Currently I am implementing a multi-processing application. Different processes seldom share data, instead each process will work on its own pre-divided chunk of data for most of the time. With that said, these processes are pretty independent, except occasionally they communicate for control or feedback purposes, and collecting results in the end.
So my question is, is there any reason I should choose MPI over other inter-process mechanisms? Or is there any reason preventing me from choosing MPI?
I am not sure if on a single node, MPI is efficient enough.
MPI is an interface that let you to communicate between multiple process. When your processes are not communicating together (with the MPI code) and not doing parallelized code, they are not more or less eficient than a standalone process.
MPI is made for high performance, scalability, and portability. Most of the time MPI is used for scientific computing because of it's caracteristics that I enumeratate. It helps scientifics to save time.
The communication interface include function like broadcast, scatter, gather, reduction that help to reduce time of processing. In other communication mechanisme (most of them) you need to think about the efficient part of your communication by yourself.
If you only need a simple communication with two process, and the processing time is not a concern, you should use the inter-process message passing mechanismes of your OS. Sometimes MPI become tricky and difficult if you don't follow the idea for what MPI is made. And if you are juste begining to that, I think it's better for your to begin with OS mechanisms.
Hope that helps
Captain Wise spoke to the efficiency aspect. Consider the maintainability aspect as well.
If you use MPI and your code grows more complex and larger and some day needs to run on more than one node, then your porting and tuning effort might be as simple as "run on more than one node" -- presuming, of course, that your MPI implementation is clever enough to skip the networking stack when a message is passed on the same node.
If you want to show your code to a future collaborator, its likely they will know MPI if you are at all affiliated with HPC environments, and your possible future collaborator can just dive in and help you. The pool of Chapel or UPC users is a bit smaller (though if you use Chapel, Brad Chamberlain will work insanely hard to ensure you have a good experience)
For using all the cores of a quad core processor what do I need to change in my code is it about adding support of multi threading or is it which is taken care by OS itself. I am having FreeBSD and language I am using is C++. I want to give complete CPU cycles to my application at least 90%.
You need some form of parallelism. Multi-threading or multi-processing would be fine.
Usually, multiple threads are easier to handle (since they can access shared data) than multiple processes. However, usually, multiple threads are harder to handle (since they access shared data) than multiple processes.
And, yes, I wrote this deliberately.
If you have a SIMD scenario, Ninefingers' suggestion to look at OpenMP is also very good. (If you don't know what SIMD means, see Ninefingers' helpful comment below.)
For multi-threaded applications in C++ may I suggest Boost.Thread which should help you access the full potential of your quad-core machine.
As for changing your code, you might want to consider making things as immutable as possible. State transitions between threads are much more difficult to debug. There a plethora of things that could potentially happen in unexpected ways. See this SO thread.
Another option not mentioned here, threading aside, is the use of OpenMP available via the -fopenmp and the libgomp library, both of which I have installed on my FreeBSD 8 system.
These give you #pragma directives to parallelise certain loops, while statements etc i.e. the bits you can parallelise. It takes care of threading and cpu association for you. Note it is a general solution and therefore might not be the optimum way to parallelise, but it will allow you to parallelise certain routines.
Take a look at this: https://computing.llnl.gov/tutorials/openMP/
As for using threads/processes themselves, certain routines and ways of working lend themselves to it. Can you break tasks out into such a way? Does it make sense to fork() your process or create a thread? If so, do so, but if not, don't try to force your application to be multi-threaded just because. An example I usually give is the greatest common divisor algorithm - it relies on the step before all the time in the traditional implementation therefore is difficult to make parallel.
Also note it is well known that for certain algorithms, parallelisation is actually slower for small values of whatever you are doing in parallel, because although the jobs complete more quickly, the associated time cost of forking and joining (be that threads or processes) actually pushes the time above that of a serial implementation.
I think your only option is to run several threads. If your application is single-threaded, then it will only run on one of the cores (at a time), but if you have more threads, they can run simultaneously.
You need to add support to your application for parallelism through the use of Threading.
