I am attempting to install libzdb on my macbook however I see the following error message when running the configure:
configure:13334: error: setjmp is required
the setjmp.h file resides within /usr/include and is specified within my "$PATH" as
/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/usr/include
Can someone please advise as to how i can rectify this issue?
thanks in advance
I've stumbled across this error while building one of my own programs when I wanted to use setjmp() and longjmp(). For some reason, the toolchain that resides in / on OS X is flawed, and the <setjmp.h> header file is missing the declarations and data types.
To fix it, I had to download Xcode (damn!) and tell the compiler to look for the headers in the freshly installed MacOSX10.7.sdk (or 8) folder:
clang -Wall -o foo foo.c -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk
ok finally figured it out. For those who have seen messages like this be warned that the configure logs can be misleading. It turned out the binary built fine, however it was failing during runtime because a few mysql libraries could not be found. using the following command *export DYLD_LIBRARY_PATH=/usr/local/mysql/lib/* would fix the problem
Related
I am trying to compile a code with crayftn.
I get an error message
/opt/cray/pe/cce/10.0.1/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: failed to convert GOTPCREL relocation; relink with --no-relax
So it wants the flag --no-relax? OK, I can do that. So I re-link with that flag, and then it tells me
ftn -O3 --no-relax -dynamic -h pic -h omp -o stream_cray stream_mpi.o mysecond.o
ftn-2115 crayftn: ERROR in command line
"-no-relax" is an invalid command-line option.
So it asks for "--no-relax", but then it doesn't understand it. Anyone know of a way out of this conundrum? Or another way of solving the root problem in the first place?
I found this link:
https://bb.cgd.ucar.edu/cesm/threads/failed-to-convert-gotpcrel-relocation-relink-with-no-relax.4494/
PROBLEM:
Hi, I get the following error message for CLM5.0 compilation with
Intel compilers, during the final cesm bld ..ld: failed to convert GOTPCREL relocation; relink with --no-relax
SOLUTION:
Hi, Seems like found a solution to fix the compilation ...Adding of
"-Wl,--no-relax" in LDFLAGS does not solve this problem, but
"-mcmodel medium" in FFLAGS fixes this issue, after searching for
"Relocation truncated to fit" in google search engine, it comes up
with this link which was helpful to solve the issue
"https://software.intel.com/en-us/forums/intel-fortran-compiler-for-linux-and-mac-os-x/topic/268394"
Best Regards,Prabhakar
See also:
https://community.intel.com/t5/Intel-Fortran-Compiler/relocation-truncated-to-fit/td-p/1146616
This looks like mixing compilers and libraries from different systems
mixed up, either 32bit vs. 64bit or installations for ifort and
mpiifort based on different glibc or something similar.
I'm still curious about your "development environment":
Q: Have you been able to successfully compile, link and run ANY
program with your crayftn? Q: What version of crayftn? 10.0.1? Q: What
platform? Where is x86_64-pc-linux coming from? Just curious...
I'm not sure whether or not this question has a causality with my previous question.
So, I compiled Qt 5.3.1 from source with MinGW 4.8.2. The build stopped at qtbase/src/printsupport directory, as you can see the image below:
Is it a bug or something at qtbase/src/printsupport/kernel/qprintengine_win.cpp file? Then, should I just report it to the developer?
Look here it give you a hint. Probably somewhere you use this key -Werror in make files implicitly or explicitly when start compilation with gcc. If I correct understand error in that switch operation must be default: statement or case PPK_CustomBase: statement.
miraiE,
If you will notice in your output: cc1plus.exe: all warnings being treated as errors
This is, as was mentioned before, a warning that is stopping the compile process as an error.
You should be able to run you configure.bat script again, with the option -no-warnings-are-errors.
Then re-run your make.exe to get past this, and other warnings, from stopping the build.
Details of the specific configure options below:
../qtbase-opensource-src-5.3.1/configure --help |grep -i warn
-silent ............ Reduce the build output so that warnings and errors
-no-warnings-are-errors Make warnings be treated normally
-warnings-are-errors Make warnings be treated as errors
I hope this helps!
