Cmake file for C++/CUDA project - c++

Question

I'm having trouble compiling my application using cmake and make. The source files of the project are organized as follows:
SOURCE/
CMakeLists.txt
myApp.cc
include/
classA.hh
classB.hh
src/
classA.cc
classB.cc
classB.cu
My CMakeLists.txt file is as follows:
CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
PROJECT(myApp)
FIND_PACKAGE(VTK REQUIRED)
INCLUDE(${VTK_USE_FILE})
FIND_PACKAGE(GDCM REQUIRED)
IF(GDCM_FOUND)
INCLUDE(${GDCM_USE_FILE})
SET(GDCM_LIBRARIES gdcmCommon vtkgdcm)
ELSE(GDCM_FOUND)
MESSAGE(FATAL_ERROR "Cannot find GDCM, did you set GDCM_DIR?")
ENDIF(GDCM_FOUND)
SET(CUDA_TOOLKIT_ROOT_DIR="/Developer/NVIDIA/CUDA-7.5/")
FIND_PACKAGE(CUDA REQUIRED)
SET(CUDA_PROPAGATE_HOST_FLAGS ON)
SET(CUDA_NVCC_FLAGS ${CUDA_NVCC_FLAGS} -gencode arch=compute_30,code=sm_30)
SET(LIB_TYPE SHARED)
SET(CUDA_SEPARABLE_COMPILATION ON)
LINK_DIRECTORIES(/lib/FFTW/INSTALL/lib)
INCLUDE_DIRECTORIES(/lib/FFTW/INSTALL/include)
INCLUDE_DIRECTORIES(${PROJECT_SOURCE_DIR}/include)
FILE(GLOB headers ${PROJECT_SOURCE_DIR}/include/*.hh)
FILE(GLOB sources ${PROJECT_SOURCE_DIR}/src/*.cc)
FILE(GLOB cudafile ${PROJECT_SOURCE_DIR}/src/*.cu)
CUDA_ADD_EXECUTABLE(myApp myApp ${headers} ${sources} ${cudafile})
TARGET_LINK_LIBRARIES(myApp ${VTK_LIBRARIES} ${GDCM_LIBRARIES} fftw3)
When I try to compile the project using make (after successfully running cmake) I get:
nvcc fatal : A single input file is required for a non-link phase when an outputfile is specified
CMake Error at myApp_generated_classB.cu.o.cmake:207 (message):
Error generating
../BUILD/CMakeFiles/myApp.dir/src/./myApp_generated_classB.cu.o
Is breaking up the source file of a class into .cc and .cu files problematic?

Answer 1

This is not a comprehensive explanation of what exactly causes the problem stated in the question; nevertheless it solves the problem in a fairly satisfactory way.
First, apparently there is a conflict between using FIND_PACKAGE(VTK) (and hence FIND_PACKAGE(GDCM) which seems to require VTK CMake files for vtkgdcm) and nvcc. This has been recently reported on Mantis. To avoid this conflict, I use:
LINK_DIRECTORIES( {VTK_Directory}/INSTALL/lib)
INCLUDE_DIRECTORIES({VTK_Directory}/INSTALL/include/vtk-6.2)
LINK_DIRECTORIES( {GDCM_Directory}/INSTALL/lib)
INCLUDE_DIRECTORIES({GDCM_Directory}/INSTALL/include/gdcm-2.4)
instead of,
FIND_PACKAGE(VTK REQUIRED)
FIND_PACKAGE(GDCM REQUIRED)
Second, as for the CUDA part of the project, I put everything into a .cu file and use CUDA_COMPILE(cuda_o myCUDAstudff.cu) to create an object file. Then I use the native C++ compiler to create an executable as usual using ADD_EXECUTABLE( ... ${cuda_o}). Since I am using the native C++ compiler as opposed to nvcc, I need to include the following header files in my kernel (myCUDAstudff.cu) file:
#include <cuda.h>
#include <cuda_runtime.h>
and also link to libcudart in TARGET_LINK_LIBRARIES(), for which I used the shared library. I couldn't figure out a way to do the same with libcudart_static.a though.
Alternatively, one can use CUDA_ADD_EXECUTABLE(... myCUDAstudff.cu) instead of all the above steps (i.e., CUDA_COMPILE(), ADD_EXECUTABLE(),...).