I have an OCaml program that worked fine on Ubuntu 16 but when recompiled and run on Ubuntu 20 I get the following error:-
$ ocamldebug ./linearizer
OCaml Debugger version 4.08.1
(ocd) r
Loading program... done.
Time: 89534
Program end.
Uncaught exception: Sys_error "Illegal seek"
(ocd) b
Time: 89533 - pc: 624888 - module Netaccel_link
No source file for Netaccel_link.
I thought this was due to missing dev libraries but:-
$ sudo apt install libocamlnet-ocaml-dev
Reading package lists... Done
Building dependency tree
Reading state information... Done
libocamlnet-ocaml-dev is already the newest version (4.1.6-1build6).
0 upgraded, 0 newly installed, 0 to remove and 20 not upgraded.
What setup step am I missing on Ubuntu 20?
This looks like a regression bug in libocamlnet and you should report an issue there or, I am a bit pessimistic that you will get any response, you can try to debug the issue yourself.
The problem that you are facing has nothing to do with missing libraries (they will be reported during installation or, if the package is broken, end up in linker errors). It may result, however, from some misconfiguration of the system. If that is true, then you're lucky as you can fix it yourself.
I will give you some advice that might help you in debugging this issue. For more, please try using discuss.ocaml.org as a more suitable media (SO doesn't favor this kind of a discussion and we might get deleted by admins).
The illegal seek exception is thrown when the seek operation is applied on a non-regular file, aka ESPIPE Unix error. So check your inputs. It could be that what was previously regarded as a file in Ubuntu is now a pipe or a socket.
Try to use ltrace or strace to pinpoint the culprit e.g.,
ltrace ./linearizer
or, if it overwhelms you, try strace
strace ./linearizer
Instead of using ocamldebug you can use plain gdb. You can use gdb's interfaces to provide the path to the source code (though most likely it won't work since ocamlnet is not compiled with debug information). I believe that it will give you a more meaningful backtrace.
Instead of using the system installation try using opam. Install your dependencies with opam and try older versions as well as newer versions of the OCaml compiler. Also, try different versions of ocamlnet. Ideally, try to reproduce the environment that used to work for you.
When nothing else works, you can use objdump -d and look at the disassembly of your binary. OCaml is using a pretty readable and intuitive name mangling scheme (<module_name>__<function_name>_<uid>), so you can easily find the source code (search for <module_name>.ml file and look for the <function_name> there)
Finally, just use docker or any other container to run your application. Consider switching from ocamlnet to something more modern and supported.
I get the following error:
Exception occurred executing command line.
Cannot run program "C:/OMNEST-5.5.1/samples/enera/lteAdvanced/enera.exe" (in directory "C:\OMNEST-5.5.1\samples\enera\lte"): CreateProcess error=2, The System cannot find the file.
I already built the project many times. I have tried to make a simplier already given example from omnet just to check if this is working. It is working. But if I copy this example in my Project it also doesn't work, so there is sth wrong with my Project file. But it seems to be correct. I just have one Connection and kept it really really simple. But it doesn't work. I have installed Omnest and inet correctly.
The most likely cause is that the EXE file cannot find the omnet++ dynamic libraries it tries the load. And the most likely reason is that you are trying to execute the executable from a CMD prompt instead of from the shell provided by the mingwenv.cmd script.
Everything you do in OMNeT++ (including starting the simulations) must be run from the mingwenv shell.
If I start gdb -tui or gdbtui with an -g flag compiled file, then set b main and press r I get the hint dl-debug.c:74 no such file or directory and the output while stepping through the source window will be written to the source window at the bottom, which also messes up this window so that is not really readable. I've already looked at askubuntu.com and Sourceware Bugzilla – Bug List and at this site but found no solution.
I also tried out sudo apt-get install ddd on another machine to go to the trouble out of the way, but then I only get authentication failure, which I also already asked without response on ask ubuntu.
Any help or hint is appreciated.
dl-debug.c:74 no such file or directory
This message means that you've tried to step into GLIBC (more precisely the dynamic loader) source, which you didn't install.
Solution: don't try to step into it, or install GLIBC source and make GDB find it (help directory).