I am having trouble compiling Fortran code with references to DISLIN. I have downloaded DISLIN from the website, unzipped the file and ran the setup. I have added an environment variable called DISLIN (C:\dislin) and added C:\dislin\win to the PATH section of my system variables.
I am trying to compile some example code of the DISLIN website which includes line
USE DISLIN
I am using a MinGW shell to compile with command gfortran -o progrname -ldislin EX11_1.f90 and am getting the following error:
Fatal Error: Cant open module file 'dislin.mod' for reading at (1): No such file or directory.
I have tried changing the variable path and even moving the dislin.mod file (which is there) but still get the same message.
Ok I fixed this problem so thought I come back and post what worked for me incase any one else needs it...
Install both DISLIN and MinGW on the c drive
Copy disgf.a from /c/dislin and dislin.f90 from /c/dislin/gf into the directory containing your fortran files
(for me this is /c/MinGW/pnote)
Using the MinGW shell navigate to you files: cd /c/MinGW/pnote
compile dislin.f90 and your fortran program: gfortran -c dislin.f90 progName.f90 (dislin.f90 obviously only needs to be done once)
link libraries etc and compile: gfortran progName.o disgf.a -luser32 -lgdi32 -lopengl32 -o exeName
'run' exeName
You probably need to specify the path to the DISLIN module files:
gfortran EX11_1.f90 -o progrname -ldislin -I/path/to/DISLIN/modules
and, if not already configured like described here, also the path to the library itself:
gfortran EX11_1.f90 -o progrname -ldislin -I/path/to/DISLIN/modules \
-L/path/to/DISLIN/library
They provide a batch file (windows) to do the compiling and linking for you.
f90link -c My_Program
This is located in c:\dislin\Win
Also, if you are having trouble with the dislin.mod file which resides in c:\dislin\gf then recompile that with the -c compile option. I found all of this info in c:\dislin\readme.inf
near as I can tell (Jan 2018) dislin (64 bit) fails miserably with gfortran 7.2, period; and probably with many other newer compilers.
When trying to link, gfortran 7 says 'dislin.mod' is an unrecognizable format.
I think this program is highly dependent on exactly correct version synchronization - something that renders such software useless imho after many years in research.
and no, the correctness of various 'paths' seems not to help.
after all, gnuplot works, "at all". Not sure why I spent so much time on brand x.
jrc
I have just downloaded clang 3.3 (homebrew) from the LLVM web page to my mac (OS X 10.8.4), but get this compiler error when using std=c++11 stdlib=libc++:
In file included from /usr/include/c++/v1/string:434:
In file included from /usr/include/c++/v1/algorithm:594:
In file included from /usr/include/c++/v1/memory:590:
In file included from /usr/include/c++/v1/typeinfo:61:
/usr/include/c++/v1/exception:146:5: error: an attribute list cannot appear here
_LIBCPP_NORETURN friend void rethrow_exception(exception_ptr);
^~~~~~~~~~~~~~~~
/usr/include/c++/v1/__config:190:28: note: expanded from macro '_LIBCPP_NORETURN'
# define _LIBCPP_NORETURN [[noreturn]]
^~~~~~~~~~~~
It seems that I also need another libc++ (even though it was said that it was 100% complete on MAC ...), but I cannot find any. Any help appreciated. Just for your info:
> clang++ -v
clang version 3.3 (tags/RELEASE_33/final)
Target: x86_64-apple-darwin12.4.0
Thread model: posix
And, yes, I googled it and found this: http://comments.gmane.org/gmane.comp.compilers.llvm.bugs/24138 claiming it's resolved in libc++ trunk ???
Okay, as suggested by Howard, I've downloaded tip-of-the-trunk libc++ into /opt/local/share/libcxx, but have trouble building it. The manual says to cd libcxx/lib, export TRIPLE=-apple-, and run ./buildit. I presume this implies bash (I'm usually a tcsh user, so I moved my .tcshrc, got a new shell and started bash). I did that and the compilations worked, but the library build failed. Apparently ./buildit doesn't see $TRIPLE=-apple-, as it picks the wrong LDSHARED_FLAG (not that on line 81, but that on line 103, which is to be used if $TRIPLE is not set), even though echo $TRIPLE yields -apple- as it should. When I add the statement echo TRIPLE = $TRIPLE at the top of buildit, it reports nothing. How come? What is wrong here?
