GCC: libstdc++.so: Error adding sybols: file in wrong format - c++

I am trying to compile for a gd32v chip using gcc(the riscv version on the arch community repo).
Compiling seems to work fine, however when trying to link the objects into an elf file, I get the error:
Linking ELF target: main.elf
riscv64-linux-gnu-g++ #_linker_flags -o main.elf ../../bmptk-RISC-V/targets/risc_v/gd32v/gd32vf103xb_boot.o hwlib.o main.o ../../bmptk-RISC-V/targets/risc_v/GD32VF103_standard_peripheral/Source/gd32vf103_rcu.o ../../bmptk-RISC-V/targets/risc_v/GD32VF103_standard_peripheral/Source/gd32vf103_gpio.o ../../bmptk-RISC-V/targets/risc_v/GD32VF103_standard_peripheral/system_gd32vf103.o bmptk_heap_none.o bmptk_fixed_size_stack.o -Os -Tmain.ld
/usr/lib/gcc/riscv64-linux-gnu/10.2.0/../../../../riscv64-linux-gnu/bin/ld: /usr/lib/gcc/riscv64-linux-gnu/10.2.0/../../../../riscv64-linux-gnu/lib/libstdc++.so: error adding symbols: file in wrong format
collect2: error: ld returned 1 exit status
make: *** [../../bmptk-RISC-V/Makefile.inc:1498: main.elf] Error 1
In this make rule, I am using a file '_linker_flags' for my linker flags, to keep the terminal clean during compilation. The contents of this file are as follows:
-march=rv32imac -mabi=ilp32 -Os -fdata-sections -ffunction-sections -I../../bmptk-RISC-V/targets/risc_v/ -I../../bmptk-RISC-V/targets/risc_v/GD32VF103_standard_peripheral -I../../bmptk-RISC-V/targets/risc_v/GD32VF103_standard_peripheral/Include -I../../bmptk-RISC-V/targets/risc_v/RISCV/drivers -I../../bmptk-RISC-V/targets/risc_v -I/usr/include -I/usr/include -I../../hwlib-RISC-V/library -I../../Catch2/single_include -I../../Catch2/single_include/catch2 -I../../boost_1_69_0 -I../../bmptk-RISC-V -I../../bmptk-RISC-V/targets -I../../bmptk-RISC-V/targets/risc_v -I../../bmptk-RISC-V/targets/risc_v/RISCV -I../../bmptk-RISC-V/targets/risc_v/RISCV/drivers -DHWCPP_FAKE_OSTREAM -DBMPTK_TARGET=gd32vf103v -DBMPTK_TARGET_gd32vf103v -DHWLIB_TARGET_gd32vf103v -DHWCPP_TARGET_gd32vf103v -DGF_TARGET_gd32vf103v -DBMPTK_CHIP=gd32vf103v -DBMPTK_CHIP_gd32vf103v -DBMPTK_XTAL= -DBMPTK_BAUDRATE=38400 -DHWLIB_BAUDRATE=38400 -DGODAFOSS_BAUDRATE=38400 -DGF_BAUDRATE=38400 -DBMPTK_VERSION=V04_00_work_in_progress_2020_05_23 -DBMPTK_EMBEDDED -lgcc -Wl,-Map,main.map -Wl,--gc-sections -Wl,-fatal-warnings
I'm not familiar with this error, does anyone know what I would have to look into to fix this?
EDIT:
I asked a teacher at school and they told me that the problem most likely arised from using a mismatching linker and compiler, or that some object files weren't cleaned when calling make. I made sure all objects were deleted before compiling and made sure the compiler and linker were the same.
They should be the same. I am running riscv64-linux-gnu-ld version 2.35 and riscv64-linux-gnu-g++ version 10.2.0. Both are from the arch community repository.

To see exactly the mapping/switches of the libraries supported by your compiler you can use : riscv64-linux-gnu-g++ -print-multi-lib. If you compiler was compiled with multilib enabled you can choose an rv32 libs without hard float otherwise it will not link also since you are compiler for rv32imac.
If your compiler was build without the multlib option you have two option:
Compile with -nostdlib and provide the needed file to the linker crt, libc libgcc ... or you can get a compiler which was build with multilib enabled.

