Find all text between $...$ delimiters using bash script - regex

I have a text file, and I'm trying to get an array of strings containing between $..$ delimiters (LaTeX formulas) using bash script. My current code doesn't work, result is empty:
#!/bin/bash
array=($(grep -o '\$([^\$]*)\$' test.txt))
echo ${array[#]}
I tested this regex here, it finds the matches. I use the following test string:
b5f1e7$bfc2439c621353$d1ce0$629f$b8b5
Expected result is
bfc2439c621353 629f
But echo returns empty. Although if I use '[0-9]\+' it works:
5 1 7 2439 621353 1 0 629 8 5
What do I do wrong?

How about:
grep -o '\$[^$]*\$' test.txt | tr -d '$'
This is basically performing your original grep (but without the brackets, which were causing it to not match), then removing the first/last characters from each match.

You may use awk with input field separator as $:
s='b5f1e7$bfc2439c621353$d1ce0$629f$b8b5'
awk -F '$' '{for (i=2; i<=NF; i+=2) print $i}' <<< "$s"
Note that this awk command doesn't validate input. If you want awk to allow for only valid inputs then you may use this gnu awk command with FPAT:
awk -v FPAT='\\$[^$]*\\$' '{for (i=1; i<=NF; i++) {gsub(/\$/, "", $i); print $i}}' <<< "$s"
bfc2439c621353
629f

What about this?
grep -Eo '\$[^$]+\$' a.txt | sed 's/\$//g'
I'm using sed to replace the $.

Try escaping your braces:
tst> grep -o '\$\([^\$]*\)\$' test.txt
$bfc2439c621353$
$629f$
of course, you then have to strip out the $ signs (-o prints the entire match). You can try sed instead:
tst> sed 's/[^\$]*\$\([^\$]*\)\$[^\$]*/\1\n/g' test.txt
bfc2439c621353
629f

Why is your expected output given b5f1e7$bfc2439c621353$d1ce0$629f$b8b5 the two elements bfc2439c621353 629f rather than the three elements bfc2439c621353 d1ce0 629f?
Here's a single grep command to extract those:
$ grep -Po '\$\K[^\$]*(?=\$)' <<<'b5f1e7$bfc2439c621353$d1ce0$629f$b8b5'
bfc2439c621353
d1ce0
629f
(This requires GNU grep as compiled with libpcre for -P)
This uses \$\K (equivalent to (?<=\$)to look behind at the first $ and (?=\$) to look ahead to the next $. Since these are lookarounds, they are not absorbed by grep in the process and therefore d1ce0 is available to be found.
Here's a single POSIX sed command to extract those:
$ sed 's/^[^$]*\$//; s/\$[^$]*$//; s/\$/\n/g' \
<<<'b5f1e7$bfc2439c621353$d1ce0$629f$b8b5'
bfc2439c621353
d1ce0
629f
This does not use any GNU notation and should work on any POSIX-compatible system (such as OS X). It removes the leading and trailing portions that aren't wanted, then replaces each $ with a newline.

Using bash regex:
var="b5f1e7\$bfc2439c621353\$d1ce0\$629f\$b8b5" # string to var
while [[ $var =~ ([^$]*\$)([^$]*)\$(.*) ]] # matching
do
echo -n "${BASH_REMATCH[2]} " # 2nd element has the match
var="${BASH_REMATCH[3]}" # 3rd is the rest of the string
done
echo # trailing newline
bfc2439c621353 629f

Related

How to parse every match of sed command

I have a string [u'SOMEVALUE1', u'SOMEVALUE2', u'SOMEVALUE3'], I would like to parse every element matched by my sed command. The element matched are in the single quote. Here is my script
#!/bin/bash
ARR="[u'SOMEVALUE1', u'SOMEVALUE1', u'SOMEVALUE1']"
for id in $(sed -n "s/^.*'\(.*\)'.*$/\1/ p" <<< ${ARR});
do
echo "$id"
done
I have only the first value returned.
The wildcard .* will match the longest leftmost possible string. If your intention is to match the individual substrings which are in single quotes, try
grep -o "'[^']*'" <<<"$ARR"
To remove the single quotes around the values, simply pipe to sed "s/'//g" and to loop over the lines printed by a pipe, do
... commands ... |
while read -r id; do
: things with "$id"
done
BASH can match regular expressions with the help of =~ (see man bash). Matching more than once is a bit painful but in your case we can split the input on white space and match once per item:
ARR="[u'SOMEVALUE1', u'SOMEVALUE1', u'SOMEVALUE1']"
for A in $ARR
do
[[ $A =~ u\'(.+)\' ]] && echo ${BASH_REMATCH[1]}
done
results in
SOMEVALUE1
SOMEVALUE1
SOMEVALUE1
is this what you're trying to do?
$ ARR="[u'SOMEVALUE1', u'SOMEVALUE1', u'SOMEVALUE1']"
$ awk -v RS="'" '!(NR%2)' <<< "$ARR"
SOMEVALUE1
SOMEVALUE1
SOMEVALUE1
$ awk -v RS="'" '!(NR%2)' <<< "$ARR" |
while IFS= read -r id; do echo "id=$id"; done
id=SOMEVALUE1
id=SOMEVALUE1
id=SOMEVALUE1

