Specific topics on Tensorflow for CNN - tensorboard

I have a mini project for my new course in Tensorflow for this semester with random topics. Since I have some background on Convolution Neuron Network, I intend to use it for my project. My computer can only run CPU version of TensorFlow.
However, as a new bee, I realize that there are a lot of topics such that MNIST, CIFAR-10, etc, thus I don't know which suitable topic I should pick out from them. I only have two weeks left. It would be great if the topic is not too complicated but too not easy for study because it matchs my intermediate level.
In your experience, could you give me some advice about the specific topic I should do for my project?
Moreover, it would be better if in this topic I can provide my own data to test my training, because my professor said that it is a plus point to get A grade in my project.
Thanks in advance,

I think that to answer this question you need to properly evaluate the marking criteria for your project. However, I can give you a brief overview of what you've just mentioned.
MNIST: MNIST is a Optical Character Recognition task for individual numbers 0-9 in images size 28px square. This is considered the "Hello World" of CNNs. It's pretty basic and might be too simplistic for your requirements. Hard to gauge without more information. Nonetheless, this will run pretty quickly with CPU Tensorflow and the online tutorial is pretty good.
CIFAR-10: CIFAR is a much bigger dataset of objects and vehicles. The image sizes are 32px square so individual image processing isn't too bad. But the dataset is very large and your CPU might struggle with it. It takes a long time to train. You could try training on a reduced dataset but I don't know how that would go. Again, depends on your course requirements.
Flowers-Poets: There is the Tensorflow for Poets re-training example which might not be suitable for your course, you could use the flowers dataset to build your own model.
Build-your-own-model: You could use tf.Layers to build your own network and experiment with it. tf.Layers is pretty easy to use. Alternatively you could look at the new Estimators API that will automate a lot of the training processes for you. There are a number of tutorials (of varying quality) on the Tensorflow website.
I hope that helps give you a run-down of what's out there. Other datasets to look at are PASCAL VOC and imageNet (however they are huge!). Models to look at experimenting with may include VGG-16 and AlexNet.

Related

machine learning for any cancer diagnosis on image dataset with python

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i am working on this project asssigned by university as final project. But the issue is i am not getting any help from the internet so i thought may be asking here can solve issue. i had read many articles but they had no code or guidance and i am confused what to do. Basically it is an image processing work with machine learning. Data set can be found easily but issue is python python learning algorithm and code
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I presume if it's your final project you have to create the program yourself rather than ripping it straight from the internet. If you want a good starting point which you can customise Tensor Flow from Google is very good. You'll want to understand how it works (i.e. how machine learning works) but as a first step there's a good example of image processing on the website in the form of number recognition (which is also the "Hello World" of machine learning).
https://www.tensorflow.org/get_started/mnist/beginners
This also provides a good intro to machine learning with neural nets: https://www.youtube.com/watch?v=uXt8qF2Zzfo
One note on Tensor Flow, you'll probably have to use Python 3.5+ as in my experience it can be difficult getting it on 2.7.
First of all I need to know what type of data are you using because depending on your data, if it is a MRI or PET scan or CT, there could be different suggestion for using machine learning in python for detection.
However, I suppose your main dataset consist of MR images, I am attaching an article which I found it a great overview of different methods>
This project compares four different machine learning algorithms: Decision Tree, Majority, Nearest Neighbors, and Best Z-Score (an algorithm of my own design that is a slight variant of the Na¨ıve Bayes algorithm)
https://users.soe.ucsc.edu/~karplus/abe/Science_Fair_2012_report.pdf
Here, breast cancer and colorectal cancer have been considered and the algorithms that performed best (Best Z-Score and Nearest Neighbors) used all features in classifying a sample. Decision Tree used only 13 features for classifying a sample and gave mediocre results. Majority did not look at any features and did worst. All algorithms except Decision Tree were fast to train and test. Decision Tree was slow, because it had to look at each feature in turn, calculating the information gain of every possible choice of cutpoint.
My Solution:-
Lung Image Database Consortium provides open access dataset for Lung Cancer Images.
Download it then apply any machine learning algorithm to classify images having tumor cells or not.
I attached a link for reference paper. They applied neural network to classify the images.
For coding part, use python "OpenCV" for image pre-processing and segmentation.
When it comes for classification part, use any machine learning libraries (tensorflow, keras, torch, scikit-learn... much more) as you are compatible to work with and perform classification using any better outperforming algorithms as you wish.
That's it..
Link for Reference Journal