Related

libgtest.so error adding symbols: DSO missing from command line

I have been using gtests for unit testing a personal project. Last week I upgraded to the LTS version of Linux Mint. Unfortunately, after that event, I haven't been able to compile my project due to gtests linking problems.
The following error is being issued:
/usr/bin/x86_64-linux-gnu-ld: build/tests/policies/roundrobin_tests.o: undefined reference to symbol '_ZN7testing4TestC2Ev'
/home/myuser/Documents/googletest-release-1.8.0/googletest/libgtest.so: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
I have generated both libgtest.so and libgtest_main.so through CMake 3.10.2. The gtest version is the release-1.8.0, the same I used to have before.
Those libraries are located in /usr/lib and the corresponding include folder has also been copied to /usr/include. I made sure that this location is in my ld path and that is not the problem.
My compiler is g++ v7.3.0 and the command Im using to compile the testes is:
g++ -std=c++14 -Wall -O3 -Iinclude build/tests/policies/roundrobin_tests.o -lgtest_main -pthread -o bin/policies/roundrobin_tests
I have tried altering the order of the elements in the command, explicitly adding -L/usr/lib and -I/usr/include without luck. A funny fact is that if I take off the -pthread flag, the error is still the same.
The same command was used before and the only difference is the compiler version I am using now as I used g++ 5.4.0 before. Any insights on how to solve this?
edit: Just tested the same process with g++ 5.4.0 and CMake 3.5 and the same problems ocurred.

Ubuntu 16.04 Eclipse CPP - error adding symbols: Bad value [duplicate]

I am using the command:
g++ --std=c++11 -fPIC -Iincludes parser.cpp lib/main-parser.o lib/lib.a
To compile a C++ program on Debian 9. But I am getting the below error message:
/usr/bin/ld: lib/lib.a(csdocument.o): relocation R_X86_64_32 against '.rodata' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: error: ld returned 1 exit status
I have already seen the thread:
Compilation fails with "relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object"
However, I have tried adding the -fPIC argument however it strangely gives the same error message, along with "recompile with -fPIC"
Any ideas would be appreciated. I have tried compiling this on my University's RedHat systems and it works fine there. I'm thinking it could be a missing dependency, but I've been unable to find any answers.
Thanks in advance
As it seems gcc is trying to produce a position-independent executable ("shared object" is the hint), tell it not to:
g++ --std=c++11 -no-pie -Iincludes parser.cpp lib/main-parser.o lib/lib.a
It seems that g++ produces position-independent executables by default on your system. Other systems would require -pie to do so. Using -no-pie should create a "regular" (position dependent) executable.
(The error is a result of trying to link an object file that was compiled as non-position-independent into an executable that is supposed to be position-independent).
/usr/bin/ld: lib/lib.a(csdocument.o): relocation R_X86_64_32 against '.rodata' \
can not be used when making a shared object; recompile with -fPIC
This linker error is telling you that the object file csdocument.o in the
static library lib/lib.a is not Position Independent Code and hence
cannot be linked with your PIE program. So you need to recompile the source
files of lib/lib.a with -fPIC, then rebuild the static library, then link
it with your PIE program. If you don't have control of the libary sources
then request a PIC build from its supplier.
(Others have questioned why you should need to build a PIE target at all
since it's not a shared library. In Debian 9, GCC produces PIE executables
by default,
whether programs or shared libraries. The same goes for Ubuntu as of 17.04. )
Adding this worked for me.
g++ --std=c++11 -no-pie
I also added the -fPIC to compile flag.

