If I scan or query in DynamoDB it is possible to set the Limit property. The DynamoDB documentation says the following:
The maximum number of items to evaluate (not necessarily the number of
matching items).
So the problem with this is if you set filters and such it won't return all the items.
My goal that I'm trying to figure out how to achieve is to have a filter in a scan or query, but have it return x number of items. No matter what. I'm ok with having to use LastEvaluatedKey and make multiple requests, but I would like to try to make it as seamless and easy as possible (so not doing that would be best.
The only way I have thought to do this is to set the Limit property to say 1 or something. Then just keep scanning or querying using the LastEvaluatedKey until I reach that x number of items I'm looking for. Problem is, this seems VERY wasteful and inefficient. I mean if you have a table of millions of records you might have to make thousands and thousands of requests. It doesn't seem like it scales very well. Of course I'm sure it's no different than what DynamoDB would be doing behind the scenes.
But is there a way to do this more efficiently where I can reduce the number of requests I have to make? Or is that the only way to achieve this?
How would you achieve this goal?
A single Query operation will read up to the maximum number of items set (if using the Limit parameter) or a maximum of 1 MB of data and then apply any filtering to the results using FilterExpression.
You're 100% right that Limit is applied before FilterExpression. Meaning Dynamo might return some number or documents less than the Limit while other documents that satisfy the FilterExpression still exist in the table but aren't returned.
Its sounds like it would be unacceptable for your api to behave in the same manner. That is going to mean that in some cases, a single request to your service will result in multiple requests to Dynamo. Also, keep in mind that there is no way to predict what the LastEvaluatedKey will be which would be required to parallelize these requests. So in the case that your service makes multiple requests to Dynamo, they will be serial. To me, this is a rather heavy tradeoff but, if it is a requirement that you satisfy the Limit whenever possible, you have options.
First, Dynamo will automatically page at 1 MB. That means you could simply send your query to Dynamo without a Limit and implement the Limit on your end. You may still need to make multiple requests to ensure that your've satisfied the Limit but this approach will result in the fewest number of requests to Dynamo. The trade off here is the total data being read and transferred. Chances are your Limit will not happen to line up perfectly with the 1 MB limit which means the excess data being read, filtered, and transferred is wasted.
You already mentioned the other extreme of sending a Limit of 1 and pointed out that will result in the maximum number of requests to Dynamo
Another approach along these lines is to create some sort of probabilistic function that takes the Limit given to your service by the client and computes a new Limit for Dynamo. For example, your FilterExpression filters out about half of the documents in the table. That means you can multiply the client Limit by 2 and that would be a reasonable Limit to send to Dynamo. Of the approaches we've talked about so far, this one has the highest potential for efficiency however, it also has the highest potential for complexity. For example, you might find that using a simple linear function is not good enough and instead you need to use machine learning to find a multi-variate non-linear function to calculate the new Limit. This approach also heavily depends on the uniformity of your data in Dynamo as well as your access patterns. Again, you might need machine learning to optimize for those variables.
In any of the cases where you are implementing the Limit on your end, if you plan on sending back the LastEvaluatedKey to the client for subsequent calls to your service, you will also need to take care to keep track of the LastEvaluatedKey that you evaluated. You will no longer be able to rely on the LastEvaluatedKey returned from Dynamo.
The final approach would be to reorganize/regroup your data either with a GSI, a separate table that you keep in sync using Dynamo Streams or a different schema altogether with the goal of not requiring a FilterExpression.
Related
Given a large number of known row keys. How does bigtable read(not a scan operation) those rows? Does it read the rows one after the other or all at once? If I have a large number of non-contiguous rows that I want to read, is it better to make separate concurrent or parallel hits to read each or to give all rows to bigtable i.e. a "batch read"?
There are three options for a non-contiguous batch read which depend on your latency and CPU requirements. You can do all the reads as get requests in parallel, you can issue a read rows request/scan with multiple ranges that include only one row, or you can do a hybrid.
Reading with multiple parallel get requests
This option can be great if you have a lot of processing power or don't need to read a huge number of rows. This will issue multiple requests to Bigtable, so it's going to have an impact on your CPU utilization. One Bigtable node supports around 10K reads per second, but if you have 1000 rows you need to read individually that might make a dent in your capacity.
Also, if you need all of the requests to resolve before you can process the data, you may run into performance issues if one request is slow, it slows down the entire result.
Scan with multiple rows
Bigtable supports scanning with multiple filters. One filter is a row range based on the row key. You can create a row range filter that includes exactly one row and do a scan with a filter for each row.