Once you have support for parallelism, it's up to the OS to assign your threads to CPU cores.
The first thing I think you should look at is whether your application and its algorithms are suited to be executed in parellel (or possibly as a set of serial tasks that can be processed independently). If this is not the case, it will be difficult to multithread it or break it up into parallel processes, and you may need to look into modifying the way it works.
Once you have established that you will be able to benefit from parallel processing you have the option to either use several processes or threads. The choice depends a lot on the nature of your application and how independent the parallel processes can be. It is easier to coordinate and share data between threads since they are in the same process, but also quite a bit more challenging to develop and debug.
Boost.Thread is a good library if you decide to go down the multi-threaded route.
I want to give complete CPU cycles to my application at least 90%.
Why? Your chip's not hot enough?
Seriously, it takes world experts dozens if not hundreds of hours to parallelize and load-balance an application so that it uses 90% of all four cores. Your CPU is already paid for and it costs the same whether you use it or not. (Actually, it costs slightly less to run, electrically speaking, if you don't use it.) How much is your time worth? How many hours are you willing to invest in order to make more effective use of a resource that may have cost you $300 and is probably sitting idle most of the time anyway?
It's possible to get speedups through parallelism, but it's expensive in human time. You need a good reason to justify it. (Learning how is a good enough reason.)
All the good books I know on parallel programming are for languages other than C++, and for good reason. If you want interesting stuff on parallelism check out Implicit Parallel Programmin in pH or Concurrent Programming in ML or the Fortress Project.
I'm currently working on a wireless networking application in C++ and it's coming to a point where I'm going to want to multi-thread pieces of software under one process, rather than have them all in separate processes. Theoretically, I understand multi-threading, but I've yet to dive in practically.
What should every programmer know when writing multi-threaded code in C++?
I would focus on design the thing as much as partitioned as possible so you have the minimal amount of shared things across threads. If you make sure you don't have statics and other resources shared among threads (other than those that you would be sharing if you designed this with processes instead of threads) you would be fine.
Therefore, while yes, you have to have in mind concepts like locks, semaphores, etc, the best way to tackle this is to try to avoid them.
I am no expert at all in this subject. Just some rule of thumb:
Design for simplicity, bugs really are hard to find in concurrent code even in the simplest examples.
C++ offers you a very elegant paradigm to manage resources(mutex, semaphore,...): RAII. I observed that it is much easier to work with boost::thread than to work with POSIX threads.
Build your code as thread-safe. If you don't do so, your program could behave strangely
I am exactly in this situation: I wrote a library with a global lock (many threads, but only one running at a time in the library) and am refactoring it to support concurrency.
I have read books on the subject but what I learned stands in a few points:
think parallel: imagine a crowd passing through the code. What happens when a method is called while already in action ?
think shared: imagine many people trying to read and alter shared resources at the same time.
design: avoid the problems that points 1 and 2 can raise.
never think you can ignore edge cases, they will bite you hard.
Since you cannot proof-test a concurrent design (because thread execution interleaving is not reproducible), you have to ensure that your design is robust by carefully analyzing the code paths and documenting how the code is supposed to be used.
Once you understand how and where you should bottleneck your code, you can read the documentation on the tools used for this job:
Mutex (exclusive access to a resource)
Scoped Locks (good pattern to lock/unlock a Mutex)
Semaphores (passing information between threads)
ReadWrite Mutex (many readers, exclusive access on write)
Signals (how to 'kill' a thread or send it an interrupt signal, how to catch these)
Parallel design patterns: boss/worker, producer/consumer, etc (see schmidt)
platform specific tools: openMP, C blocks, etc
Good luck ! Concurrency is fun, just take your time...
You should read about locks, mutexes, semaphores and condition variables.
One word of advice, if your app has any form of UI make sure you always change it from the UI thread. Most UI toolkits/frameworks will crash (or behave unexpectedly) if you access them from a background thread. Usually they provide some form of dispatching method to execute some function in the UI thread.
