undefined reference to `_dl_make_stack_executable#GLIBC_PRIVATE'
Fixed:
Removing -Wl,--no-allow-shlib-undefined seemed to do the trick. The built shared library seems to work perfectly.
I had a similar issue with a completely separate application. The following compile time flag worked for me:
-B/usr/lib/gold-ld/
which i found at:
https://bugs.launchpad.net/ubuntu/+source/binutils/+bug/885927
I'm using gcc (Ubuntu/Linaro 4.6.1-9ubuntu3) 4.6.1 I was trying to compile with lto.
You do a very common newbie mistake. you place the libraries to link with in the middle or the beginning of the command line. The linker GCC uses needs dependencies in reverse order. That means if you have an source/object file S using a function in library L, the file A has to be before the library L on the command line.
In short, put the libraries (-lm -lc -ldl) last on the command line instead.
If linker fails to resolve all referenced symbols then this can be a result of wrong order of provided libraries. If you are not sure what is the correct order then put archives in "--start-group archives --end-group" which according to ld manual will force linker to search the specified archives repeatedly until no new undefined references are created. But pay attention to a performance cost.
The OP mentioned "Removing -Wl,--no-allow-shlib-undefined" helped.
In my case I had to add the opposite:
-Wl,--allow-shlib-undefined
(Everything was working fine with an older version of GCC)

How to use GLEW with MinGW [duplicate]

This question already has answers here:
What is an undefined reference/unresolved external symbol error and how do I fix it?
(39 answers)
Closed 7 years ago.
I was trying to use glew32.lib file to link in my project, than I compile Glew source by myself to get glew.a file. Now, I have these link errors in my project:
g++ -o Chapter10(OpenCLTest).exe src\Chapter10(OpenCLTest).o -lopengl32 -lglew -lglut32 -lglu32 -lopencl
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x167): undefined reference to `_imp____glewBindBuffer'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x39a): undefined reference to `_imp__glewInit'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x3a7): undefined reference to `_imp__glewIsSupported'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x48a): undefined reference to `_imp____glewGenBuffers'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x495): undefined reference to `_imp____glewBindBuffer'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x4dd): undefined reference to `_imp____glewBufferData'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x50b): undefined reference to `_imp____glewGetBufferParameteriv'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x1d67): undefined reference to `_imp____glewBindBuffer'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x1d7f): undefined reference to `_imp____glewDeleteBuffers'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x1d95): undefined reference to `_imp____glewBindBuffer'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x1dad): undefined reference to `_imp____glewDeleteBuffers'
src\Chapter10(OpenCLTest).o:Chapter10(OpenCLTest).cpp:(.text+0x2078): undefined reference to `_imp____glewBindBuffer'
collect2: ld returned 1 exit status
It is good to solve this problem but by the way I want to ask are there any other opengl implementaions of gl extentions?
I'm afraid you can't use glew.lib with g++ (because .lib is a proprietary Microsoft format). These errors you get are missing function entry points, meaning that you didn't compile GLEW correctly (the required functions are not exported in your .so - need to know more details in order to be able to solve this issue).
As for the other part of the question, you can try GLEH. It is still in the development phase and may need some tweaking to work for you, but we've been using it quite successfuly in linux so it shouldn't be too bad.
(I know this is a bit late, but I figured it might solve someone else's problem, so) I had a very similar problem compiling a program that linked to GLEW dynamically. It turns out that I had overlooked the libglew32.dll.a file - that also needed to be present (in addition to libglew32.a and glew32.dll that I had previously copied to my project folder.)
You could try GLee which essentially does the same thing as GLEW.
Strange nobody has said anything about this. By default on Windows, the GLEW headers use declspec(dllimport) for all of the external functions, which mangles all of their names. This is why all of the missing external symbol names all have _imp____ at the front.
If you wan't to use a static build of GLEW (you mentioned something about libglew.a), define GLEW_STATIC during the build of GLEW and during the build of your application. This will unmangle the names for static linking.
If you want to link to a shared library version of GLEW, make sure to build GLEW with GLEW_BUILD. I'm not sure if this is necessary with gcc but it is if the library is built with MSVC.
Furthermore, the GNU toolchain actually supports Microsoft's .lib format for linking. source
You may find it easiest to just compile GLEW yourself or even include it in your project. It is only one source file and a few headers. To compile the library manually, use something along the lines of gcc -shared -o libGLEW.dll -Wl,--out-implib=libGLEW.dll.a -O2 -DGLEW_BUILD glew.c. To get the static version use something like gcc -c -O2 -DGLEW_STATIC glew.c instead.