Recognition of an animal in pictures

I am facing a challenging problem. On the courtyard of company I am working is a camera trap which takes a photo of every movement. On some of these pictures there are different kinds of animals (mostly deep gray mice) that cause damages to our cable system. My idea is to use some application that could recognize if there is a gray mouse on the picture or not. Ideally in realtime. So far we have developed a solution that sends alarms for every movement but most of alarms are false. Could you provide me some info about possible ways how to solve the problem?
In technical parlance, what you describe above is often called event detection. I know of no ready-made approach to solve all of this at once, but with a little bit of programming you should be all set even if you don't want to code any computer vision algorithms or some such.
The high-level pipeline would be:
Making sure that your video is of sufficient quality. Gray mice sound kind of tough, plus the pictures are probably taken at night - so you should have sufficient infrared lighting etc. But if a human can make it out whether an alarm is false or true, you should be fine.
Deploying motion detection and taking snapshot images at the time of movements. It seems like you have this part already worked out, great! Detailing your setup could benefit others. You may also need to crop only the area in motion from the image, are you doing that?
Building an archive of images, including your decision of whether they are false or true alarm (labels in machine learning parlance). Try to gather at least a few tens of example images for both cases, and make them representative of real-world variations (do you have the problem during daytime as well? is there snowfall in your region?).
Classifying the images taken from the video stream snapshot to check whether it's a false alarm or contains bad critters eating cables. This sounds tough, but deep learning and machine learning is making advances by leaps; you can either:
deploy your own neural network built in a framework like caffe or Tensorflow (but you will likely need a lot of examples, at least tens of thousands I'd say)
use an image classification API that recognizes general objects, like Clarifai or Imagga - if you are lucky, it will notice that the snapshots show a mouse or a squirrel (do squirrels chew on cables?), but it is likely that on a specialized task like this one, these engines will get pretty confused!
use a custom image classification API service which is typically even more powerful than rolling your own neural network since it can use a lot of tricks to sort out these images even if you give it just a small number of examples for each image category (false / true alarm here); vize.it is a perfect example of that (anyone can contribute more such services?).
The real-time aspect is a bit open-ended, as the neural networks take some time to process an image — you also need to include data transfer etc. when using a public API, but if you roll out your own, you will need to spend a lot of effort to get low latency as the frameworks are by default optimized for throughput (batch prediction). Generally, if you are happy with ~1s latency and have a good internet uplink, you should be fine with any service.
Disclaimer: I'm one of the co-creators of vize.it.
How about getting a cat?
Also, you could train your own custom classifier using the IBM Watson Visual Recognition service. (demo: https://visual-recognition-demo.mybluemix.net/train ) It's free to try and you just need to supply example images for the different categories you want to identify. Overall, Petr's answer is excellent.

Can I create a somewhat complex Mechanical Turk HIT without much programming experience?

I have a task that seems well-suited to Mturk. I've never before used the service, however, and despite reading through some of the documentation I'm having a difficult time judging how hard it would be to set up a task. I'm a strong beginner or weak intermediate in R. I've messed around with a project that involved a little understanding of XML. Otherwise, I have no programming or web development skills (I'm a statistician/epidemiologist). I'm hoping someone can give me an idea of what would be involved in creating my task so I can decide of it is worth the effort to learn how to create a HIT.
Essentially, I have recurring projects that require many graphs to be digitized (i.e. go from images to x,y coordinates). The automatic digitization software that I've tried isn't great for this task because some of the graphs are from old journal articles and they have gray-scale lines that cross each other multiple times. Figuring out which line is which requires a little human judgement. Workflow for the HIT would be to have each Mturker:
Download a properly named empty Excel workbook.
Download a JPEG of the graphs.
Download a free plot digitization program.
Open the graph in the plot digitization software, calibrate the axes, trace the outline of each curve, paste the coordinates into the corresponding Excel workbook that I have given them, extract some numbers off the graph into a second sheet of the same workbook.
Send me the Excel files.
I'd have these done in duplicate to make sure that there is acceptable agreement between the two Mturkers who did each graph.
Is this a reasonable task to accomplish via Mechanical Turk? If so, can a somewhat intelligent person who isn't a programmer/web developer pull it off? I've poked around the internet a bit but I still can't tell if I just haven't found the right resource to teach me how to do this or if I'd need 5 years of experience as a web developer to pull it off. Thanks.
No this really isn't a task for Mechanical Turk at all. Not only because you are requiring them to download a bunch of stuff which they won't do, but it's way too complex for them to have confidence they are doing it right and will get paid. Pay is binary so could go through all that for nothing.
You are also probably violating terms of service if they have to divulge personal info for the programs.
If you have a continuous need for this then MAYBE you can prequalify people by creating qualification on the service and then using just those workers.

