Create and use HTML full text search index (C++) - c++

I need to create a search index for a collection of HTML pages.
I have no experience in implementing a search index at all, so any general information how to build one, what information to store, how to implement advanced searches such as "entire phrase", ranking of results etc.
I'm not afraid to build it myself, though I'd be happy to reuse an existing component (or use one to get started with a prototype). I am looking for a solution accessible from C++, preferrably without requiring additional installations at runtime. The content is static (so it makes sense to aggregate search information), but a search might have to accumulate results from multiple such repositories.
I can make a few educated guesses, though: create a map word ==> pages for all (relevant) words, a rank can be assigned to the mapping by promincence (h1 > h2 > ... > <p>) and proximity to top. Advanced searches could be built on top of that: searching for phrase "homo sapiens" could list all pages that contain "homo" and "sapiens", then scan all pages returned for locations where they occur together. However, there are a lot of problematic scenarios and unanswered questions, so I am looking for references to what should be a huge amount of existing work that somehow escapes my google-fu.
[edit for bounty]
The best resource I found until now is this and the links from there.
I do have an imlementation roadmap for an experimental system, however, I am still looking for:
Reference material regarding index creation and individual steps
available implementations of individual steps
reusable implementations (with above environment restrictions)

This process is generally known as information retrieval. You'll probably find this online book helpful.
Existing libraries
Here are two existing solutions that can be fully integrated into an application without requiring a separate process (I believe both will compile with VC++).
Xapian is mature and may do much of what you need, from indexing to ranked retrieval. Separate HTML parsing would be required because, AFAIK, it does not parse html (it has a companion program Omega, which is a front end for indexing web sites).
Lucene is a index/searching Apache library in Java, with an official pre-release C version lucy, and an unofficial C++ version CLucene.
Implementing information retrieval
If the above options are not viable for some reason, here's some info on the individual steps of building and using an index. Custom solutions can go from simple to very sophisticated, depending what you need for your application. I've broken the process into 5 steps
HTML processing
Text processing
Indexing
Retrieval
Ranking
HTML Processing
There are two approaches here
Stripping The page you referred to discusses a technique generally known as stripping, which involves removing all the html elements that won't be displayed and translating others to their display form. Personally, I'd preprocess using perl and index the resulting text files. But for an integrated solution, particularly one where you want to record significance tags (e.g. <h1>, <h2>), you probably want to role your own. Here is a partial implementation of a C++ stripping routine (appears in Thinking in C++ , final version of book here), that you could build from.
Parsing A level up in complexity from stripping is html parsing, which would help in your case for recording significance tags. However, a good C++ HTML parser is hard to find. Some options might be htmlcxx (never used it, but active and looks promising) or hubbub (C library, part of NetSurf, but claims to be portable).
If you are dealing with XHTML or are willing to use an HTML-to-XML converter, you can use one of the many available XML parsers. But again, HTML-to-XML converters are hard to find, the only one I know of is HTML Tidy. In addition to conversion to XHTML, its primary purpose is to fix missing/broken tags, and it has an API that could possibly be used to integrate it into an application. Given XHTML documents, there are many good XML parsers, e.g. Xerces-C++ and tinyXML.
Text Processing
For English at least, processing text to words is pretty straight forward. There are a couple of complications when search is involved though.
Stop words are words known a priori not to provide a useful distinction between documents in the set, such as articles and propositions. Often these words are not indexed and filtered from query streams. There are many stop word lists available on the web, such as this one.
Stemming involves preprocessing documents and queries to identify the root of each word to better generalize a search. E.g. searching for "foobarred" should yield "foobarred", "foobarring", and "foobar". The index can be built and searched on roots alone. The two general approaches to stemming are dictionary based (lookups from word ==> root) and algorithm based. The Porter algorithm is very common and several implementations are available, e.g. C++ here or C here. Stemming in the Snowball C library supports several languages.
