Irregular Makefile Behaviour? - c++

I'm compiling a program with 3 source files: main.cpp, DataHandler.cpp and DataHandler.h.
I use a makefile that contains the following code to build:
Makefile
OBJECTS = main.o DataHandler.o
CC = g++
DEBUG = -g
CFLAGS = -c -std=c++11
LFLAGS = -lopendnp3 -lopenpal -lasiodnp3 -lasiopal -lpthread -std=c++11
lvoutstation : $(OBJECTS)
$(CC) $(LFLAGS) $(OBJECTS) -o lvoutstation
main.o : main.cpp DataHandler.h
$(CC) $(CFLAGS) main.cpp
DataHandler.o : DataHandler.cpp DataHandler.h
$(CC) $(CFLAGS) DataHandler.cpp
.PHONY : clean
clean :
rm lvoutstation $(OBJECTS)
It build main.o and DataHandler.o fine, but when it gets to compiling the action executable, it gives linking erros to all my asiodnp3 and opendnp3 namespace function / class calls.
When I run the following command:
g++ -o lvoutstation main.o DataHandler.o -lopendnp3 -lopenpal -lasiodnp3
-lasiopal -lpthread -std=c++11
It works fine..
I don't understand where the linking error comes in?
EDIT
Upon request for the error message:
g++ -lopendnp3 -lopenpal -lasiodnp3 -lasiopal -std=c++11 main.o DataHandler.o -o lvoutstation
main.o: In function `main':
main.cpp:(.text+0x85): undefined reference to `asiodnp3::DNP3Manager::DNP3Manager(unsigned int, openpal::ICryptoProvider*, std::function<void ()>, std::function<void ()>)'
main.cpp:(.text+0xb7): undefined reference to `asiodnp3::DNP3Manager::AddLogSubscriber(openpal::ILogHandler*)'
main.cpp:(.text+0xf0): undefined reference to `opendnp3::ChannelRetry::Default()'
main.cpp:(.text+0x123): undefined reference to `asiodnp3::DNP3Manager::AddTCPServer(char const*, unsigned int, opendnp3::ChannelRetry const&, std::string const&, unsigned short)'
main.cpp:(.text+0x19f): undefined reference to `opendnp3::EventBufferConfig::AllTypes(unsigned short)'
main.cpp:(.text+0x1d6): undefined reference to `opendnp3::DefaultOutstationApplication::Instance()'
main.cpp:(.text+0x2c8): undefined reference to `asiodnp3::DNP3Manager::~DNP3Manager()'
main.o: In function `opendnp3::LinkConfig::LinkConfig(bool, bool)':
main.cpp:(.text._ZN8opendnp310LinkConfigC2Ebb[_ZN8opendnp310LinkConfigC5Ebb]+0x75): undefined reference to `openpal::TimeDuration::Seconds(long)'
main.cpp:(.text._ZN8opendnp310LinkConfigC2Ebb[_ZN8opendnp310LinkConfigC5Ebb]+0x87): undefined reference to `openpal::TimeDuration::Minutes(long)'
main.o: In function `opendnp3::OutstationConfig::OutstationConfig()':
main.cpp:(.text._ZN8opendnp316OutstationConfigC2Ev[_ZN8opendnp316OutstationConfigC5Ev]+0x14): undefined reference to `opendnp3::OutstationParams::OutstationParams()'
main.cpp:(.text._ZN8opendnp316OutstationConfigC2Ev[_ZN8opendnp316OutstationConfigC5Ev]+0x56): undefined reference to `opendnp3::EventBufferConfig::EventBufferConfig(unsigned short, unsigned short, unsigned short, unsigned short, unsigned short, unsigned short, unsigned short, unsigned short)'
main.o: In function `asiodnp3::ConsoleLogger::Instance()':
main.cpp:(.text._ZN8asiodnp313ConsoleLogger8InstanceEv[_ZN8asiodnp313ConsoleLogger8InstanceEv]+0x5): undefined reference to `asiodnp3::ConsoleLogger::instance'
DataHandler.o: In function `DataHandler::ReadMeasurements(asiodnp3::IOutstation*)':
DataHandler.cpp:(.text+0xfe): undefined reference to `asiodnp3::MeasUpdate::MeasUpdate(asiodnp3::IOutstation*)'