Extract version using grep/regex in bash

I have a file that has a line stating
version = "12.0.08-SNAPSHOT"
The word version and quoted strings can occur on multiple lines in that file.
I am looking for a single line bash statement that can output the following string:
12.0.08-SNAPSHOT
The version can have RELEASE tag too instead of SNAPSHOT.
So to summarize, given
version = "12.0.08-SNAPSHOT"
expected output: 12.0.08-SNAPSHOT
And given
version = "12.0.08-RELEASE"
expected output: 12.0.08-RELEASE
The following command prints strings enquoted in version = "...":
grep -Po '\bversion\s*=\s*"\K.*?(?=")' yourFile
-P enables perl regexes, which allow us to use features like \K and so on.
-o only prints matched parts instead of the whole lines.
\b ensures that version starts at a word boundary and we do not match things like abcversion.
\s stands for any kind of whitespace.
\K lets grep forget, that it matched the part before \K. The forgotten part will not be printed.
.*? matches as few chararacters as possible (the matching part will be printed) ...
(?=") ... until we see a ", which won't be included in the match either (this is called a lookahead).
Not all grep implementations support the -P option. Alternatively, you can use perl, as described in this answer:
perl -nle 'print $& if m{\bversion\s*=\s*"\K.*?(?=")}' yourFile
Seems like a job for cut:
$ echo 'version = "12.0.08-SNAPSHOT"' | cut -d'"' -f2
12.0.08-SNAPSHOT
$ echo 'version = "12.0.08-RELEASE"' | cut -d'"' -f2
12.0.08-RELEASE
Portable solution:
$ echo 'version = "12.0.08-RELEASE"' |sed -E 's/.*"(.*)"/\1/g'
12.0.08-RELEASE
or even:
$ perl -pe 's/.*"(.*)"/\1/g'.
$ awk -F"\"" '{print $2}'

How to display words as per given number of letters?

I have created this basic script:
#!/bin/bash
file="/usr/share/dict/words"
var=2
sed -n "/^$var$/p" /usr/share/dict/words
However, it's not working as required to be (or still need some more logic to put in it).
Here, it should print only 2 letter words but with this it is giving different output
Can anyone suggest ideas on how to achieve this with sed or with awk?
it should print only 2 letter words
Your sed command is just searching for lines with 2 in text.
You can use awk for this:
awk 'length() == 2' file
Or using a shell variable:
awk -v n=$var 'length() == n' file
What you are executing is:
sed -n "/^2$/p" /usr/share/dict/words
This means: all lines consisting in exactly the number 2, nothing else. Of course this does not return anything, since /usr/share/dict/words has words and not numbers (as far as I know).
If you want to print those lines consisting in two characters, you need to use something like .. (since . matches any character):
sed -n "/^..$/p" /usr/share/dict/words
To make the number of characters variable, use a quantifier {} like (note the usage of \ to have sed's BRE understand properly):
sed -n "/^.\{2\}$/p" /usr/share/dict/words
Or, with a variable:
sed -n '/^.\{'"$var"'\}$/p' /usr/share/dict/words
Note that we are putting the variable outside the quotes for safety (thanks Ed Morton in comments for the reminder).
Pure bash... :)
file="/usr/share/dict/words"
var=2
#building a regex
str=$(printf "%${var}s")
re="^${str// /.}$"
while read -r word
do
[[ "$word" =~ $re ]] && echo "$word"
done < "$file"
It builds a regex in a form ^..$ (the number of dots is variable). So doing it in 2 steps:
create a string of the desired length e.g: %2s. without args the printf prints only the filler spaces for the desired length e.g.: 2
but we have a variable var, therefore %${var}s
replace all spaces in the string with .
but don't use this solution. It is too slow, and here are better utilities for this, best is imho grep.
file="/usr/share/dict/words"
var=5
grep -P "^\w{$var}$" "$file"
Try awk-
awk -v var=2 '{if (length($0) == var) print $0}' /usr/share/dict/words
This can be shortened to
awk -v var=2 'length($0) == var' /usr/share/dict/words
which has the same effect.
To output only lines matching 2 alphabetic characters with grep:
grep '^[[:alpha:]]\{2\}$' /usr/share/dict/words
GNU awk and mawk at least (due to empty FS):
$ awk -F '' 'NF==2' /usr/share/dict/words #| head -5
aa
Ab
ad
ae
Ah
Empty FS separates each character on its own field so NF tells the record length.