Never assume that external APIs are threadsafe. If it is not explicitly stated in their docs, do not call them concurrently from multiple threads. Instead, limit your use of them to a single thread or use a mutex to prevent concurrent calls (this is rather similar to the aforementioned GUI libraries).
Next point is language-related. Remember, C++ has (currently) no well-defined approach to threading. The compiler/optimizer does not know if code might be called concurrently. The volatile keyword is useful to prevent certain optimizations (i.e. caching of memory fields in CPU registers) in multi-threaded contexts, but it is no synchronization mechanism.
I'd recommend boost for synchronization primitives. Don't mess with platform APIs. They make your code difficult to port because they have similar functionality on all major platforms, but slightly different detail behaviour. Boost solves these problems by exposing only common functionality to the user.
Furthermore, if there's even the smallest chance that a data structure could be written to by two threads at the same time, use a synchronization primitive to protect it. Even if you think it will only happen once in a million years.
One thing I've found very useful is to make the application configurable with regard to the actual number of threads it uses for various tasks. For example, if you have multiple threads accessing a database, make the number of those threads be configurable via a command line parameter. This is extremely handy when debugging - you can exclude threading issues by setting the number to 1, or force them by setting it to a high number. It's also very handy when working out what the optimal number of threads is.
Make sure you test your code in a single-cpu system and a multi-cpu system.
Based on the comments:-
Single socket, single core
Single socket, two cores
Single socket, more than two cores
Two sockets, single core each
Two sockets, combination of single, dual and multi core cpus
Mulitple sockets, combination of single, dual and multi core cpus
The limiting factor here is going to be cost. Ideally, concentrate on the types of system your code is going to run on.
In addition to the other things mentioned, you should learn about asynchronous message queues. They can elegantly solve the problems of data sharing and event handling. This approach works well when you have concurrent state machines that need to communicate with each other.
I'm not aware of any message passing frameworks tailored to work only at the thread level. I've only seen home-brewed solutions. Please comment if you know of any existing ones.
EDIT:
One could use the lock-free queues from Intel's TBB, either as-is, or as the basis for a more general message-passing queue.
Since you are a beginner, start simple. First make it work correctly, then worry about optimizations. I've seen people try to optimize by increasing the concurrency of a particular section of code (often using dubious tricks), without ever looking to see if there was any contention in the first place.
Second, you want to be able to work at as high a level as you can. Don't work at the level of locks and mutexs if you can using an existing master-worker queue. Intel's TBB looks promising, being slightly higher level than pure threads.
Third, multi-threaded programming is hard. Reduce the areas of your code where you have to think about it as much as possible. If you can write a class such that objects of that class are only ever operated on in a single thread, and there is no static data, it greatly reduces the things that you have to worry about in the class.
A few of the answers have touched on this, but I wanted to emphasize one point:
If you can, make sure that as much of your data as possible is only accessible from one thread at a time. Message queues are a very useful construct to use for this.
I haven't had to write much heavily-threaded code in C++, but in general, the producer-consumer pattern can be very helpful in utilizing multiple threads efficiently, while avoiding the race conditions associated with concurrent access.
If you can use someone else's already-debugged code to handle thread interaction, you're in good shape. As a beginner, there is a temptation to do things in an ad-hoc fashion - to use a "volatile" variable to synchronize between two pieces of code, for example. Avoid that as much as possible. It's very difficult to write code that's bulletproof in the presence of contending threads, so find some code you can trust, and minimize your use of the low-level primitives as much as you can.
My top tips for threading newbies:
If you possibly can, use a task-based parallelism library, Intel's TBB being the most obvious one. This insulates you from the grungy, tricky details and is more efficient than anything you'll cobble together yourself. The main downside is this model doesn't support all uses of multithreading; it's great for exploiting multicores for compute power, less good if you wanted threads for waiting on blocking I/O.
Know how to abort threads (or in the case of TBB, how to make tasks complete early when you decide you didn't want the results after all). Newbies seem to be drawn to thread kill functions like moths to a flame. Don't do it... Herb Sutter has a great short article on this.
Make sure to explicitly know what objects are shared and how they are shared.