DataHandler.cpp:(.text+0x11d): undefined reference to `opendnp3::Analog::Analog(double)'
DataHandler.cpp:(.text+0x137): undefined reference to `asiodnp3::MeasUpdate::Update(opendnp3::Analog const&, unsigned short, opendnp3::EventMode)'
DataHandler.cpp:(.text+0x159): undefined reference to `asiodnp3::MeasUpdate::~MeasUpdate()'
DataHandler.cpp:(.text+0x17b): undefined reference to `asiodnp3::MeasUpdate::~MeasUpdate()'
collect2: error: ld returned 1 exit status
make: *** [lvoutstation] Error 1

The makefile just works as expected. Your action becomes actually different from your command line sample
$(CC) $(LFLAGS) $(OBJECTS) -o lvoutstation
will expand to
g++ -lopendnp3 -lopenpal -lasiodnp3 -lasiopal -lpthread -std=c++11 \
main.o DataHandler.o -o lvoutstation
The order of object files and libraries matters for the linking process.
You can fix the linker errors providing the libraries after the object files:
$(CC) $(OBJECTS) $(LFLAGS) -o lvoutstation

Related

C ++ warning: relocation against ... undefined reference to

I've a problem compiling my C++ project using a makefile.
The structure of the project is like:
gui/:
Basicshape.cpp / .h
Functionable.cpp / .h
logic/:
Matrix.cpp/ .h
Cell.cpp/ .h
Item.cpp / .h
Position.cpp / .h
main.cpp
makefile
Here's the content of the makefile:
FLAGS=--std='c++20' -Wall -Wextra -Wpedantic -lfltk
all:CandyCrush
CandyCrush: main.o Matrice.o Cell.o Item.o Position.o BasicShape.o Functionable.o
g++ main.o Matrice.o Cell.o Item.o Position.o BasicShape.o Functionable.o -o CandyCrush
Cell.o: logic/Cell.h logic/Cell.cpp
g++ $(FLAGS) -c logic/Cell.cpp -o Cell.o
Item.o: logic/Item.h logic/Item.cpp
g++ $(FLAGS) -c logic/Item.cpp -o Item.o
Position.o: logic/Position.h logic/Position.cpp
g++ $(FLAGS) -c logic/Position.cpp -o Position.o
Matrice.o: logic/Matrice.h logic/Matrice.cpp
g++ $(FLAGS) -c logic/Matrice.cpp -o Matrice.o
BasicShape.o: gui/BasicShapes.h gui/BasicShapes.cpp
g++ $(FLAGS) -c gui/BasicShapes.cpp -o BasicShape.o
Functionable.o: gui/Functionable.h gui/Functionable.cpp
g++ $(FLAGS) -c gui/Functionable.cpp -o Functionable.o
main.o: main.cpp
g++ $(FLAGS) -c main.cpp -o main.o
clear:
rm *.o
I know it can be shortened but for debugging purposes and the fact than I'm still learning I prefer keeping this structure.
By typing make in my terminal, I've this error and I'm not sure why :
/usr/bin/ld: BasicShape.o: warning: relocation against `_ZTV9Rectangle' in read-only section `.text'
/usr/bin/ld: BasicShape.o: in function `Rectangle::Rectangle(Point, int, int, unsigned int, unsigned int)':
BasicShapes.cpp:(.text+0xdd): undefined reference to `vtable for Rectangle'
/usr/bin/ld: BasicShapes.cpp:(.text+0xf3): undefined reference to `vtable for Rectangle'
/usr/bin/ld: BasicShape.o: in function `Circle::Circle(Point, int, unsigned int, unsigned int)':
BasicShapes.cpp:(.text+0x225): undefined reference to `vtable for Circle'
/usr/bin/ld: BasicShapes.cpp:(.text+0x23b): undefined reference to `vtable for Circle'
/usr/bin/ld: warning: creating DT_TEXTREL in a PIE
collect2: error: ld returned 1 exit status
make: *** [makefile:6: CandyCrush] Error 1

Linker Error when compiling with static library [duplicate]

This question already has answers here:
Why does the order in which libraries are linked sometimes cause errors in GCC?