I recently reinstalled Cygwin on my computer in order to get access to several command line elements that I was missing. I have never had previous difficulty with Cygwin, but after this reinstallation, an error message continues to appear after (almost) each command entered. For instance:
-bash-4.1$ wc m1.txt
3 [main] bash 2216 child_info_fork::abort: data segment start: parent(0x26D000) != child(0x38D000)
-bash: fork: retry: Resource temporarily unavailable
2013930 4027950 74968256 m1.txt
Generally, the command still runs (as seen above), but not always. Occasionally, the 'error' message occurs several times in a row (the initial number "3" will then change to a "4" or "2", notably if I start a second Cygwin window.
Also, as soon as I start up Cygwin, I get the following message before the prompt:
3 [main] bash 6140 child_info_fork::abort: data segment start: parent(0x26D000) != child(0x36D000)
-bash: fork: retry: Resource temporarily unavailable
-bash: fork: Resource temporarily unavailable
-bash-4.1$
At the moment, I am debating whether to uninstall/reinstall Cygwin again or just live with the error messages, but I was curious if there might be an issue that I am unaware of.
(assuming Cygwin is installed at C:\Cygwin):
Open Task Manager and close any processes that look to be Cygwin related.
Open C:\Cygwin\bin in Windows Explorer
Verify that dash.exe, ash.exe, rebase.exe, and rebaseall exist in this folder
If any of them are missing, re-run Cygwin setup and select the dash, ash, and rebase packages
right-click your C:\Cygwin folder, uncheck Read-only (if its checked), and press OK.
When an error about not being able to switch some files comes up, select "Ignore All". Wait for this process to complete.
Browse to C:\Cygwin\bin in Windows Explorer
Right click dash.exe and click "Run as Administrator". A command Prompt should appear with nothing but a $
Type /usr/bin/rebaseall -v, hit enter, and wait for the process to complete.
If you get errors about Cygwin processes running, try Step 1 again. If that still doesn't work, Restart your computer into safe mode and try these steps again.
A commenter noted that, depending on your settings, you may have to type cd /usr/bin && ./rebaseall -v instead.
Try opening Cygwin again.
This process worked for me. I hope it works for you guys too.
Source: http://cygwin.wikia.com/wiki/Rebaseall
I would like to add the following to the above answers, as it is what I had to do after reinstalling Cygwin:
Navigate to the "/usr/bin" directory (usually, C:\cygwin\bin) and right click, Run as Administrator the file: dash.exe
Then, at the $ prompt type the following, hitting enter after each line:
cd /usr/bin/
/usr/bin/peflags * -d 1
/usr/bin/rebaseall -v
What it does is, it marks the dll's as "rebase-able," and then rebases them. You have to have peflags.exe in addition to the above files (in previous answers). You may have to restart windows after doing this and you will definitely need to make sure that there are no processes nor services belonging to cygwin running. (Use task manager, kill any related processes, and then under the services tab look for any service starting with CYG and stop it.)
After doing this, I was able to get cygwin to run without any errors about dll's being loaded to the wrong addresses aka fork errors, etc.
I hope that this helps others, as it was a pain to find.
SOURCE: http://www.cygwin.com/faq.html#faq.using.fixing-fork-failures
and the rebase README file.
To add on to other answers here, we ran into the same issue but could not run the rebase command from the ash or dash shell. However, when launching the command from the Windows cmd shell, the following worked.
cmd /c "C:\cygwin64\bin\ash.exe /usr/rebaseall -v"
-v is to get verbose output
I found another information here :
http://cygwin.com/ml/cygwin/2014-02/msg00531.html
You have to delete the database at
/etc/rebase.db* and do in a "ash" windows :
peflags * -d 1
rebaseall
It works for me on 2 servers.
I solved this problem by restarting my computer. Probably installed a driver update and kept using sleep instead of shutting down.
Experienced the same issue when loading Cygwin with cygiconv-2.dll forking and not loading successfully in the Cygwin terminal, but after turning off my AntiVirus (it was specifically Ad-aware), the issue resolved, and Cygwin worked properly.