The Bigtable client libraries support queries like this, so you can just pass the row keys and don't need to create all of those row range filters. However, it's important to know what is happening under the hood for performance. This one query will be performed sequentially on the Bigtable server, so it could take a lot more time than multiple gets.
In Java, to do this kind of query, you just pass multiple row keys to the Query builder like so:
Query query = Query.create(tableId).rowKey("phone#4c410523#20190501").rowKey("phone#4c410523#20190502");
ServerStream<Row> rows = dataClient.readRows(query);
for (Row row : rows) {
printRow(row);
}
Hybrid approach
Depending on the scale of rows you're working with, it may make sense to take your set of row keys, divide them up and issue multiple scans in parallel. You can get the benefit of fewer requests while still potentially getting better latency since the requests are parallelized.
I would recommend experimenting to see which scenario works best for your use case, or leave a comment with more information on your use case and I can see if there is more information I can offer you.
I am wanting to use Neptune for an application with cypher as my query language. I have a pretty small dataset of around ~8500 nodes and ~8500 edges edges. I am trying to do what seem to be fairly straightforward queries, but the latency is very high (~6-8 seconds for around 1000 rows). I have tried with various instance types, enabling and disabling caches, enabling and disabling the OSGP index to no avail. I'm really at a loss as to why the query performance is so poor.
Does anyone have any experience with poor query query performance using Neptune? I feel I must be doing something incorrect to have such high query latency.
Here is some more detailed information on my graph structure and my query.
I have a graph with 2 node types A and B and a single edge type
MAPS_TO which always is directed from an A node to a B node. The relation is MAPS_TO is many to many, but with the current dataset
it is primarily one-to-one, i.e. the graph is mainly
disconnected subgraphs of the form:
(A)-[MAPS_TO]-(B)
What I would like to do is for all A nodes to collect the distinct B nodes which they map to satisfying some conditions. I've experimented with my queries a bit and the fastest one I've been able to arrive at is:
MATCH (a:A)
WHERE a.Owner = $owner AND a.IsPublic = true
WITH a
MATCH (a)-[r:MAPS_TO]->(b:B)
WHERE (b)<-[:MAPS_TO {CreationReason: "origin"}]-(:A {Owner: $owner})
OR (b)<-[:MAPS_TO {CreationReason: "origin"}]-(:A {IsPublic: true})
WITH a, r, b ORDER BY a.AId SKIP 0 LIMIT 1000
RETURN a {
.AId
} AS A, collect(distinct b {
B: {BId: b.BId, Name: b.Name, other properties on B nodes...}
R: {CreationReason: r.CreationReason, other relation properties}
})
The above query takes ~6 seconds on the t4g.medium instance type. I tried upping to a r5d.2xlarge instance type and this cut the query time in half to 3-4 seconds. However, using such a large instance type seems quite excessive for such a small amount of data.
Really I am just trying to figure out why my query seems to perform so poorly. It seems to me that with the amount of data I have it should not really be possible to have a Neptune configuration with such performance.
Unfortunately, there are many reasons that performance could be suffering, be it instance size, data not in buffer cache, instance size, concurrent processes, query optimization, etc. so it is hard to provide specific suggestions with the information available.
To better understand the issue, I'd suggest taking a look at how the query is being processed. These details can be found using the openCypher explain feature which will provide low-level details on what the query is doing and where the time is being spent. If possible, I suggest opening a support case with AWS support.
In the docs for DynamoDB it says:
In a Query operation, DynamoDB retrieves the items in sorted order, and then processes the items using KeyConditionExpression and any FilterExpression that might be present.
And:
A single Query operation can retrieve a maximum of 1 MB of data. This limit applies before any FilterExpression is applied to the results.
Does this mean, that KeyConditionExpression is applied before this 1MB limit?
Indeed, your interpretation is correct. With KeyConditionExpression, DynamoDB can efficiently fetch only the data matching its criteria, and you only pay for this matching data and the 1MB read size applies to the matching data. But with FilterExpression the story is different: DynamoDB has no efficient way of filtering out the non-matching items before actually fetching all of it then filtering out the items you don't want. So you pay for reading the entire unfiltered data (before FilterExpression), and the 1MB maximum also corresponds to the unfiltered data.