(9 answers)
Closed 6 years ago.
I have a project with several .cpp and .h files, and I am trying to split the source into core / generic stuff, and application specific code. Based on that, I separated the code files into a Common folder and compiled it as a library. Below is the Makefile for that lib:
CFLAGS=-std=c++11 -g -c -pedantic -Wall -Wextra -I../boost_1_57_0 -L../boost_1_57_0/stage/lib
SOURCES = $(wildcard *.cpp)
OBJECTS=$(SOURCES:.cpp=.o)
OUTPUTFILE=libcommon.a
all: $(OUTPUTFILE)
$(OUTPUTFILE): $(OBJECTS)
ar rcs $(OUTPUTFILE) $(OBJECTS)
.cpp.o:
$(CC) $(CPPFLAGS) $(CFLAGS) $< -o $# $(GPROF)
clean:
rm -f $(OBJECTS) $(OUTPUTFILE)
Then I created a sample main file just to try out the compilation of an app using that library.
Here is the code of the main source file:
#include "../Common/Functions.h"
#include "../Common/Logger.h"
int main() {
Logger::Init(false, false);
Logger::Debug("Test");
string path = Functions::GetAppPath();
Logger::Debug("App Path: ", path.c_str());
return 0;
}
The functions file that is being referenced uses boost, and here is the makefile for this app that uses the library:
CC=g++
CFLAGS=-Wl,--verbose -std=c++11 -g -c -pedantic -Wall -Wextra -I../boost_1_57_0 -L../boost_1_57_0/stage/lib
LDFLAGS=-I../boost_1_57_0 -L../boost_1_57_0/stage/lib -L../boost_libs/lib -L/usr/lib64 -L/usr/kerberos/lib -L/usr/lib -L../Common
LIBS=-lz -lkrb5 -lk5crypto -lcom_err -lresolv -lm -lpthread -lrt -lboost_system -lboost_filesystem -lboost_thread -lboost_date_time -rdynamic -lcurl -lcommon
SOURCES = $(wildcard *.cpp)
OBJECTS=$(SOURCES:.cpp=.o)
EXECUTABLE=testApp
GPROF=-pg
all: $(SOURCES) $(EXECUTABLE)
$(EXECUTABLE): $(OBJECTS)
$(CC) $(LDFLAGS) $(OBJECTS) -o $# $(LIBS) $(GPROF)
.cpp.o:
$(CC) $(CPPFLAGS) $(CFLAGS) $< -o $# $(GPROF)
clean:
rm -rf *o $(OBJECTS)
When I try to compile, I get the following errors, complaining about undefined references to boost:
g++ -Wl,--verbose -std=c++11 -g -c -pedantic -Wall -Wextra -I../boost_1_57_0 -L../boost_1_57_0/stage/lib main.cpp -o main.o -pg
g++ -I../boost_1_57_0 -L../boost_1_57_0/stage/lib -L../boost_libs/lib -L/usr/lib64 -L/usr/kerberos/lib -L/usr/lib -L../Common main.o -o testApp -lz -lkrb5 -lk5crypto -lcom_err -lresolv -lm -lpthread -lrt -lboost_system -lboost_filesystem -lboost_thread -lboost_date_time -rdynamic -lcurl -lcommon -pg
../Common/libcommon.a(Functions.o): In function `Functions::GetAppPath()':
/media/software/Robots/Common/Functions.cpp:43: undefined reference to `boost::filesystem::path::parent_path() const'
../Common/libcommon.a(Functions.o): In function `boost::filesystem::initial_path()':
/media/software/Robots/Common/../boost_1_57_0/boost/filesystem/operations.hpp:583: undefined reference to `boost::filesystem::detail::initial_path(boost::system::error_code*)'
../Common/libcommon.a(Functions.o): In function `boost::filesystem::system_complete(boost::filesystem::path const&)':
/media/software/Robots/Common/../boost_1_57_0/boost/filesystem/operations.hpp:655: undefined reference to `boost::filesystem::detail::system_complete(boost::filesystem::path const&, boost::system::error_code*)'
../Common/libcommon.a(Functions.o): In function `unsigned short boost::date_time::month_str_to_ushort<boost::gregorian::greg_month>(std::string const&)':