Soundex encoding One method to make search more robust to spelling errors is to encode words with a phonetic encoding. Then when queries have phonetic errors, they will still map directly to indexed words. There are a lot of implementations around, here's one.
Indexing
The map word ==> page data structure is known as an inverted index. Its inverted because its often generated from a forward index of page ==> words. Inverted indexes generally come in two flavors: inverted file index, which map words to each document they occur in, and full inverted index, which map words to each position in each document they occur in.
The important decision is what backend to use for the index, some possibilities are, in order of ease of implementation:
SQLite or Berkly DB - both of these are database engines with C++ APIs that integrated into a project without requiring a separate server process. Persistent databases are essentially files, so multiple index sets can be search by just changing the associated file. Using a DBMS as a backend simplifies index creation, updating and searching.
In memory data structure - if your using a inverted file index that is not prohibitively large (memory consumption and time to load), this could be implemented as a std::map<std::string,word_data_class>, using boost::serialization for persistence.
On disk data structure - I've heard of blazingly fast results using memory mapped files for this sort of thing, YMMV. Having an inverted file index would involve having two index files, one representing words with something like struct {char word[n]; unsigned int offset; unsigned int count; };, and the second representing (word, document) tuples with just unsigned ints (words implicit in the file offset). The offset is the file offset for the first document id for the word in the second file, count is the number of document ids associate with that word (number of ids to read from the second file). Searching would then reduce to a binary search through the first file with a pointer into a memory mapped file. The down side is the need to pad/truncate words to get a constant record size.
The procedure for indexing depends on which backend you use. The classic algorithm for generating a inverted file index (detailed here) begins with reading through each document and extending a list of (page id, word) tuples, ignoring duplicate words in each document. After all documents are processed, sort the list by word, then collapsed into (word, (page id1, page id2, ...)).
The mifluz gnu library implements inverted indexes w/ storage, but without document or query parsing. GPL, so may not be a viable option, but will give you an idea of the complexities involved for an inverted index that supports a large number of documents.
Retrieval
A very common method is boolean retrieval, which is simply the union/intersection of documents indexed for each of the query words that are joined with or/and, respectively. These operations are efficient if the document ids are stored in sorted order for each term, so that algorithms like std::set_union or std::set_intersection can be applied directly.
There are variations on retrieval, wikipedia has an overview, but standard boolean is good for many/most application.
Ranking
There are many methods for ranking the documents returned by boolean retrieval. Common methods are based on the bag of words model, which just means that the relative position of words is ignored. The general approach is to score each retrieved document relative to the query, and rank documents based on their calculated score. There are many scoring methods, but a good starting place is the term frequency-inverse document frequency formula.
The idea behind this formula is that if a query word occurs frequently in a document, that document should score higher, but a word that occurs in many documents is less informative so this word should be down weighted. The formula is, over query terms i=1..N and document j
score[j] = sum_over_i(word_freq[i,j] * inv_doc_freq[i])
where the word_freq[i,j] is the number of occurrences of word i in document j, and
inv_doc_freq[i] = log(M/doc_freq[i])
where M is the number of documents and doc_freq[i] is the number of documents containing word i. Notice that words that occur in all documents will not contribute to the score. A more complex scoring model that is widely used is BM25, which is included in both Lucene and Xapian.
Often, effective ranking for a particular domain is obtained by adjusting by trial and error. A starting place for adjusting rankings by heading/paragraph context could be inflating word_freq for a word based on heading/paragraph context, e.g. 1 for a paragraph, 10 for a top level heading. For some other ideas, you might find this paper interesting, where the authors adjusted BM25 ranking for positional scoring (the idea being that words closer to the beginning of the document are more relevant than words toward the end).
Objective quantification of ranking performance is obtained by precision-recall curves or mean average precision, detailed here. Evaluation requires an ideal set of queries paired with all the relevant documents in the set.