c++ code using libnet not compiling

I'm trying to compile my libnet script and am getting this error:
[root#whyme]# gcc -Wall `libnet-config --defines` mysocket.cc -o mysocket `libnet-config --libs` -lpcap -lnet
/tmp/ccUPbuVg.o: In function `main':
mysocket.cc:(.text+0x1e): undefined reference to `net_init'
mysocket.cc:(.text+0x2a): undefined reference to `net_loadconfig'
mysocket.cc:(.text+0x35): undefined reference to `net_detectdrivers'
mysocket.cc:(.text+0x40): undefined reference to `net_initdrivers'
mysocket.cc:(.text+0x54): undefined reference to `net_openconn'
mysocket.cc:(.text+0x83): undefined reference to `net_listen'
mysocket.cc:(.text+0xbe): undefined reference to `net_poll_listen'
mysocket.cc:(.text+0xd2): undefined reference to `net_closeconn'
mysocket.cc:(.text+0xf1): undefined reference to `net_receive_rdm'
mysocket.cc:(.text+0x11b): undefined reference to `net_query_rdm'
I didn't paste my code because this looks like it's related to linking the objects.
I'm able to compile & execute this source file with your exact command (changing only the filenames): https://github.com/repolho/Libnet-1.1-tutorial-examples/blob/master/01_init.c
I therefore suspect the problem is in your source after all. Most libnet function names are of the form libnet_[funcname], but in your linker errors I see names of the form net_[funcname].
I also note that you've manually inserted -lnet. On my system, -lnet is the entire output of libnet-config --libs, so if you do need it specifying it manually is redundant. It's not harmful, but you can type fewer characters next time. :)
Could you check what is returned by "libnet-config --libs" ?
It might be returning something wrong, thus preventing the linker to find the libnet library. Make sure that the part saying "-L XXXX" points to the directory where libnet library is located.

Linking error when upgrading from lua 4.0.1 to 5.1.4

I'm working on a really old source code (compiled in Red Hat). Before it had lua-4.0.1 so I just compiled the latest lua (lua-5.1.4) and installed it in the same directory as the old one. The implementation isn't very big so there wasn't much to change except a few function names and I had to include "lauxlib.h" to get it to compile. It compiles without any problems but it gives these linking errors.
/usr/local/lib/liblua.a(loadlib.o): In function `ll_load':
loadlib.o(.text+0x19): undefined reference to `dlopen'
loadlib.o(.text+0x2a): undefined reference to `dlerror'
/usr/local/lib/liblua.a(loadlib.o): In function `ll_sym':
loadlib.o(.text+0x52): undefined reference to `dlsym'
loadlib.o(.text+0x63): undefined reference to `dlerror'
/usr/local/lib/liblua.a(loadlib.o): In function `ll_unloadlib':
loadlib.o(.text+0x8): undefined reference to `dlclose'
Basically all the paths are correct but I use the same flags for the compiler as the old one, I havent changed the makefile at all.
-static -lpthread -lnsl -lutil -ldl -lmysqlclient -llua -llualib -lz -lcppunit
The ldl flag is already there.
I just want to know things to try. Everything is appreciated. This is driving me insane.
Place -ldl at the end of the liner command. The order is important.
The linker searches for libraries fulfilling an unreferenced symbol only in libs which are standing more right on the command line. Your new liblua.a now uses dlopen and friends, while the older didn't. Since -ldl is left of -llua, the linker does not use libdl to link the lua references.