/media/software/Robots/Common/../boost_1_57_0/boost/date_time/date_parsing.hpp:67: undefined reference to `boost::gregorian::greg_month::get_month_map_ptr()'
../Common/libcommon.a(Logger.o): In function `Logger::Cleanup()':
/media/software/Robots/Common/Logger.cpp:84: undefined reference to `boost::thread::interrupt()'
../Common/libcommon.a(Logger.o): In function `Logger::InitFile(std::string, bool, std::_Ios_Openmode)':
/media/software/Robots/Common/Logger.cpp:186: undefined reference to `boost::filesystem::path::parent_path() const'
/media/software/Robots/Common/Logger.cpp:187: undefined reference to `boost::filesystem::path::parent_path() const'
../Common/libcommon.a(Logger.o): In function `Logger::Process()':
/media/software/Robots/Common/Logger.cpp:241: undefined reference to `boost::this_thread::interruption_point()'
../Common/libcommon.a(Logger.o): In function `boost::detail::thread_data_base::thread_data_base()':
/media/software/Robots/Common/../boost_1_57_0/boost/thread/pthread/thread_data.hpp:143: undefined reference to `vtable for boost::detail::thread_data_base'
../Common/libcommon.a(Logger.o): In function `boost::thread::start_thread()':
/media/software/Robots/Common/../boost_1_57_0/boost/thread/detail/thread.hpp:179: undefined reference to `boost::thread::start_thread_noexcept()'
../Common/libcommon.a(Logger.o): In function `boost::thread::~thread()':
/media/software/Robots/Common/../boost_1_57_0/boost/thread/detail/thread.hpp:254: undefined reference to `boost::thread::detach()'
../Common/libcommon.a(Logger.o): In function `boost::thread::get_id() const':
/media/software/Robots/Common/../boost_1_57_0/boost/thread/detail/thread.hpp:741: undefined reference to `boost::thread::native_handle()'
../Common/libcommon.a(Logger.o): In function `boost::thread::join()':
/media/software/Robots/Common/../boost_1_57_0/boost/thread/detail/thread.hpp:767: undefined reference to `boost::thread::join_noexcept()'
../Common/libcommon.a(Logger.o): In function `boost::filesystem::exists(boost::filesystem::path const&)':
/media/software/Robots/Common/../boost_1_57_0/boost/filesystem/operations.hpp:404: undefined reference to `boost::filesystem::detail::status(boost::filesystem::path const&, boost::system::error_code*)'
../Common/libcommon.a(Logger.o): In function `boost::filesystem::create_directories(boost::filesystem::path const&)':
/media/software/Robots/Common/../boost_1_57_0/boost/filesystem/operations.hpp:523: undefined reference to `boost::filesystem::detail::create_directories(boost::filesystem::path const&, boost::system::error_code*)'
../Common/libcommon.a(Logger.o): In function `boost::detail::thread_data<void (*)()>::~thread_data()':
/media/software/Robots/Common/../boost_1_57_0/boost/thread/detail/thread.hpp:90: undefined reference to `boost::detail::thread_data_base::~thread_data_base()'
../Common/libcommon.a(Logger.o):(.rodata._ZTIN5boost6detail11thread_dataIPFvvEEE[_ZTIN5boost6detail11thread_dataIPFvvEEE]+0x10): undefined reference to `typeinfo for boost::detail::thread_data_base'
collect2: error: ld returned 1 exit status
Needless to say that the project as a whole compiles with no issue.
