I've searched existing questions, but I can't seem to solve this.
I have a blur_mask.cc file with:
#include <iostream>
#include <ctime>
#include <opencv2/highgui/highgui.hpp>
#include <opencv2/gpu/gpu.hpp>
#include <vector_types.h>
#include <cuda.h>
#include <cuda_runtime.h>
extern "C" void gpuBlurMask(unsigned char* srcData, int srcStep, uchar3* dst, int dstStep, int width, int height, float *mask, int maskStep, int maskWidth, int maskHeight, int blockSize=16);
using namespace std;
using namespace cv;
using namespace cv::gpu;
void blurMask(Mat& src, Mat& dst, Mat& mask) {
GpuMat gpuSrc, gpuDst, gpuMask;
gpuSrc.upload(src);
gpuDst.upload(dst);
gpuMask.upload(mask);
gpuBlurMask(gpuSrc.data, gpuSrc.step, gpuDst.ptr<uchar3>(), gpuDst.step, gpuSrc.cols, gpuSrc.rows, gpuMask.ptr<float>(), gpuMask.step, gpuMask.cols, gpuMask.rows);
gpuDst.download(dst);
}
...
And a gpu_blur.cu file that contains
extern "C"
void gpuBlurMask(unsigned char* srcData, int srcStep, uchar3* dst, int dstStep, int width, int height, float *mask, int maskStep, int maskWidth, int maskHeight, int blockSize=16) {
...
When I do
nvcc -c -o gpu_blur gpu_blur.cu
I get no errors, but when compiling
g++ -o blur_mask blur_mask.cc gpu_blur -I /usr/local/cuda/include/ -lopencv_core -lopencv_highgui -lopencv_gpu
I get the following errors:
g++ -o blur_mask blur_mask.cc gpu_blur -I /usr/local/cuda/include/ -lopencv_core -lopencv_highgui -lopencv_gpu -lcuda
gpu_blur: In function `gpuBlurMask':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x59): undefined reference to `cudaMallocArray'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0xa0): undefined reference to `cudaMemcpy2DToArray'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x139): undefined reference to `cudaConfigureCall'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x16f): undefined reference to `cudaDeviceSynchronize'
gpu_blur: In function `__cudaUnregisterBinaryUtil()':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x184): undefined reference to `__cudaUnregisterFatBinary'
gpu_blur: In function `__device_stub__Z14blurMaskKernelP6uchar3iiiPfiii(uchar3*, int, int, int, float*, int, int, int)':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x1b9): undefined reference to `cudaSetupArgument'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x1dc): undefined reference to `cudaSetupArgument'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x1ff): undefined reference to `cudaSetupArgument'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x222): undefined reference to `cudaSetupArgument'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x245): undefined reference to `cudaSetupArgument'
gpu_blur:tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x264): more undefined references to `cudaSetupArgument' follow
gpu_blur: In function `__nv_cudaEntityRegisterCallback(void**)':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x381): undefined reference to `__cudaRegisterFunction'
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x3af): undefined reference to `__cudaRegisterTexture'
gpu_blur: In function `__sti____cudaRegisterAll_43_tmpxft_00000905_00000000_6_gpu_blur_cpp1_ii_srcTex()':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text+0x3c3): undefined reference to `__cudaRegisterFatBinary'
gpu_blur: In function `cudaChannelFormatDesc cudaCreateChannelDesc<unsigned char>()':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text._Z21cudaCreateChannelDescIhE21cudaChannelFormatDescv[cudaChannelFormatDesc cudaCreateChannelDesc<unsigned char>()]+0x34): undefined reference to `cudaCreateChannelDesc'
gpu_blur: In function `cudaError cudaBindTextureToArray<unsigned char, 2, (cudaTextureReadMode)0>(texture<unsigned char, 2, (cudaTextureReadMode)0> const&, cudaArray const*, cudaChannelFormatDesc const&)':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text._Z22cudaBindTextureToArrayIhLi2EL19cudaTextureReadMode0EE9cudaErrorRK7textureIT_XT0_EXT1_EEPK9cudaArrayRK21cudaChannelFormatDesc[cudaError cudaBindTextureToArray<unsigned char, 2, (cudaTextureReadMode)0>(texture<unsigned char, 2, (cudaTextureReadMode)0> const&, cudaArray const*, cudaChannelFormatDesc const&)]+0x27): undefined reference to `cudaBindTextureToArray'
gpu_blur: In function `cudaError cudaLaunch<char>(char*)':
tmpxft_00000905_00000000-3_gpu_blur.cudafe1.cpp:(.text._Z10cudaLaunchIcE9cudaErrorPT_[cudaError cudaLaunch<char>(char*)]+0x14): undefined reference to `cudaLaunch'
collect2: ld returned 1 exit status
Thank you.