Depending on the size and number of the static pages, you might want to look at an already existent search solution.
"How do you implement full-text search for that 10+ million row table, keep up with the load, and stay relevant? Sphinx is good at those kinds of riddles."
I would choose the Sphinx engine for full text searching. The licence is GPL but the also have a commercial version available. It is meant to be run stand-alone [2], but it can also be embedded into applications by extracting the needed functionality (be it indexing[1], searching [3], stemming, etc).
The data should be obtained by parsing the input HTML files and transforming them to plain-text by using a parser like libxml2's HTMLparser (I haven't used it, but they say it can parse even malformed HTML). If you aren't bound to C/C++ you could take a look at Beautiful Soup.
After obtaining the plain-texts, you could store them in a database like MySQL or PostgreSQL. If you want to keep everything embedded you should go with sqlite.
Note that Sphinx doesn't work out-of-the-box with sqlite, but there is an attempt to add support (sphinx-sqlite3).

I would attack this with a little sqlite database. You could have tables for 'page', 'term' and 'page term'. 'Page' would have columns like id, text, title and url. 'Term' would have a column containing a word, as well as the primary ID. 'Page term' would have foreign keys to a page ID and a term ID, and could also store the weight, calculated from the distance from the top and the number of occurrences (or whatever you want).
Perhaps a more efficient way would be to only have two tables - 'page' as before, and 'page term' which would have the page ID, the weight, and a hash of the term word.
An example query - you want to search for "foo". You hash "foo", then query all page term rows that have that term hash. Sort by descending weight and show the top ten results.
I think this should query reasonably quickly, though it obviously depends on the number and size of the pages in question. Sqlite isn't difficult to bundle and shouldn't need an additional installation.

Ranking pages is the really tricky bit here. With a large sample of pages you can use links quite a lot in working out ranks. Other wise you need to check how words seem to be placed, and also making sure your engine doesn't get fooled by 'dictionary' pages.
Good luck!

Related

calculate nearest document using fasttext or word2vec

i have a small system of about 1000 documents.
For each document I would like to show links to the X "most similar" documents.
However, the documents are not labeled in any way, so this would be some kind of unsupervised method.
It feels like fasttext would be a good candidate, but I cant wrap my head around how to do it when its not labeled data.
I can calculate the word vectors, although what I really need is a vector for the whole document.
The Paragraph Vector algorithm, known as Doc2Vec in libraries like Python gensim, can train a model that will give a single vector for a run-of-text, and so could be useful for your need. Note, though, that typical published work uses tens-of-thousands to millions of documents. (Just 1,000 would be a very small training set.)
You can also simply average all the word-vectors of a text together (perhaps in some weighted fashion) to get a simple, crude vector for the full text, that will often somewhat work for this purpose. (You could use word-vectors from classi word2vec or FastText for this purpose.)
Similarly, if you have word-vectors but not full doc-vectors, there's a technique called "Word Mover's Distance" that calculates a word-vector-adjusted "distance" between two texts. It often does well in highlighting near-paraphrases, though it's somewhat expensive to calculate (especially for longer texts).
In some cases, just converting all docs to their "bag of words" representation – a giant vector containing counts of words used – then ranking docs by how many words they share is a good enough similarity measure.
Also, full-text index/search frameworks, like SOLR or ElasticSearch, can sometimes take full documents as queries, giving nicly ranked results. (This often works by picking the example document's most significant words, and using those words as fuzzy full-text queries against the full document set.)

How can I perform search on a lookup table without loading it in memory?