This is my first attempt at building a c++ linux library and using it in another application, so I might be doing a rookie mistake, so bear that in mind.
Help is very much appreciated.
Thank you.
The order of libraries on the command line is significant to the linker. It processes libraries from left to right, resolving as-yet unresolved references already known to it against any functions provided by the current library.
Moreover, and particularly relevant here, if a given library contains references to functions that it does not itself provide then the linker does not resolve those against libraries it has already processed. That's why you have unresolved references: you have -lcommon last among your libraries, so function references therein will be resolved against only the C standard library.
It is valid to list libraries more than once in the link command, and sometimes that is needed, but in this case I think it makes sense simply to put -lcommon as the first library instead of the last. That will resolve the issue. You can even conceptualize this as putting the library most closely related to the main program closest to it in the link command.

Build brief module

I trying to build brief software. Firstly I create the ./lib/libbrief.so, and secondly I am trying to build main file. The makefile which included in .zip file:
CC=g++
SOURCES=main.cpp
OBJECTS=$(SOURCES:.cpp=.o)
EXECUTABLE=main
//#Only enable -msse4.2 on CPUs supporting the POPCNT instruction
CFLAGS = -Wall -DNDEBUG -O3 -march=nocona #-msse4.2
//#CFLAGS = -Wall -DDEBUG -g -O0 -fno-inline-functions
LDFLAGS = -Wl
//# BRIEF
CFLAGS += -I../brief/include
LDFLAGS += -L../brief/lib -lbrief
//# OpenCV
CFLAGS += `pkg-config opencv --cflags`
LDFLAGS += `pkg-config opencv --libs`
all: $(SOURCES) $(EXECUTABLE)
$(EXECUTABLE): $(OBJECTS)
$(CC) $(LDFLAGS) $(OBJECTS) -o $#
.cpp.o:
$(CC) -g -c $(CFLAGS) $< -o $#
clean:
rm -f $(OBJECTS) $(EXECUTABLE) matches.png
However I am getting errors, related with opencv. The errors found:
g++ -Wl -L../brief/lib -lbrief `pkg-config opencv --libs` main.o -o main
main.o: In function `~BRIEF':
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:203:
undefined reference to `cvReleaseImage'
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:204:
undefined reference to `cvReleaseImage'
main.o: In function `BRIEF':
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:156:
undefined reference to `cvCreateImage'
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:157:
undefined reference to `cvCreateImage'
main.o: In function `TestSampler<signed char>::sampleGaussian(signed char*, int, int)'
main.o: In function `BRIEF':
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:156:
undefined reference to `cvCreateImage'
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:157:
undefined reference to `cvCreateImage'
main.o: In function `TestSampler<signed char>::sampleGaussian(signed char*, int, int)':
main.o: In function `BRIEF::writeTests(std::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&) const':
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:511:
undefined reference to `utils::stdoutError(std::basic_string<char,
std::char_traits<char>,
std::allocator<char> >, char const*, int, char const*)'
main.o: In function `BRIEF::readTests(std::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
Desktop/asdf/brief_v1.0/test_app/../brief/include/brief/BRIEF.hpp:524:
undefined reference to `utils::stdoutError(std::basic_string<char,
std::char_traits<char>,
std::allocator<char> >, char const*, int, char const*)'
main.o: In function `detectSURF':
Desktop/asdf/brief_v1.0/test_app/main.cpp:92: undefined reference to
`cvCreateMemStorage'
Desktop/asdf/brief_v1.0/test_app/main.cpp:101: undefined reference to
`cvExtractSURF'
Desktop/asdf/brief_v1.0/test_app/main.cpp:106: undefined reference to
`cvGetSeqElem'
main.o: In function `timeDescription(int)':
Desktop/asdf/brief_v1.0/test_app/main.cpp:201: undefined reference to
`cvLoadImage'
Desktop/asdf/brief_v1.0/test_app/main.cpp:214: undefined reference to
`cvReleaseImage'
main.o: In function `~BRIEF':
What have to do to build proper the main.cpp?