You need to link to cudart library (-L/usr/local/cuda/lib64 -lcudart)
Related
I am trying to read a jpg file with boost::gil. I started with the following code snippets but I got stuck already.
#include <iostream>
#include <vector>
#include <string>
#include <boost/gil/gil_all.hpp>
#include <boost/gil/extension/io/jpeg_dynamic_io.hpp>
void ReadAnImage( std::string fname ){
std::vector<std::vector<float> > points;
boost::gil::rgb8_image_t img;
boost::gil::jpeg_read_image( fname , img );
}
int main( void ){
ReadAnImage( "pic.jpg" );
}
When I try to compile this code with
g++ -I ~/programs/cpp/boost/include/ -std=c++11 main.cpp -o main
I get the following error
MainNew.cpp:(.text._ZN5boost3gil6detail11jpeg_reader4initEv[_ZN5boost3gil6detail11jpeg_reader4initEv]+0x1a): undefined reference to jpeg_std_error' MainNew.cpp:(.text._ZN5boost3gil6detail11jpeg_reader4initEv[_ZN5boost3gil6detail11jpeg_reader4initEv]+0x3f): undefined reference to jpeg_CreateDecompress'
MainNew.cpp:(.text._ZN5boost3gil6detail11jpeg_reader4initEv[_ZN5boost3gil6detail11jpeg_reader4initEv]+0x61): undefined reference to jpeg_stdio_src' MainNew.cpp:(.text._ZN5boost3gil6detail11jpeg_reader4initEv[_ZN5boost3gil6detail11jpeg_reader4initEv]+0x76): undefined reference to jpeg_read_header'
/tmp/ccrGnMRc.o: In function boost::gil::detail::jpeg_reader::~jpeg_reader()': MainNew.cpp:(.text._ZN5boost3gil6detail11jpeg_readerD2Ev[_ZN5boost3gil6detail11jpeg_readerD5Ev]+0x18): undefined reference to jpeg_destroy_decompress'
/tmp/ccrGnMRc.o: In function void boost::gil::detail::jpeg_reader::apply<boost::gil::image_view<boost::gil::memory_based_2d_locator<boost::gil::memory_based_step_iterator<boost::gil::pixel<unsigned char, boost::gil::layout<boost::mpl::ve ctor3<boost::gil::red_t, boost::gil::green_t, boost::gil::blue_t>, boost::mpl::range_c<int, 0, 3> > >*> > > >(boost::gil::image_view<boost::gil::memory_based_2d_locator<boost::gil::memory_based_step_iterator<boost::gil::pixel<unsigned cha r, boost::gil::layout<boost::mpl::vector3<boost::gil::red_t, boost::gil::green_t, boost::gil::blue_t>, boost::mpl::range_c<int, 0, 3> > >*> > > const&)': MainNew.cpp:(.text._ZN5boost3gil6detail11jpeg_reader5applyINS0_10image_viewINS0_23memory_based_2d_locatorINS0_26memory_based_step_iteratorIPNS0_5pixelIhNS0_6layoutINS_3mpl7vector3INS0_5red_tENS0_7green_tENS0_6blue_tEEENS9_7range_cIiLi0ELi 3EEEEEEEEEEEEEEEvRKT_[_ZN5boost3gil6detail11jpeg_reader5applyINS0_10image_viewINS0_23memory_based_2d_locatorINS0_26memory_based_step_iteratorIPNS0_5pixelIhNS0_6layoutINS_3mpl7vector3INS0_5red_tENS0_7green_tENS0_6blue_tEEENS9_7range_cIiLi0 ELi3EEEEEEEEEEEEEEEvRKT_]+0x2e): undefined reference to jpeg_start_decompress'
MainNew.cpp:(.text.ZN5boost3gil6detail11jpeg_reader5applyINS0_10image_viewINS0_23memory_based_2d_locatorINS0_26memory_based_step_iteratorIPNS0_5pixelIhNS0_6layoutINS_3mpl7vector3INS0_5red_tENS0_7green_tENS0_6blue_tEEENS9_7range_cIiLi0ELi