Audio Subtitle Transcription - C++

I'm on a project that among other video related tasks should eventually be capable of extracting the audio of a video and apply some kind of speech recognition to it and get a transcribed text of what's said on the video. Ideally it should output some kind of subtitle format so that the text is linked to a certain point on the video.
I was thinking of using the Microsoft Speech API (aka SAPI). But from what I could see it is rather difficult to use. The very few examples that I found for speech recognition (most are for Text-To-Speech which mush easier) didn't perform very well (they don't recognize a thing). For example this one: http://msdn.microsoft.com/en-us/library/ms717071%28v=vs.85%29.aspx
Some examples use something called grammar files that are supposed to define the words that the recognizer is waiting for but since I haven't trained the Windows Speech Recognition thoroughly I think that might be adulterating the results.
So my question is... what's the best tool for something like this? Could you provide both paid and free options? Well the best "free" (as it comes with Windows) option I believe it's SAPI, all the rest should be paid but if they are really good it might be worth it. Also if you have any good tutorials for using SAPI (or other API) on a context similar to this it would be great.
On the whole this is a big ask!
The issue with any speech recognition system is that it functions best after training. It needs context (what words to expect) and some kind of audio benchmark (what does each voice sound like). This might be possible in some cases, such as a TV series if you wanted to churn through hours of speech -separated for each character- to train it. There's a lot of work there though. For something like a film there's probably no hope of training a recogniser unless you can get hold of the actors.
Most film and TV production companies just hire media companies to transcribe the subtitles based on either direct transcription using a human operator, or converting the script. The fact that they still need humans in the loop for these huge operations suggests that automated systems just aren't up to it yet.
In video you have a plethora of things that make you life difficult, pretty much spanning huge swathes of current speech technology research:
-> Multiple speakers -> "Speaker Identification" (can you tell characters apart? Also, subtitles normally have different coloured text for different speakers)
-> Multiple simultaneous speakers -> The "cocktail party problem" - can you separate the two voice components and transcribe both?
-> Background noise -> Can you pick the speech out from any soundtrack/foley/exploding helicopters.
The speech algorithm will need to be extremely robust as different characters can have different gender/accents/emotion. From what I understand of the current state of recognition you might be able to get a single speaker after some training, but asking a single program to nail all of them might be tough!
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There is no "subtitle" format that I'm aware of. I would suggest saving an image of the text using a font like Tiresias Screenfont that's specifically designed for legibility in these circumstances, and use a lookup table to cross-reference images against video timecode (remembering NTSC/PAL/Cinema use different timing formats).
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There's a bunch of proprietary speech recognition systems out there. If you want the best you'll probably want to license a solution off one of the big boys like Nuance. If you want to keep things free the universities of RWTH and CMU have put some solutions together. I have no idea how good they are or how well they might be suited to the problem.
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The only solution I can think of similar to what you're aiming at is the subtitling you can get on news channels here in the UK "Live Closed Captioning". Since it's live, I assume they use some kind of speech recognition system trained to the reader (although it might not be trained, I'm not sure). It's got better over the past few years, but on the whole it's still pretty poor. The biggest thing it seems to struggle with is speed. Dialogue is normally really fast, so live subtitling has the extra issue of getting everything done in time. Live closed captions quite frequently get left behind and have to miss a lot of content out to catch up.
Whether you have to deal with this depends on whether you'll be subtitling "live" video or if you can pre-process it. To deal with all the additional complications above I assume you'll need to pre-process it.
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As much as I hate citing the big W there's a goldmine of useful links here!
Good luck :)
This falls into the category of dictation, which is a very large vocabulary task. Products like Dragon Naturally Speaking are amazingly good and that has a SAPI interface for developers. But it's not so simple of a problem.
Normally a dictation product is meant to be single speaker and the best products adapt automatically to that speaker, thereby improving the underlying acoustic model. They also have sophisticated language modeling which serves to constrain the problem at any given moment by limiting what is known as the perplexity of the vocabulary. That's a fancy way of saying the system is figuring out what you're talking about and therefore what types of words and phrases are likely or not likely to come next.
It would be interesting though to apply a really good dictation system to your recordings and see how well it does. My suggestion for a paid system would be to get Dragon Naturally Speaking from Nuance and get the developer API. I believe that provides a SAPI interface, which has the benefit of allowing you to swap in the Microsoft speech or any other ASR engine that supports SAPI. IBM would be another vendor to look at but I don't think you will do much better than Dragon.
But it won't work well! After all the work of integrating the ASR engine, what you will probably find is that you get a pretty high error rate (maybe half). That would be due to a few major challenges in this task:
1) multiple speakers, which will degrade the acoustic model and adaptation.
2) background music and sound effects.
3) mixed speech - people talking over each other.
4) lack of a good language model for the task.
For 1) if you had a way of separating each actor on a separate track that would be ideal. But there's no reliable way of separating speakers automatically in a way that would be good enough for a speech recognizer. If each speaker were at a distinctly different pitch, you could try pitch detection (some free software out there for that) and separate based on that, but this is a sophisticated and error prone task.) The best thing would be hand editing the speakers apart, but you might as well just manually transcribe the speech at that point! If you could get the actors on separate tracks, you would need to run the ASR using different user profiles.
For music (2) you'd either have to hope for the best or try to filter it out. Speech is more bandlimited than music so you could try a bandpass filter that attenuates everything except the voice band. You would want to experiment with the cutoffs but I would guess 100Hz to 2-3KHz would keep the speech intelligible.
For (3), there's no solution. The ASR engine should return confidence scores so at best I would say if you can tag low scores, you could then go back and manually transcribe those bits of speech.
(4) is a sophisticated task for a speech scientist. Your best bet would be to search for an existing language model made for the topic of the movie. Talk to Nuance or IBM, actually. Maybe they could point you in the right direction.
Hope this helps.