You must list all the object files on the link like before the libraries that they use.
See, for example, Why does the order in which libraries are linked sometimes cause errors in GCC?

Boost::system link error on Ubuntu

I'm trying to compile the following c++ code that implements Context Tree Switching (More info on the download page):
Zip archive, 0.2 MB
which requires some boost libraries. I download the latest version from boost.org and built all libraries that needed building following the instructions on the website. I also modified the makefile included in the archive to add the boost lib path and boost_system, but I still get an error. Here's the makefile i'm using:
PROGRAM = cts
SOURCES = $(wildcard *.cpp)
OBJECTS = $(SOURCES:.cpp=.o)
CFLAGS = -Wall
LDFLAGS = -lboost_program_options -lboost_filesystem -lboost_system
$(PROGRAM): $(OBJECTS) Makefile
g++ $(CFLAGS) -L/home/users/mnembrini/opt/boost/lib $(LDFLAGS) -o $(PROGRAM) $(OBJECTS)
# Include known dependecies from -MMD
#-include $(OBJECTS:.o=.d)
%.o: %.cpp
g++ -MMD $(CFLAGS) -I/home/users/mnembrini/opt/boost/include -c $<
clean:
rm -f $(OBJECTS) *.d
.PHONY: clean
where boost is in ~/opt/boost (constains lib and include subdir). And here's the linking error:
mnembrini#meem:~/src/cts-v1 $ make
g++ -MMD -Wall -I/home/users/mnembrini/opt/boost/include -c ac.cpp
g++ -MMD -Wall -I/home/users/mnembrini/opt/boost/include -c cts.cpp
cts.cpp: In member function ‘virtual void SwitchingTree::update(bit_t)’:
cts.cpp:402:12: warning: variable ‘snc’ set but not used [-Wunused-but-set-variable]
cts.cpp: In member function ‘virtual double SwitchingTree::prob(bit_t)’:
cts.cpp:432:12: warning: variable ‘snc’ set but not used [-Wunused-but-set-variable]
g++ -MMD -Wall -I/home/users/mnembrini/opt/boost/include -c ctw.cpp
g++ -MMD -Wall -I/home/users/mnembrini/opt/boost/include -c icsilog.cpp
g++ -MMD -Wall -I/home/users/mnembrini/opt/boost/include -c main.cpp
g++ -MMD -Wall -I/home/users/mnembrini/opt/boost/include -c PowFast.cpp
g++ -Wall -L/home/users/mnembrini/opt/boost/lib -lboost_program_options -lboost_filesystem -lboost_system -o cts ac.o cts.o ctw.o icsilog.o main.o PowFast.o
cts.o: In function `__static_initialization_and_destruction_0(int, int)':
cts.cpp:(.text+0x1743): undefined reference to `boost::system::generic_category()'
cts.cpp:(.text+0x174f): undefined reference to `boost::system::generic_category()'
cts.cpp:(.text+0x175b): undefined reference to `boost::system::system_category()'
ctw.o: In function `__static_initialization_and_destruction_0(int, int)':
ctw.cpp:(.text+0xfcf): undefined reference to `boost::system::generic_category()'
ctw.cpp:(.text+0xfdb): undefined reference to `boost::system::generic_category()'
ctw.cpp:(.text+0xfe7): undefined reference to `boost::system::system_category()'
main.o: In function `showHelp()':
main.cpp:(.text+0x1c): undefined reference to `boost::program_options::operator<<(std::basic_ostream<char, std::char_traits<char> >&, boost::program_options::options_description const&)'
main.o: In function `initOptions(int, char**, boost::program_options::variables_map&)':
main.cpp:(.text+0x10f): undefined reference to `boost::program_options::options_description::add_options()'
main.cpp:(.text+0x129): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, char const*)'
main.cpp:(.text+0x13e): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
main.cpp:(.text+0x153): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
main.cpp:(.text+0x166): undefined reference to `boost::program_options::options_description_easy_init::operator()(char const*, boost::program_options::value_semantic const*, char const*)'
main.cpp:(.text+0x1d6): undefined reference to `boost::program_options::store(boost::program_options::basic_parsed_options<char> const&, boost::program_options::variables_map&, bool)'
main.cpp:(.text+0x200): undefined reference to `boost::program_options::notify(boost::program_options::variables_map&)'
main.o: In function `__static_initialization_and_destruction_0(int, int)':
main.cpp:(.text+0x1f13): undefined reference to `boost::system::generic_category()'
main.cpp:(.text+0x1f1f): undefined reference to `boost::system::generic_category()'
[snip (2-3 screens like above)]
collect2: ld returned 1 exit status
make: *** [cts] Error 1
I'm using Gcc 4.6.3 on Ubuntu 12.04 64bit.