Now I have a file recording the entries of a lookup table. If the number of entries is small, I can simply load this file into an STL map and perform search in my code. But what if there are many many entries? If I do it in the way above, it may cause error such as out of memory. I'm here to listen to your advice...
P.S. I just want to perform search without loading all entries into memory.
Can Key-value database solve this problem?
You'll have to load the data from hard drive eventually but sure if a table is huge it won't fit into memory to do a linear search through it, so:
think if you can split the data into a set of files
make an index table of what file contains what entries (say the first 100 entries are in "file1_100", second hundred is in "file101_201" an so on)
using index table from step 2 locate the file to load
load the file and do a linear search
That is a really simplified scheme for a typical database management system so you may want to use one like MySQL, PostgreSQL, MsSQL, Oracle or any one of them.
If that's a study project then after you're done with the search problem, consider optimizing linear operations (by switching to something like binary search) and tables (real databases use balanced tree structures, hash tables and like).
One method would be to reorganize the data in the file into groups.
For example, let's consider a full language dictionary. Usually, dictionaries are too huge to read completely into memory. So one idea is to group the words by first letter.
In this example, you would first read in the appropriate group based on the letter. So if the word you are searching for begins with "m", you would load the "m" group into memory.
There are other methods of grouping such as word (key) length. There can also be subgroups too. In this example, you could divide the "m" group by word lengths or by second letter.
After grouping, you may want to write the data back to another file so you don't have to modify the data anymore.
There are many ways to store groups on the file, such as using a "section" marker. These would be for another question though.
The ideas here, including from #047, are to structure the data for the most efficient search, giving your memory constraints.

How to handle searches for very common keywords

I want to be able to return useful records if a user searches for a keyword that is very, very common in a solr index. For example education.
In this case, close to 99% of the records would have that word in it. So searches for this word or similar take a long time.
This is for solr on ColdFusion but I'm open to solutions which are isolated to just solr.
Right now I'm thinking of coming up with a list of stopwords and preventing those searches from taking place altogether.
If searches are taking a long time, it could be because you are not limiting the number of results that are returned. The <cfsearch> tag has a maxrows attribute, as well as a startrow attribute, that you could use to limit or paginate the data. Alternately, you could call Solr's web service directly through a <cfhttp> call:
<cfhttp url="http://localhost:8983/solr/<collection_name>/select/?q=<searchterm>&fl=*,score&rows=100&wt=json" />
Solr will return 10 rows by default; you can change this with the rows parameter. You can use the start parameter as well (note that Solr starts counting with 0 instead of 1). I believe this solution is more flexible, especially if you're using CF 9, as it allows you to paginate while sorting on a field other than score.
You can find more detail here:
http://www.thefaberfamily.org/search-smith/coldfusion-solr-tutorial/
If the user searches on just one term that is exceedingly common then you need to limit your results and advise the user that there were too many matches.
In the more general case, you want to perform a two-pass (at least) approach. Take your search terms and perform a lookup to determine their 'common-ness'. You want to filter based on least common terms first, and more common terms last.
For example, user searches serendipitous education. You identify that you have 11 matches for serendipitous, and 900000 matches for education. Thus you apply the serendipitous filter first, resulting in 11 matches. Then apply the education filter, resulting in 7 matches.
The key to fast searching is indexing and precomputed statistics. If you have statistics like this on hand you can dynamic create an optimised approach.

Improving classification results with Weka J48 and Naive Bayes Multinomial classifiers