If you're still unconvinced that this is the way it should be, here's another issue to consider: Imagine that you have 1 gigabyte of data in your database to be Scan'ed (or in a single key to be Query'ed), and after filtering, the result will be just 1 kilobyte. Were you to make this query and expect to get the 1 kilobyte back, Dynamo would need to read and process the entire 1 gigabyte of data before returning. This could take a very long time, and you would have no idea how much, and will likely timeout while waiting for the result. So instead, Dynamo makes sure to return to you after every 1MB of data it reads from disk (and for which you pay ;-)). Control will return to you 1000 (=1 gigabyte / 1 MB) times during the long query, and you won't have a chance to timeout. Whether a 1MB limit actually makes sense here or it should have been more, I don't know, and maybe we should have had a different limit for the response size and the read amount - but definitely some sort of limit was needed on the read amount, even if it doesn't translate to large responses.
By the way, the Scan documentation includes a slightly differently-worded version of the explanation of the 1MB limit, maybe you will find it clearer than the version in the Query documentation:
A single Scan operation will read up to the maximum number of items set (if using the Limit parameter) or a maximum of 1 MB of data and then apply any filtering to the results using FilterExpression.
I would like to store 1M+ different time series in Amazon's DynamoDb database. Each time series will have about 50K data points. A data point is comprised of a timestamp and a value.
The application will add new data points to time series frequently (all the time) and will retrieve (usually the whole time series) time series from time to time, for analytics.
How should I structure the database? Should I create a separate table for each timeseries? Or should I put all data points in one table?
Assuming your data is immutable and given the size, you may want to consider Amazon Redshift; it's written for petabyte-sized reporting solutions.
In Dynamo, I can think of a few viable designs. In the first, you could use one table, with a compound hash/range key (both strings). The hash key would be the time series name, the range key would be the timestamp as an ISO8601 string (which has the pleasant property that alphabetical ordering is also chronological ordering), and there would be an extra attribute on each item; a 'value'. This gives you the abilty to select everything from a time series (Query on hashKey equality) and a subset of a time series (Query on hashKey equality and rangeKey BETWEEN clause). However, your main problem is the "hotspot" problem: internally, Dynamo will partition your data by hashKey, and will disperse your ProvisionedReadCapacity over all your partitions. So you may have 1000 KB of reads a second, but if you have 100 partitions, then you have only 10 KB a second for each partition, and reading all data from a single time series (single hashKey) will only hit one partition. So you may think your 1000 KB of reads gives you 1 MB a second, but if you have 10 MB stored it might take you much longer to read it, as your single partition will throttle you much more heavily.
On the upside, DynamoDB has an extremely high but costly upper-bound on scaling; if you wanted you could pay for 100,000 Read Capacity units, and have sub-second response times on all of that data.
Another theoretical design would be to store every time series in a separate table, but I don't think DynamoDB is meant to scale to millions of tables, so this is probably a no-go.
You could try and spread out your time series across 10 tables where "highly read" data goes in table 1, "almost never read data" in table 10, and all other data somewhere in between. This would let you "game" the provisioned throughput / partition throttling rules, but at a high degree of complexity in your design. Overall, it's probably not worth it; where do you new time series? How do you remember where they all are? How do you move a time series?
I think DynamoDB supports some internal "bursting" on these kinds of reads from my own experience, and it's possible my numbers are off, and you will get adequete performance. However my verdict is to look into Redshift.
How about dripping each time series into JSON or similar and store in S3. At most you'd need a lookup from somewhere like Dynamo.
You still may need redshift to process your inputs.
Long story short, I'm rewriting a piece of a system and am looking for a way to store some hit counters in AWS SimpleDB.
For those of you not familiar with SimpleDB, the (main) problem with storing counters is that the cloud propagation delay is often over a second. Our application currently gets ~1,500 hits per second. Not all those hits will map to the same key, but a ballpark figure might be around 5-10 updates to a key every second. This means that if we were to use a traditional update mechanism (read, increment, store), we would end up inadvertently dropping a significant number of hits.
One potential solution is to keep the counters in memcache, and using a cron task to push the data. The big problem with this is that it isn't the "right" way to do it. Memcache shouldn't really be used for persistent storage... after all, it's a caching layer. In addition, then we'll end up with issues when we do the push, making sure we delete the correct elements, and hoping that there is no contention for them as we're deleting them (which is very likely).
Another potential solution is to keep a local SQL database and write the counters there, updating our SimpleDB out-of-band every so many requests or running a cron task to push the data. This solves the syncing problem, as we can include timestamps to easily set boundaries for the SimpleDB pushes. Of course, there are still other issues, and though this might work with a decent amount of hacking, it doesn't seem like the most elegant solution.