Remove everything after 2nd occurrence in a string in unix

I would like to remove everything after the 2nd occurrence of a particular
pattern in a string. What is the best way to do it in Unix? What is most elegant and simple method to achieve this; sed, awk or just unix commands like cut?
My input would be
After-u-math-how-however
Output should be
After-u
Everything after the 2nd - should be stripped out. The regex should also match
zero occurrences of the pattern, so zero or one occurrence should be ignored and
from the 2nd occurrence everything should be removed.
So if the input is as follows
After
Output should be
After
Something like this would do it.
echo "After-u-math-how-however" | cut -f1,2 -d'-'
This will split up (cut) the string into fields, using a dash (-) as the delimiter. Once the string has been split into fields, cut will print the 1st and 2nd fields.
This might work for you (GNU sed):
sed 's/-[^-]*//2g' file
You could use the following regex to select what you want:
^[^-]*-\?[^-]*
For example:
echo "After-u-math-how-however" | grep -o "^[^-]*-\?[^-]*"
Results:
After-u
#EvanPurkisher's cut -f1,2 -d'-' solution is IMHO the best one but since you asked about sed and awk:
With GNU sed for -r
$ echo "After-u-math-how-however" | sed -r 's/([^-]+-[^-]*).*/\1/'
After-u
With GNU awk for gensub():
$ echo "After-u-math-how-however" | awk '{$0=gensub(/([^-]+-[^-]*).*/,"\\1","")}1'
After-u
Can be done with non-GNU sed using \( and *, and with non-GNU awk using match() and substr() if necessary.
awk -F - '{print $1 (NF>1? FS $2 : "")}' <<<'After-u-math-how-however'
Split the line into fields based on field separator - (option spec. -F -) - accessible as special variable FS inside the awk program.
Always print the 1st field (print $1), followed by:
If there's more than 1 field (NF>1), append FS (i.e., -) and the 2nd field ($2)
Otherwise: append "", i.e.: effectively only print the 1st field (which in itself may be empty, if the input is empty).
This can be done in pure bash (which means no fork, no external process). Read into an array split on '-', then slice the array:
$ IFS=-
$ read -ra val <<< After-u-math-how-however
$ echo "${val[*]}"
After-u-math-how-however
$ echo "${val[*]:0:2}"
After-u
awk '$0 = $2 ? $1 FS $2 : $1' FS=-
Result
After-u
After
This will do it in awk:
echo "After" | awk -F "-" '{printf "%s",$1; for (i=2; i<=2; i++) printf"-%s",$i}'

i have a file and i need to extract a particular string followed after the regex 'LN:' from the second line

please refer the file contents below.
#HD VN:1.0 SO:unsorted
#SQ SN:Chr1 LN:30427680
#PG ID:bowtie2 PN:bowtie2 VN:2.1.0
how can i extract just the number 30427680 using awk or any other unix command.
Using sed
sed -n 's/.*LN://p' < input.txt
This will erase everything up until LN:, and print what's left, and only if a substitution did take place.
Using awk
awk -v FS=: '/LN:/ { print $3; }' < input.txt
This will match lines that contain LN:, use : as field separator, and print the 3rd column.
Using grep
grep -o '[0-9]\{3,\}' < input.txt
This will match sequences of 3 or more digits, and print only the matched pattern thanks to the -o.
Depending on other cases not included in your question, you might have to make the patterns more strict.
Using grep:
grep -oP 'LN:\K.*' filename
Just use grep:
grep -o 30427680 file
-o, --only-matching
Prints only the matching part of the lines.
Using perl :
perl -ne 'print $& if /LN:\K.*/' filename
or
perl -ne 'print $1 if /LN:(.*)/' filename
Another awk
awk -F"LN:" 'NF>1 {print $2}' file