As much as possible make your functions purely functional. That is they have inputs and outputs and no side effects. This makes it much simpler to reason about your code. With a simpler program it isn't such a big deal but as the complexity rises it will become essential. Side effects are what lead to thread-safety issues.
Plays devil's advocate with your code. Look at some code and think how could I break this with some well timed thread interleaving. At some point this case will happen.
First learn thread-safety. Once you get that nailed down then you move onto the hard part: Concurrent performance. This is where moving away from global locks is essential. Figuring out ways to minimize and remove locks while still maintaining the thread-safety is hard.
Keep things dead simple as much as possible. It's better to have a simpler design (maintenance, less bugs) than a more complex solution that might have slightly better CPU utilization.
Avoid sharing state between threads as much as possible, this reduces the number of places that must use synchronization.
Avoid false-sharing at all costs (google this term).
Use a thread pool so you're not frequently creating/destroying threads (that's expensive and slow).
Consider using OpenMP, Intel and Microsoft (possibly others) support this extension to C++.
If you are doing number crunching, consider using Intel IPP, which internally uses optimized SIMD functions (this isn't really multi-threading, but is parallelism of a related sorts).
Have tons of fun.
Stay away from MFC and it's multithreading + messaging library.
In fact if you see MFC and threads coming toward you - run for the hills (*)
(*) Unless of course if MFC is coming FROM the hills - in which case run AWAY from the hills.
The biggest "mindset" difference between single-threaded and multi-threaded programming in my opinion is in testing/verification. In single-threaded programming, people will often bash out some half-thought-out code, run it, and if it seems to work, they'll call it good, and often get away with it using it in a production environment.
In multithreaded programming, on the other hand, the program's behavior is non-deterministic, because the exact combination of timing of which threads are running for which periods of time (relative to each other) will be different every time the program runs. So just running a multithreaded program a few times (or even a few million times) and saying "it didn't crash for me, ship it!" is entirely inadequate.
Instead, when doing a multithreaded program, you always should be trying to prove (at least to your own satisfaction) that not only does the program work, but that there is no way it could possibly not work. This is much harder, because instead of verifying a single code-path, you are effectively trying to verify a near-infinite number of possible code-paths.
The only realistic way to do that without having your brain explode is to keep things as bone-headedly simple as you can possibly make them. If you can avoid using multithreading totally, do that. If you must do multithreading, share as little data between threads as possible, and use proper multithreading primitives (e.g. mutexes, thread-safe message queues, wait conditions) and don't try to get away with half-measures (e.g. trying to synchronize access to a shared piece of data using only boolean flags will never work reliably, so don't try it)
What you want to avoid is the multithreading hell scenario: the multithreaded program that runs happily for weeks on end on your test machine, but crashes randomly, about once a year, at the customer's site. That kind of race-condition bug can be nearly impossible to reproduce, and the only way to avoid it is to design your code extremely carefully to guarantee it can't happen.
Threads are strong juju. Use them sparingly.
You should have an understanding of basic systems programing, in particular:
Synchronous vs Asynchronous I/O (blocking vs. non-blocking)
Synchronization mechanisms, such as lock and mutex constructs
Thread management on your target platform
I found viewing the introductory lectures on OS and systems programming here by John Kubiatowicz at Berkeley useful.
Part of my graduate study area relates to parallelism.
I read this book and found it a good summary of approaches at the design level.
At the basic technical level, you have 2 basic options: threads or message passing. Threaded applications are the easiest to get off the ground, since pthreads, windows threads or boost threads are ready to go. However, it brings with it the complexity of shared memory.
Message-passing usability seems mostly limited at this point to the MPI API. It sets up an environment where you can run jobs and partition your program between processors. It's more for supercomputer/cluster environments where there's no intrinsic shared memory. You can achieve similar results with sockets and so forth.
At another level, you can use language type pragmas: the popular one today is OpenMP. I've not used it, but it appears to build threads in via preprocessing or a link-time library.
The classic problem is synchronization here; all the problems in multiprogramming come from the non-deterministic nature of multiprograms, which can not be avoided.