I have been using Weka’s J48 and Naive Bayes Multinomial (NBM) classifiers upon
frequencies of keywords in RSS feeds to classify the feeds into target
categories.
For example, one of my .arff files contains the following data extracts:
#attribute Keyword_1_nasa_Frequency numeric
#attribute Keyword_2_fish_Frequency numeric
#attribute Keyword_3_kill_Frequency numeric
#attribute Keyword_4_show_Frequency numeric
…
#attribute RSSFeedCategoryDescription {BFE,FCL,F,M, NCA, SNT,S}
#data
0,0,0,34,0,0,0,0,0,40,0,0,0,0,0,0,0,0,0,0,24,0,0,0,0,13,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,BFE
0,0,0,12,0,0,0,0,0,20,0,0,0,0,0,0,0,0,0,0,25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,BFE
0,0,0,10,0,0,0,0,0,11,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,BFE
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,BFE
…
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,FCL
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,F
…
20,0,64,19,0,162,0,0,36,72,179,24,24,47,24,40,0,48,0,0,0,97,24,0,48,205,143,62,7
8,0,0,216,0,36,24,24,0,0,24,0,0,0,0,140,24,0,0,0,0,72,176,0,0,144,48,0,38,0,284,
221,72,0,72,0,SNT
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,SNT
0,0,0,0,0,0,11,0,0,0,0,0,0,0,19,0,0,0,0,0,0,0,0,0,0,10,0,0,0,0,0,0,0,0,0,0,0,0,0
,0,0,0,0,0,0,0,0,0,17,0,0,0,0,0,0,0,0,0,0,0,0,0,20,0,S
And so on: there’s a total of 570 rows where each one is contains with the
frequency of a keyword in a feed for a day. In this case, there are 57 feeds for
10 days giving a total of 570 records to be classified. Each keyword is prefixed
with a surrogate number and postfixed with ‘Frequency’.
I am using 10 fold x validation for both the J48s and NBM classifiers on a
'black box' basis. Other parameters used are also defaults, i.e. 0.25 confidence
and min number of objects is 2 for the J48s.
So far, my classification rates for an instance of varying numbers of days, date
ranges and actual keyword frequencies with both J28 and NBM results being
consistent in the 50 - 60% range. But, I would like to improve this if possible.
I have reduced the decision tree confidence level, sometimes as low as 0.1 but
the improvements are very marginal.
Can anyone suggest any other way of improving my results?
To give more information, the basic process here involves a diverse collection of RSS feeds where each one belongs to a single category.
For a given date range, e.g. 01 - 10 Sep 2011, the text of each feed's item elements are combined. The text is then validated to remove words with numbers, accents and so on, and stop words (a list of 500 stop words from MySQL is used). The remaining text is then indexed in Lucene to work out the most popular 64 words.
Each of these 64 words is then searched for in the description elements of the feeds for each day within the given date range. As part of this, the description text is also validated in the same way as the title text and again indexed by Lucene. So a popular keyword from the title such as 'declines' is stemmed to 'declin': then if any similar words are found in the description elements which also stem to 'declin', such as 'declined', the frequency for 'declin' is taken from Lucene's indexing of the word from the description elements.
The frequencies shown in the .arff file match on this basis, i.e. on the first line above, 'nasa', 'fish', 'kill' are not found in the description items of a particular feed in the BFE category for that day, but 'show' is found 34 times. Each line represents occurrences in the description items of a feed for a day for all 64 keywords.
So I think that the low frequencies are not due to stemming. Rather I see it as the inevitable result of some keywords being popular in feeds of one category, but which don't appear in other feeds at all. Hence the spareness shown in the results. Generic keywords may also be pertinent here as well.
The other possibilities are differences in the numbers of feeds per category where more feeds are in categories like NCA than S, or the keyword selection process itself is at fault.
You don't mention anything about stemming. In my opinion you could have better results if you were performing word stemming and the WEKA evaluation was based on the keyword stems.
For example let's suppose that your WEKA model is built given a keyword surfing and a new rss feed contains the word surf. There should be a match between these two words.
There are many free available stemmers for several languages.
For the English language some available options for stemming are:
The Porter's stemmer
Stemming based on the WordNet's dictionary
In case you would like to perform stemming using the WordNet's dictionary, there are libraries & frameworks that perform integration with WordNet.
Below you can find some of them:
MIT Java WordNet interface (JWI)
Rita
Java WorNet Library (JWNL)
EDITED after more information was provided
I believe that the keypoint in the specified case is the selection of the "most popular 64 words". The selected words or phrases should be keywords or keyphrases. So the challenge here is the keywords or keyphrases extraction.
There are several books, papers and algorithms written about keywords/keyphrases extraction. The university of Waikato has implemented in JAVA, a famous algorithm called Keyword Extraction Algorithm (KEA). KEA extracts keyphrases from text documents and can be either used for free indexing or for indexing with a controlled vocabulary. The implementation is distributed under the GNU General Public License.
Another issue that should be taken into consideration is the (Part of Speech)POS tagging. Nouns contain more information than the other POS tags. Therefore may you would have better results if you were checking the POS tag and the selected 64 words were mostly nouns.
In addition according to the Anette Hulth's published paper Improved Automatic Keyword Extraction Given More Linguistic Knowledge, her experiments showed that the keywords/keyphrases mostly have or are contained in one of the following five patterns:
ADJECTIVE NOUN (singular or mass)
NOUN NOUN (both sing. or mass)
ADJECTIVE NOUN (plural)
NOUN (sing. or mass) NOUN (pl.)
NOUN (sing. or mass)
In conclusion a simple action that in my opinion could improve your results is to find the POS tag for each word and select mostly nouns in order to evaluate the new RSS feeds. You can use WordNet in order to find the POS tag for each word and as I mentioned above there are many libraries on the web that perform integration with the WordNet's dictionary. Of course stemming is also essential for the classification process and has to be maintained.
I hope this helps.
Try turning off stemming altogether. The Stanford Intro to IR authors provide a rough justification of why stemming hurts, and at the very least does not help, in text classification contexts.
I have tested stemming myself on a custom multinomial naive Bayes text classification tool (I get accuracies of 85%). I tried the 3 Lucene stemmers available from org.apache.lucene.analysis.en version 4.4.0, which are EnglishMinimalStemFilter, KStemFilter and PorterStemFilter, plus no stemming, and I did the tests on small and larger training document corpora. Stemming significantly degraded classification accuracy when the training corpus was small, and left accuracy unchanged for the larger corpus, which is consistent with the Intro to IR statements.
Some more things to try:
Why only 64 words? I would increase that number by a lot, but preferably you would not have a limit at all.
Try tf-idf (term frequency, inverse document frequency). What you're using now is just tf. If you multiply this by idf you can mitigate problems arising from common and uninformative words like "show". This is especially important given that you're using so few top words.
Increase the size of the training corpus.
Try shingling to bi-grams, tri-grams, etc, and combinations of different N-grams (you're now using just unigrams).
There's a bunch of other knobs you could turn, but I would start with these. You should be able to do a lot better than 60%. 80% to 90% or better is common.