Has anyone encountered a similar issue in their experience, or have any novel approaches? Any advice or ideas would be appreciated, even if they're not completely flushed out. I've been thinking about this one for a while, and could use some new perspectives.
The existing SimpleDB API does not lend itself naturally to being a distributed counter. But it certainly can be done.
Working strictly within SimpleDB there are 2 ways to make it work. An easy method that requires something like a cron job to clean up. Or a much more complex technique that cleans as it goes.
The Easy Way
The easy way is to make a different item for each "hit". With a single attribute which is the key. Pump the domain(s) with counts quickly and easily. When you need to fetch the count (presumable much less often) you have to issue a query
SELECT count(*) FROM domain WHERE key='myKey'
Of course this will cause your domain(s) to grow unbounded and the queries will take longer and longer to execute over time. The solution is a summary record where you roll up all the counts collected so far for each key. It's just an item with attributes for the key {summary='myKey'} and a "Last-Updated" timestamp with granularity down to the millisecond. This also requires that you add the "timestamp" attribute to your "hit" items. The summary records don't need to be in the same domain. In fact, depending on your setup, they might best be kept in a separate domain. Either way you can use the key as the itemName and use GetAttributes instead of doing a SELECT.
Now getting the count is a two step process. You have to pull the summary record and also query for 'Timestamp' strictly greater than whatever the 'Last-Updated' time is in your summary record and add the two counts together.
SELECT count(*) FROM domain WHERE key='myKey' AND timestamp > '...'
You will also need a way to update your summary record periodically. You can do this on a schedule (every hour) or dynamically based on some other criteria (for example do it during regular processing whenever the query returns more than one page). Just make sure that when you update your summary record you base it on a time that is far enough in the past that you are past the eventual consistency window. 1 minute is more than safe.
This solution works in the face of concurrent updates because even if many summary records are written at the same time, they are all correct and whichever one wins will still be correct because the count and the 'Last-Updated' attribute will be consistent with each other.
This also works well across multiple domains even if you keep your summary records with the hit records, you can pull the summary records from all your domains simultaneously and then issue your queries to all domains in parallel. The reason to do this is if you need higher throughput for a key than what you can get from one domain.
This works well with caching. If your cache fails you have an authoritative backup.
The time will come where someone wants to go back and edit / remove / add a record that has an old 'Timestamp' value. You will have to update your summary record (for that domain) at that time or your counts will be off until you recompute that summary.
This will give you a count that is in sync with the data currently viewable within the consistency window. This won't give you a count that is accurate up to the millisecond.
The Hard Way
The other way way is to do the normal read - increment - store mechanism but also write a composite value that includes a version number along with your value. Where the version number you use is 1 greater than the version number of the value you are updating.
get(key) returns the attribute value="Ver015 Count089"
Here you retrieve a count of 89 that was stored as version 15. When you do an update you write a value like this:
put(key, value="Ver016 Count090")
The previous value is not removed and you end up with an audit trail of updates that are reminiscent of lamport clocks.
This requires you to do a few extra things.
the ability to identify and resolve conflicts whenever you do a GET
a simple version number isn't going to work you'll want to include a timestamp with resolution down to at least the millisecond and maybe a process ID as well.
in practice you'll want your value to include the current version number and the version number of the value your update is based on to more easily resolve conflicts.
you can't keep an infinite audit trail in one item so you'll need to issue delete's for older values as you go.
What you get with this technique is like a tree of divergent updates. you'll have one value and then all of a sudden multiple updates will occur and you will have a bunch of updates based off the same old value none of which know about each other.
When I say resolve conflicts at GET time I mean that if you read an item and the value looks like this:
11 --- 12
/
10 --- 11
\
11
You have to to be able to figure that the real value is 14. Which you can do if you include for each new value the version of the value(s) you are updating.
It shouldn't be rocket science
If all you want is a simple counter: this is way over-kill. It shouldn't be rocket science to make a simple counter. Which is why SimpleDB may not be the best choice for making simple counters.
That isn't the only way but most of those things will need to be done if you implement an SimpleDB solution in lieu of actually having a lock.
Don't get me wrong, I actually like this method precisely because there is no lock and the bound on the number of processes that can use this counter simultaneously is around 100. (because of the limit on the number of attributes in an item) And you can get beyond 100 with some changes.
Note
But if all these implementation details were hidden from you and you just had to call increment(key), it wouldn't be complex at all. With SimpleDB the client library is the key to making the complex things simple. But currently there are no publicly available libraries that implement this functionality (to my knowledge).