See the Lamport timing methods for a further discussion of synchronizations and timing.
Multithreading is not something that only Ph.D.`s and gurus can do, but you will have to be pretty decent to do it without making insane bugs.
I'm in the same boat as you, I am just starting multi threading for the first time as part of a project and I've been looking around the net for resources. I found this blog to be very informative. Part 1 is pthreads, but I linked starting on the boost section.
I have written a multithreaded server application and a multithreaded shellsort. They were both written in C and use NT's threading functions "raw" that is without any function library in-between to muddle things. They were two quite different experiences with different conclusions to be drawn. High performance and high reliability were the main priorities although coding practices had a higher priority if one of the first two was judged to be threatened in the long term.
The server application had both a server and a client part and used iocps to manage requests and responses. When using iocps it is important never to use more threads than you have cores. Also I found that requests to the server part needed a higher priority so as not to lose any requests unnecessarily. Once they were "safe" I could use lower priority threads to create the server responses. I judged that the client part could have an even lower priority. I asked the questions "what data can't I lose?" and "what data can I allow to fail because I can always retry?" I also needed to be able to interface to the application's settings through a window and it had to be responsive. The trick was that the UI had normal priority, the incoming requests one less and so on. My reasoning behind this was that since I will use the UI so seldom it can have the highest priority so that when I use it it will respond immediately. Threading here turned out to mean that all separate parts of the program in the normal case would/could be running simultaneously but when the system was under higher load, processing power would be shifted to the vital parts due to the prioritization scheme.
I've always liked shellsort so please spare me from pointers about quicksort this or that or blablabla. Or about how shellsort is ill-suited for multithreading. Having said that, the problem I had had to do with sorting a semi-largelist of units in memory (for my tests I used a reverse-sorted list of one million units of forty bytes each. Using a single-threaded shellsort I could sort them at a rate of roughly one unit every two us (microseconds). My first attempt to multithread was with two threads (though I soon realized that I wanted to be able to specify the number of threads) and it ran at about one unit every 3.5 seconds, that is to say SLOWER. Using a profiler helped a lot and one bottleneck turned out to be the statistics logging (i e compares and swaps) where the threads would bump into each other. Dividing up the data between the threads in an efficient way turned out to be the biggest challenge and there is definitley more I can do there such as dividing the vector containing the indeces to the units in cache-line size adapted chunks and perhaps also comparing all indeces in two cache lines before moving to the next line (at least I think there is something I can do there - the algorithms get pretty complicated). In the end, I achieved a rate of one unit every microsecond with three simultaneous threads (four threads about the same, I only had four cores available).
As to the original question my advice to you would be
If you have the time, learn the threading mechanism at the lowest possible level.
If performance is important learn the related mechanisms that the OS provides. Multi-threading by itself is seldom enough to achieve an application's full potential.
Use profiling to understand the quirks of multiple threads working on the same memory.
Sloppy architectural work will kill any app, regardless of how many cores and systems you have executing it and regardless of the brilliance of your programmers.
Sloppy programming will kill any app, regardless of the brilliance of the architectural foundation.
Understand that using libraries lets you reach the development goal faster but at the price of less understanding and (usually) lower performance .
Before giving any advice on do's and dont's about multi-thread programming in C++, I would like to ask the question Is there any particular reason you want to start writing the application in C++?
There are other programming paradigms where you utilize the multi-cores without getting into multi-threaded programming. One such paradigm is functional programming. Write each piece of your code as functions without any side effects. Then it is easy to run it in multiple thread without worrying about synchronization.
I am using Erlang for my development purpose. It has increased by productivity by at least 50%. Code running may not be as fast as the code written in C++. But I have noticed that for most of the back-end offline data processing, speed is not as important as distribution of work and utilizing the hardware as much as possible. Erlang provides a simple concurrency model where you can execute a single function in multiple-threads without worrying about the synchronization issue. Writing multi-threaded code is easy, but debugging that is time consuming. I have done multi-threaded programming in C++, but I am currently happy with Erlang concurrency model. It is worth looking into.
Make sure you know what volatile means and it's uses(which may not be obvious at first).