Linking against a c/c++ library

I have some basic questions regarding linking against a C/C++ library. I am trying to understand the difference in using the two different usages -L/usr/local/lib -lm usage and /usr/local/lib/libm.a usage. E.g., when I compile and link an example from the [SUNDIALS] library, both of the following work
gcc -Wall cvRoberts_dns.c -o cvRoberts_dns.exe -I/usr/local/include -L/usr/local/lib/ -lsundials_cvode -lsundials_nvecserial -lm
OR
gcc -Wall cvRoberts_dns.c -o cvRoberts_dns.exe /usr/local/lib/libsundials_cvode.a /usr/local/lib/libsundials_nvecserial.a
However, to compile and link an example from the library [libsbml], the following works
g++ -Wall readSBML.cpp -o readSBML.exe -I/usr/local/include -L/usr/local/lib -lsbml
but the this does not
g++ -Wall readSBML.cpp -o readSBML.exe /usr/local/lib/libsbml.a
If required, I can post the complete error message I get, but the last line of the message is as follows
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
My questions are as follows:
In the second style of linking (of the first example), there is no information regarding where to find the include files (header files), how does the compiler know the information supplied in -I/usr/local/include which is provided in the first style of the first example?
In the second style of first example there is no /usr/local/lib/libm.a (it actually gives an error message that libm.a cannot be found if I try to include it), then why -lm is required in the first style?
How do I compile the second example in the second style (i.e., using /usr/local/lib/libsbml.a)? I do see that there are files - libsbml.a and libsbml-static.a in the /usr/local/lib folder, but none of them work.
If it helps, I am on an OS X machine.
I would be very thankful if any one could help in this regard.
Just an update - I tried
g++ -Wall readSBML.cpp -o readSBML.exe /usr/local/lib/libsbml.5.dylib
and that compiled and linked just fine.
Thanks
SN
In general
The -L option is meant to find where the libraries themselves are. Each library is a collection of one or more object code (machine language) files. There is no need to find the include files.
The -I option has nothing to with linker, it helps the compiler resolve the header files used in your driver programme( eg Roberts_dns.c). This happens during the pre-processing stage.
In the second style of linking (of the first example), there is no
information regarding where to find the include files (header files),..
If the compilation worked as you expected,it may be because /usr/local/include is in the default include path for gcc. To check the default include path for gcc do gcc -xc -E -v -.
In the second style of first example there is no
/usr/local/lib/libm.a(it actually gives an error message that libm.a
cannot be found if I try to include it), then why -lm is required in
the first style?
In Linux, some libraries like libc.a are directly linked to your execultable by default while libm.a is not. In Mac (your environment), though, libm is directly link to the executable by default. So you don't have to explicitly link it. It is less likely that libm.a is located in /usr/local/lib/. So you got an error. But why link it in the first place?

How to cope with older library installed in `/usr/lib` by sysadmin

I have recently got an account on a supercomputer grid, and I'm trying to compile my code in theri system. Problem is that program won't link with following errors:
/mnt/opt/tools/slc6/binutils/2.22/bin/ld: warning: libboost_system.so.1.55.0, needed by /mnt/home/jbzdak/tools/boost_1_55//lib/libboost_thread.so, may conflict with libboost_system.so.5
/mnt/opt/tools/slc6/binutils/2.22/bin/ld: /mnt/home/jbzdak/tools/boost_1_55//lib/libboost_thread.so: undefined reference to symbol '_ZN5boost6system15system_categoryEv'
/mnt/opt/tools/slc6/binutils/2.22/bin/ld: note: '_ZN5boost6system15system_categoryEv' is defined in DSO /mnt/home/jbzdak/tools/boost_1_55//lib/libboost_system.so.1.55.0 so try adding it to the linker command line
/mnt/home/jbzdak/tools/boost_1_55//lib/libboost_system.so.1.55.0: could not read symbols: Invalid operation
collect2: error: ld returned 1 exit status
Which is due to the fact that my program needs boost 1.55, and only 1.39 is instlled on the system in /usr/lib64. I have installed my version of boost in local folder, but somehow still system one is loaded first.
Here is excerpt from flags passed to the compiler:
-std=gnu++11 -Werror -Wall -lboost_thread -lboost_filesystem -lboost_system -lboost_iostreams -g -DG4OPTIMISE -Iinclude
-W -Wall -ansi -pedantic -Wno-non-virtual-dtor -Wno-long-long -Wwrite-strings -Wpointer-arith -Woverloaded-virtual -pipe -O2
full listing of flags is here (they should be irrevelant).
Here are revelant config variables:
LIBRARY_PATH /mnt/home/jbzdak/tools/boost_1_55/lib:
CPLUS_INCLUDE_PATH /mnt/home/jbzdak/tools/boost_1_55/include:/mnt/home/jbzdak/tools/geant4.9.6.3/compile/include/Geant4
LD_LIBRARY_PATH /mnt/home/jbzdak/tools/boost_1_55/lib:/mnt/opt/tools/slc6/gcc/4.8.3/lib64: ...
Directory /mnt/home/jbzdak/tools/boost_1_55 contains installed boost library.
I use GCC 4.8.3 with ld 2.22.
I have very little experience with linker errors hence the question. Is there any way to exclude boost libraries in /usr/lib64, or make the linker use locally installed libraries, and and ignore the system one?
I said in a comment:
There's no -L/alternative/location/of/boost/lib shown, so the compiler (linker) doesn't know it needs to look somewhere else for your modern Boost library. You may need -Wl,rpath,/alternative/location/of/boost/lib as well.
And the question was asked:
Why didn't LD_LIBRARY_PATH solve the issue?
Because LD_LIBRARY_PATH is a run-time variable rather than a link-time variable. It affects where the /lib/ld.so.1 (or equivalent) dynamic loader looks for libraries when you run a program, not where the linker looks to find its libraries.
After some additional debugging and asking another question, I found out the root cause of problem. Any -L parameter has precedence over LIBRARY_PATH and somehow -L/usr/lib64 was added (hence it had precedence over my version).
To check what options are sent to gcc pass -v parameter.