How to create an index for a collection of vectors/histograms for content based image retrieval

I'm currently writing a Bag of visual words-based image retrieval system which is similar to the Vector Space Model in text retrieval. Under this framework, each image is represented by a vector (or sometimes also called histogram in the literature). Basically each number in the vector counts the number of times each "visual word" occur in that image. If 2 images have vectors which are "close" together, this means they have many image features in common and are hence similar.
I'm basically trying to create the inverted file index for a set of such vectors. I want something that can scale from thousands (during trial stage) to hundred of thousands or million+ images so a home made data structure hack will not work.
I've looked at Lucene but apparently it only indexes text (correct me if I'm wrong) whereas in my case I want it to index numbers (i.e. the vectors themselves). I've seen cases where people convert the vector to a text document in the following way:
<3, 6, ..., 5> --> "w1 w2... wn". Basically any component that is non-zero is replaced by a textual word "w[n]" where n is the index of that number. This "document" is then passed to Lucene to index.
The problem with using this method is that the text representation for the vector does not encode how frequently the particular "word" occur so the ranking of the retrieved images would not be good.
Does anyone know of a mature indexing API that can handle vectors or perhaps suggest a different encoding scheme for my vectors so that I can continue to use Lucene? I've also looked at Lucene for Image Retrieval (LIRE) project and have tried the demo that came with it but the number of exceptions that were generated when I ran that demo makes me unsure about using it.
As for language of API, I'm open to C++ or Java.
Thanks in advance for any replies.
You can try GRire which is a Java library that implements the Bag of Visual Words model. It is my project and I am currently working on implementing an inverted index.