Also, when designing multithreaded code, it helps to imagine that an infinite amount of processors is executing every single line of code in your application at once. (er, every single line of code that is possible according to your logic in your code.) And that everything that isn't marked volatile the compiler does a special optimization on it so that only the thread that changed it can read/set it's true value and all the other threads get garbage.
I am quite excited by the possibility of using languages which have parallelism / concurrency built in, such as stackless python and erlang, and have a firm belief that we'll all have to move in that direction before too long - or will want to because it will be a good/easy way to get to scalability and performance.
However, I am so used to thinking about solutions in a linear/serial/OOP/functional way that I am struggling to cast any of my domain problems in a way that merits using concurrency. I suspect I just need to unlearn a lot, but I thought I would ask the following:
Have you implemented anything reasonably large in stackless or erlang or other?
Why was it a good choice? Was it a good choice? Would you do it again?
What characteristics of your problem meant that concurrent/parallel was right?
Did you re-cast an exising problem to take advantage of concurrency/parallelism? and
if so, how?
Anyone any experience they are willing to share?
in the past when desktop machines had a single CPU, parallelization only applied to "special" parallel hardware. But these days desktops have usually from 2 to 8 cores, so now the parallel hardware is the standard. That's a big difference and therefore it is not just about which problems suggest parallelism, but also how to apply parallelism to a wider set of problems than before.
In order to be take advantage of parallelism, you usually need to recast your problem in some ways. Parallelism changes the playground in many ways:
You get the data coherence and locking problems. So you need to try to organize your problem so that you have semi-independent data structures which can be handled by different threads, processes and computation nodes.
Parallelism can also introduce nondeterminism into your computation, if the relative order in which the parallel components do their jobs affects the results. You may need to protect against that, and define a parallel version of your algorithm which is robust against different scheduling orders.
When you transcend intra-motherboard parallelism and get into networked / cluster / grid computing, you also get the issues of network bandwidth, network going down, and the proper management of failing computational nodes. You may need to modify your problem so that it becomes easier to handle the situations where part of the computation gets lost when a network node goes down.
Before we had operating systems people building applications would sit down and discuss things like:
how will we store data on disks
what file system structure will we use
what hardware will our application work with
etc, etc
Operating systems emerged from collections of 'developer libraries'.
The beauty of an operating system is that your UNWRITTEN software has certain characteristics, it can:
talk to permanent storage
talk to the network
run in a command line
be used in batch
talk to a GUI
etc, etc
Once you have shifted to an operating system - you don't go back to the status quo ante...
Erlang/OTP (ie not Erlang) is an application system - it runs on two or more computers.
The beauty of an APPLICATION SYSTEM is that your UNWRITTEN software has certain characteristics, it can:
fail over between two machines
work in a cluster
etc, etc...
Guess what, once you have shifted to an Application System - you don't go back neither...
You don't have to use Erlang/OTP, Google have a good Application System in their app engine, so don't get hung up about the language syntax.
There may well be good business reasons to build on the Erlang/OTP stack not the Google App Engine - the biz dev guys in your firm will make that call for you.
The problems will stay almost the same inf future, but the underlying hardware for the realization is changing. To use this, the way of compunication between objects (components, processes, services, how ever you call it) will change. Messages will be sent asynchronously without waiting for a direct response. Instead after a job is done the process will call the sender back with the answer. It's like people working together.
I'm currently designing a lightweighted event-driven architecture based on Erlang/OTP. It's called Tideland EAS. I'm describing the ideas and principles here: http://code.google.com/p/tideland-eas/wiki/IdeasAndPrinciples. It's not ready, but maybe you'll understand what I mean.
mue
Erlang makes you think of the problem in parallel. You won't forget it one second. After a while you adapt. Not a big problem. Except the solution become parallel in every little corner. All other languages you have to tweak. To be concurrent. And that doesn't feel natural. Then you end up hating your solution. Not fun.
The biggest advantages Erlang have is that it got no global garbage collect. It will never take a break. That is kind of important, when you have 10000 page views a second.