ld can't link with a main executable

On OSX 10.6.4 with i686-apple-darwin10-g++-4.2.1 compiling using TextMate and a Makefile which in the first place has been made für a Linux and I am trying to translate for OSX.
When compiling a c++ project I get the "can't link with a main executable" error:
g++ -Wall -g -I ~/svnX-Repository/axp-Projekte/xrlfupa/trunk/src/ -I ~/svnX-Repository/boost_1_44_0 -I /opt/local/var/macports/software/boost/1.44.0_0/opt/local/lib/ -I /opt/local/var/macports/software/gsl/1.14_0/opt/local/include/ -o xrfLibTest xrfLibTest.o excitFunctions.o xrfFunctions.o filterFunctions.o detectorFunctions.o -L/opt/local/var/macports/software/boost/1.44.0_0/opt/local/lib/ -L/opt/local/var/macports/software/gsl/1.14_0/opt/local/lib/ -lm -lxrlTUB -lboost_serialization -lgsl -lgslcblas # Debug 1
ld: in /usr/local/lib/libxrlTUB.so, can't link with a main executable
collect2: ld returned 1 exit status
make: *** [prog] Error 1
The library that is mentioned (libxrlTUB.so) is in its place (/usr/local/lib/libxrlTUB.so) but, possibly that is where the problem came from, the libxrlTUB.so has been compiled by myself beforehand as well.
The compile process went through, it was generated by swig, though there was a warning:
g++ -arch x86_64 -m32 -g -fpic -I /usr/include/python2.6 -c PyXrl_wrap.cxx
In function 'void SWIG_Python_AddErrorMsg(const char*)':
warning: format not a string literal and no format arguments
which, as far as I could find out, shouldnt be a problem. (Or is it?)
Unfortunately this whole thing is part of a project from the university. Actually I am supposed to write an X-ray-analysis script in python, which would be fine, if... well if I wouldn't be expected to use the librarys that are meant to result from this c++ project.
(Afterwards they should be used via import in python.)
I am not really experienced with c++, neither with compiling on OSX systems. So far I have been bothering with scipting (python, bash, etc). So Maybe I am just missing something simple. Hopefully someone can give me an hint where I can continue reading in order to deal with the above "can't link with a main executable" error...
Thanx in advance,
Liam
The error message is telling you the problem—it is that /usr/local/lib/libxrlTUB.so is not a shared library; it's an executable. You can't link against an executable. Probably whatever build process you used for libxrlTUB.so didn't understand how to build shared libraries on the Mac (it's more suspect because .dylib is the correct extension to use.)
Take a look at Apple's documentation on compiling dynamic libraries. You can use file to make sure your output is of the correct type, for example:
% gcc -c foo.c
% gcc -dynamiclib foo.o -o foo.dylib
% file foo.dylib
foo.dylib: Mach-O 64-bit dynamically linked shared library x86_64
Without -dynamiclib you end up with an executable, which may be the problem you've run into.