Place all the libraries after all the object files within the command line. The order is important here, unlike on some other operating systems.
You need to (just like n.m earlier wrote) make sure you have the correct order of the linking.
Basically some implementations care about what order you link object but also libraries.
If you link a library that hasnt yet been referenced by previous code it will be discarded. I remember coming up with a solution to hack in different (versions of) libraries in a program by referencing the same symbol but in an object linked after the first one and then re-link another library version:
-lyourprojwantingv1 -llibraryofv1 -lyourprojwantingv2 -llibraryofv2
Personally i think this is all just madness! (All of it!)

Program won't compile anymore

I'm current working on a C++ that I edit locally on my Mac but run on an Ubuntu server. I always make sure that the code compiles on my mac before uploading it to the server to compile it there, where I have to use a makefile to link with libraries that are installed in my local directory. Basically, I had edited a significant portion of my code, found that it compiled on my mac, and uploaded it to the server to compile, but it doesn't compile! Luckily, I had a backup version of the code, so I tried that on the server, and that won't compile anymore either! In between the last time I knew that my code compiled on the server and now, I know that they ran some updates, but that's all I can think of that's different. For reference, here's my make file:
LOCAL_INCLUDE = /home/schraiber/.local/include
LOCAL_LIB = /home/schraiber/.local/lib
CXXFLAGS = -I$(LOCAL_INCLUDE)
CXX_LDFLAGS = -L$(LOCAL_LIB) -lgsl -lm -lgslcblas -lpthread
CoalHMMgf: main.o IOUtilities.o parameters.o Algorithms.o Optimization.o probabilities.o RNGUtilities.o Data.o ThreadData.h
g++ $(CXXFLAGS) $(CXX_LDFLAGS) main.o IOUtilities.o parameters.o Algorithms.o Optimization.o probabilities.o RNGUtilities.o Data.o -o CoalHMMgf
main.o: main.cpp IOUtilities.h parameters.h Algorithms.h Optimization.h probabilities.h ThreadData.h Data.h
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c main.cpp
IOutilities.o: IOUtilities.h IOUtilities.cpp parameters.h data.h
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c IOUtilities.cpp
parameters.o: parameters.h parameters.cpp
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c parameters.cpp
Algorithms.o: Algorithms.h Algorithms.cpp
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c Algorithms.cpp
Optimization.o: Optimization.h Optimization.cpp Algorithms.h parameters.h probabilities.h RNGUtilities.h ThreadData.h IOUtilities.h
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c Optimization.cpp
probabilities.o: probabilities.h probabilities.cpp parameters.h
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c probabilities.cpp
RNGUtilities.o: RNGUtilities.h RNGUtilities.cpp
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c RNGUtilities.cpp
Data.o: Data.h Data.cpp
g++ $(CXXFLAGS) $(CXX_LDFLAGS) -c Data.cpp
and the error:
g++ -I/home/schraiber/.local/include -L/home/schraiber/.local/lib -lgsl -lm -lgslcblas -lpthread main.o IOUtilities.o parameters.o Algorithms.o Optimization.o probabilities.o RNGUtilities.o Data.o -o CoalHMMgf
main.o: In function `main':
main.cpp:(.text+0xbf1): undefined reference to `pthread_create'
main.cpp:(.text+0xd0e): undefined reference to `pthread_join'
Optimization.o: In function `my_df(gsl_vector const*, void*, gsl_vector*)':
Optimization.cpp:(.text+0x3149): undefined reference to `gsl_vector_alloc'
Optimization.cpp:(.text+0x316b): undefined reference to `gsl_vector_get'
Optimization.cpp:(.text+0x3180): undefined reference to `gsl_vector_set'
Optimization.cpp:(.text+0x31bc): undefined reference to `gsl_vector_get'
Optimization.cpp:(.text+0x31ec): undefined reference to `gsl_vector_set'
Optimization.cpp:(.text+0x323b): undefined reference to `gsl_vector_set'
Optimization.cpp:(.text+0x327e): undefined reference to `gsl_vector_set'
Optimization.cpp:(.text+0x32c9): undefined reference to `gsl_vector_set'
Optimization.o: In function `MHthreaded(void*)':
Optimization.cpp:(.text+0x3489): undefined reference to `gsl_rng_env_setup'
Optimization.cpp:(.text+0x3490): undefined reference to `gsl_rng_default'
Optimization.cpp:(.text+0x360b): undefined reference to `gsl_rng_uniform'
Optimization.cpp:(.text+0x3653): undefined reference to `gsl_ran_gaussian'
Optimization.cpp:(.text+0x3686): undefined reference to `gsl_ran_gaussian'
Optimization.cpp:(.text+0x377f): undefined reference to `gsl_rng_uniform'
RNGUtilities.o: In function `AllocRNG(gsl_rng*&, gsl_rng_type const*, int)':
RNGUtilities.cpp:(.text+0x9a): undefined reference to `gsl_rng_alloc'
RNGUtilities.cpp:(.text+0xba): undefined reference to `gsl_rng_set'
RNGUtilities.o: In function `FreeRNG(gsl_rng*&)':
RNGUtilities.cpp:(.text+0xe3): undefined reference to `gsl_rng_free'
collect2: ld returned 1 exit status
make: *** [CoalHMMgf] Error 1
and just to verify that gsl is installed in the local directory:
schraiber#trump:~/test_rsync$ ls ~/.local/lib
libbpp-core.a libbpp-core.so.2.0.0 libbpp-seq.so.9 libgslcblas.a libgslcblas.so.0 libgsl.so pkgconfig
libbpp-core.so libbpp-seq.a libbpp-seq.so.9.1.0 libgslcblas.la libgslcblas.so.0.0.0 libgsl.so.0 python2.7
libbpp-core.so.2 libbpp-seq.so libgsl.a libgslcblas.so libgsl.la libgsl.so.0.16.0
schraiber#trump:~/test_rsync$ ls ~/.local/include/
Bpp gsl
An interesting thing to note is that my program is also supposed to link with Bpp, and it does that just fine as far as I can tell.
Your "-lfoo" parameters should come last on your "g++" command line. So, for example, make this change in your makefile:
CoalHMMgf: main.o IOUtilities.o parameters.o Algorithms.o Optimization.o probabilities.o RNGUtilities.o Data.o ThreadData.h
g++ $(CXXFLAGS) main.o IOUtilities.o parameters.o Algorithms.o Optimization.o probabilities.o RNGUtilities.o Data.o -o CoalHMMgf $(CXX_LDFLAGS)
Libraries have to be defined on the link line such that the library containing no other references is the very last one. Libraries that depend on code from a second library need to be listed first. They must be listed after the .o files, or else the .o files are assumed to be self-contained and don't need the libraries.