In case you are using babun's Cygwin, after rebaseall, try launching Cygwin by executing .babun\cygwin\cygwin.bat in a Windows command prompt or Windows explorer.
This works for me (while launching babun's default console - mintty results in fork error).
I had the error on win10 and i was trying to rebase to c: before install.
then i saw that the installer was installing it instead to c:/Users/myuser
so i was coping all files from c:/Users/myuser to c:.badun
and then restart plus open badun.bat
not shure if this was wise its now duplicated XD... but then it worked again.
Rebaseing didn't help in my case. In addition to what other people suggested, I noticed that reducing the length of PATH environment variable fixed the issue for me (and for other people as well as can be seen from this answer).
This issue is intermittent in nature & I found this issue when there is network is too slow to connect to remote machine on AWS.... I have Shell script that runs through Gitbash shell & it connects to AWS EC2 instance with ssh..... Most of the time, it ran correctly but 2 out 100 times it get into this issue bash: fork: retry: Resource temporarily unavailable .... Killing the MSYS2 terminal from task manager helps to overcome with this issue....
Negative side is you need to run the scripts from the beginning...
I had the same issue on Windows 10 and the mobaxterm app (which uses cygwin) and I tried all of answers listed here however for me, the solution was to simply delete the "CryptoPro CSP" application.
I started facing this problem after upgrading to windows 10. As of now I do not see that any of the above method working.
What I am noticing is that if you start cygwin with admin right (right click and say "run as admin") then it works fine.
Or you open cmd as administrator and then launch cygwin from there, then also it runs fine.
Just reinstall cygwin and select TCL and activate EXPECT
I'm trying to debug a CUDA program, but when I'm launching gdb like so:
$ gdb -i=mi <program name>
$ r <program arguments>
I'm getting:
/home/wvxvw/Projects/cuda/exercise-1-udacity/cs344/HW2/hw:
error while loading shared libraries: libcudart.so.5.0:
cannot open shared object file: No such file or directory
Process gdb-inferior killed
(formatted for readability)
(I'm running gdb using M-xgdb) If that matters, then CUDA libraries are in the .bashrc
export PATH="/usr/local/cuda/bin:$PATH"
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/cuda/lib64"
error while loading shared libraries: libcudart.so.5.0
This error has nothing to do with GDB: your executable, when run from inside GDB, can't find the library it needs.
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/local/cuda/lib64"
GDB runs your program in a new $SHELL, so that should have worked. I wonder if there is some interaction with emacs.
In any case, this:
(gdb) set env LD_LIBRARY_PATH /usr/local/cuda/lib64
(gdb) run
should fix this problem.
Update:
as I've mentioned it before, ld path is set properly
No, it isn't. If it was, you wouldn't have the problem.
Now, I don't know why it isn't set properly. If you really want to find out, start by running GDB outside emacs (to exclude possible emacs interactions).
If the problem is still present, gdb show env, shell env, adding echo "Here" to your ~/.basrc, etc. should help you find where things are not working as you expect them.
I've had this problem as well. One way to look at it is that even if the LD_LIBRARY_PATH variable is correct when you enter show env into gdb, it may not be correct when you actually execute the program because gdb executes $SHELL -c <program> to run the program. Try this as a test, run $SHELL from the command line and then echo $LD_LIBRARY_PATH. Is it correct? If not, then you probably need to add it to your rc (.tcshrc in my case).
I had a similar problem when trying to run gdb on windows 7. I use MobaXterm to access a Linux toolbox. I installed gdb separately from http://www.gnu.org/software/gdb/ . I got it to work by making sure gdb could find the correct .dll files as mentioned by Employed Russian. If you have MobaXterm installed the .dll files should appear in your home directory in MobaXterm/slash/bin.
gdb however did not recognize the LD_LIBRARY_PATH variable. For me, it worked when I used the PATH variable instead:
(gdb) set env PATH C:\Users\Joshua\Documents\MobaXterm\slash\bin
(gdb) run
I would think using PATH instead of LD_LIBRARY_PATH might work for you provided you put the correct path to your library.
gdb is looking for a library, so why are you concerned with the include path? You may want to try to set the gdb option "solib-search-path" to point to the location of the libcudart.so.5.0 library.