Starting with Data Mining

I have started learning Data Mining and wish to create a small project in C++/Java that allows me to utilize a database, say from twitter and then publish a particular set of results (for eg. all the news items on a feed). I want to know how to go about it? Where should I start?
This is a really broad question, so it's hard to answer. Here are some things to consider:
Where are you going to get the data? You mention twitter, but you'll still need to collect the data in some way. There are probably libraries out there for listening to twitter streams, or you could probably buy the data if someone is selling it.
Where are you going to store the data? Depending on how much you'll have and what you plan to do with it, a traditional relational database may or may not be the best fit. You may be better off with something that supports running mapreduce jobs out-of-the box.
Based on the answers to those questions, the choice of programming languages and libraries will be easier to make.
If you're really set on Java, then I think a Hadoop cluster is probably what you want to start out with. It supports writing mapreduce jobs in Java, and works as an effective platform for other systems such as HBase, a column-oriented datastore.
If your data are going to be fairly regular (that is, not much variation in structure from one record to the next), maybe Hive would be a better fit. With Hive, you can write SQL-like queries, given only data files as input. I've never used Mahout, but I understand that its machine learning capabilities are suited for data mining tasks.
These are just some ideas that come to mind. There are lots of options out there and choosing between them has as much to do with the particular problem you're trying to solve and your own personal tastes as anything else.
If you just want to start learning about Data Mining there are two books that I particularly really enjoy:
Pattern Recognition and Machine Learning. Christopher M. Bishop. Springer.
And this one, which is for free:
http://infolab.stanford.edu/~ullman/mmds.html
Good references for you are
AI course taught by people who actually know the subject,Weka website, Machine Learning datasets, Even more datasets, Framework for supporting the mining of larger datasets.
The first link is a good introduction on AI taught by Peter Norvig and Sebastian Thrun, Google's Research Director, and Stanley's creator (the autonomous car), respectively.
The second link you get you to Weka website. Download the software - which is pretty intuitive - and get the book. Make sure you understand all the concepts: what's data mining, what's machine learning, what are the most common tasks, and what are the rationales behind them. Play a lot with the examples - the software package bundles some datasets - until you understand what generated the results.
Next, go to real datasets and play with them. When tackling massive datasets, you may face several performance issues with Weka - which is more of a learning tool as far as my experience can tell. Thus I recommend you to take a look at the fifth link, which will get you to Apache Mahout website.
It's far from being a simple topic, however, it's quite interesting.
I can tell you how I did it.
1) I got the data using twitter4j.
2) I analyzed the data using JUNG.
You have to define a class representing edges and a class representing vertices.
These classes will contain the attributes of the edges and vertices.
3) Then, there is a simple function to add an edge g.addedge(V1,V2,edgeFromV1ToV2) or to add a vertex g.addVertex(V).
The class that defines edges or vertices is easy to create. As an example :
`public class MyEdge {
int Id;
}`
The same is done for vertices.
Today I would do it with R, but if you don't want to learn a new programming language, just import jung which is a java library.
Data mining is broad fields with many different techniques; classification, clustering, association and pattern mining, outlier detection, etc.
You should first decide what you want to do and then decide wich algorithm you need.
If you are new to data mining, I would recommend to read some books like Introduction to Data Mining by Tan, Steinbach and Kumar.
I would like to suggest you to use python or R for data mining process. Doing work with java or c , it bit difficult in the sense you need to do a lot coding