The failure was that because the wrong LDSHARED_FLAG was picked the loading didn't work (ld complaint about the unknown option -soname which, I think, makes sense under linux). I don't know why buildit (a #! /bin/sh file) didn't pick up the TRIPLE environment variable (it did pick up several unwanted ones such as CXX and CC). I now simply added TRIPLE=-apple- at the top of that file and it did built the library. However, the loader spitted out several warnings all of which were of the form
ld: warning: direct access in ___cxa_bad_typeid to global weak symbol typeinfo for std::bad_typeid means the weak symbol cannot be overridden at runtime. This was likely caused by different translation units being compiled with different visibility settings.
But most importantly, it works (the compilation at least, I have yet to test the library). I have one final question. The advice was to use -I and -L to tell the compiler about the whereabouts of this version. Is it not possible to put it into the usual place /usr/include/c++/v1/? Note that Xcode has its version somewhere else anyway and I had put in a symbolic link (/usr/include/c++/v1/) to that one to get my homebrew clang 3.2 working (after the some Xcode update). What about the library? Can I also put it in a standard place?
Here is the home page of libc++:
http://libcxx.llvm.org
You can download the tip-of-trunk libc++ from there. You can tell clang to point to your download with -nostdinc++ -I<path-to-libc++>/include. You can also tell clang to link to your tip-of-trunk libc++ with -L<path-to-libc++>/lib and export DYLD_LIBRARY_PATH=<path-to-libcxx>/lib. The directions are all on the libc++ home page.
Xcode is the easiest way to get clang + libc++. But if you want the very latest, this is the place to go.
Congratulations!
Don't worry about the ld warning. It is a harmless ld bug that will be fixed in a future release. I see it on 10.8.4 too and it doesn't hurt anything.
The libc++ headers no longer live at /usr/include/c++/v1. Xcode has migrated them into itself. Having libc++ headers at /usr/include/c++/v1 from older installs has been a source of confusion and bugs. I regularly use -nostdinc++ -I to point to the libc++ headers I want (I often have several versions going at the same time), and that works well for me.
It is possible for you to replace your /usr/lib/libc++.1.dylib with that you have built. I do not recommend doing this. I have to sometimes to do a proper test, but I always do so very carefully because sometimes this causes me to have to reboot onto a backup disk and restore my /usr/lib to its original state. If you do go this route, it is a very good idea to have a backup of the original /usr/lib/libc++.1.dylib very handy.
I recommend instead -L on the command line, and export DYLD_LIBRARY_PATH=<path-to-libcxx>/lib in the shell. More than one person (including myself) has gotten their computer into a really nasty place by not following this advice.
If you run testit (under test/), all you need is DYLD_LIBRARY_PATH in that shell. The testit script is set up to point to the right places without an install.
Also I recommend figuring out why you had to modify buildit. No one else is seeing that behavior. printenv on your command line may help in this endeavor.
libc++ is updated often. We try to keep tip-of-trunk always in a shippable state.
my c++ program has sql code in it, and it runs fine on one linux machine but on the other, I get the following error when I compile it
g++ test.cpp -o a -L/usr/lib/mysql -lmysqlclient -lboost_date_time
fatal error: /usr/include/mysql/mysql.h: No such file or directory
compilation terminated.
I have mysql installed but I am obviously missing some step somewhere (on this machine with a new ubuntu installation)
can someone please let me know the fix. thx!
Looks like your computer doesn't have MySQL installed (in which case, install it), or is installed to a location other than /usr/include/mysql/mysql.h (in which case, change your compile command to point at the correct location)
You need to pass the location of mysql include files.
You are passing library location with:
-L/usr/lib/mysql -lmysqlclient.
If you know where mysql headers are you need to pass them to compiler using:
-I/path/to/directory/with/mysql/headers