To anyone revisiting this issue, Amazon just added support for Conditional Puts, which makes implementing a counter much easier.
Now, to implement a counter - simply call GetAttributes, increment the count, and then call PutAttributes, with the Expected Value set correctly. If Amazon responds with an error ConditionalCheckFailed, then retry the whole operation.
Note that you can only have one expected value per PutAttributes call. So, if you want to have multiple counters in a single row, then use a version attribute.
pseudo-code:
begin
attributes = SimpleDB.GetAttributes
initial_version = attributes[:version]
attributes[:counter1] += 3
attributes[:counter2] += 7
attributes[:version] += 1
SimpleDB.PutAttributes(attributes, :expected => {:version => initial_version})
rescue ConditionalCheckFailed
retry
end
I see you've accepted an answer already, but this might count as a novel approach.
If you're building a web app then you can use Google's Analytics product to track page impressions (if the page to domain-item mapping fits) and then to use the Analytics API to periodically push that data up into the items themselves.
I haven't thought this through in detail so there may be holes. I'd actually be quite interested in your feedback on this approach given your experience in the area.
Thanks
Scott
For anyone interested in how I ended up dealing with this... (slightly Java-specific)
I ended up using an EhCache on each servlet instance. I used the UUID as a key, and a Java AtomicInteger as the value. Periodically a thread iterates through the cache and pushes rows to a simpledb temp stats domain, as well as writing a row with the key to an invalidation domain (which fails silently if the key already exists). The thread also decrements the counter with the previous value, ensuring that we don't miss any hits while it was updating. A separate thread pings the simpledb invalidation domain, and rolls up the stats in the temporary domains (there are multiple rows to each key, since we're using ec2 instances), pushing it to the actual stats domain.
I've done a little load testing, and it seems to scale well. Locally I was able to handle about 500 hits/second before the load tester broke (not the servlets - hah), so if anything I think running on ec2 should only improve performance.
Answer to feynmansbastard:
If you want to store huge amount of events i suggest you to use distributed commit log systems such as kafka or aws kinesis. They allow to consume stream of events cheap and simple (kinesis's pricing is 25$ per month for 1K events per seconds) – you just need to implement consumer (using any language), which bulk reads all events from previous checkpoint, aggregates counters in memory then flushes data into permanent storage (dynamodb or mysql) and commit checkpoint.
Events can be logged simply using nginx log and transfered to kafka/kinesis using fluentd. This is very cheap, performant and simple solution.
Also had similiar needs/challenges.
I looked at using google analytics and count.ly. the latter seemed too expensive to be worth it (plus they have a somewhat confusion definition of sessions). GA i would have loved to use, but I spent two days using their libraries and some 3rd party ones (gadotnet and one other from maybe codeproject). unfortunately I could only ever see counters post in GA realtime section, never in the normal dashboards even when the api reported success. we were probably doing something wrong but we exceeded our time budget for ga.
We already had an existing simpledb counter that updated using conditional updates as mentioned by previous commentor. This works well, but suffers when there is contention and conccurency where counts are missed (for example, our most updated counter lost several million counts over a period of 3 months, versus a backup system).
We implemented a newer solution which is somewhat similiar to the answer for this question, except much simpler.
We just sharded/partitioned the counters. When you create a counter you specify the # of shards which is a function of how many simulatenous updates you expect. this creates a number of sub counters, each which has the shard count started with it as an attribute :
COUNTER (w/5shards) creates :
shard0 { numshards = 5 } (informational only)
shard1 { count = 0, numshards = 5, timestamp = 0 }
shard2 { count = 0, numshards = 5, timestamp = 0 }
shard3 { count = 0, numshards = 5, timestamp = 0 }
shard4 { count = 0, numshards = 5, timestamp = 0 }
shard5 { count = 0, numshards = 5, timestamp = 0 }
Sharded Writes
Knowing the shard count, just randomly pick a shard and try to write to it conditionally. If it fails because of contention, choose another shard and retry.
If you don't know the shard count, get it from the root shard which is present regardless of how many shards exist. Because it supports multiple writes per counter, it lessens the contention issue to whatever your needs are.
Sharded Reads
if you know the shard count, read every shard and sum them.
If you don't know the shard count, get it from the root shard and then read all and sum.
Because of slow update propogation, you can still miss counts in reading but they should get picked up later. This is sufficient for our needs, although if you wanted more control over this you could ensure that- when reading- the last timestamp was as you expect and retry.