3EEEEEEEEEEEEEEEvRKT[ZN5boost3gil6detail11jpeg_reader5applyINS0_10image_viewINS0_23memory_based_2d_locatorINS0_26memory_based_step_iteratorIPNS0_5pixelIhNS0_6layoutINS_3mpl7vector3INS0_5red_tENS0_7green_tENS0_6blue_tEEENS9_7range_cIiLi0
ELi3EEEEEEEEEEEEEEEvRKT]+0x13e): undefined reference to jpeg_read_scanlines' MainNew.cpp:(.text._ZN5boost3gil6detail11jpeg_reader5applyINS0_10image_viewINS0_23memory_based_2d_locatorINS0_26memory_based_step_iteratorIPNS0_5pixelIhNS0_6layoutINS_3mpl7vector3INS0_5red_tENS0_7green_tENS0_6blue_tEEENS9_7range_cIiLi0ELi 3EEEEEEEEEEEEEEEvRKT_[_ZN5boost3gil6detail11jpeg_reader5applyINS0_10image_viewINS0_23memory_based_2d_locatorINS0_26memory_based_step_iteratorIPNS0_5pixelIhNS0_6layoutINS_3mpl7vector3INS0_5red_tENS0_7green_tENS0_6blue_tEEENS9_7range_cIiLi0 ELi3EEEEEEEEEEEEEEEvRKT_]+0x1ad): undefined reference to jpeg_finish_decompress'
collect2: error: ld returned 1 exit status
I am not quite sure what I am doing wrong. Because according to the documentation
https://www.boost.org/doc/libs/1_74_0/libs/gil/doc/html/index.html
the jpeg_read_image should be included in boost::gil. Am I maybe missing another header file??
Any hints are much appreciated.
I am pretty new to c and c++, so please try explain more specific what I should do. The program tries to read files from a directory using multithreads, and store the information in a map so that it can be used later.
I have been looking for similar posts. However, I am not able to figure out.
In https://github.com/kaldi-asr/kaldi/issues/938, it said that "If you get linker errors about undefined references to symbols that involve types in the std::__cxx11 namespace or the tag [abi:cxx11] then it probably indicates that you are trying to link together object files that were compiled with different values for the _GLIBCXX_USE_CXX11_ABI macro."
The solution for undefined reference to `pthread_cancel' (add "-pthread" flag does not work either.
My code is
#include <iostream>
#include <iomanip>
#include <fstream>
#include <vector>
#include <map>
#include <algorithm>
#include <random>
#include <unistd.h>
#include <cmath>
#include <stdlib.h>
#include <mutex>
#include <sys/wait.h>
#include <filesystem>
#include <string>
#include <pthread.h>
#define time_str(s) (s < 60 ? (to_string(s) + " second(s)") : (s < 3600 ? (to_string((s) / 60) + " minute(s)") : (to_string((s) / 3600) + " hour(s) and " + to_string(((s) % 3600) / 60) + " minute(s)")))
using namespace std;
namespace fs = std::filesystem;
struct MyGenom
{
vector<string> filepaths;
map<string, string> seq;
};
void check_rv(int rv) {
if (rv != 0) {
printf("Error: Value is %d\n", rv);
exit(1);
}
}
struct Reference_Genome {
static long unsigned int idx;
static map <string, string> seq;
static pthread_mutex_t mtxLock;
static vector <string> filepaths;
static void writing(string path) {
}
static void *distribution(void *var) {
}
Reference_Genome(string dir, unsigned int n_threads) {
}
};
int main(int argc, char const *argv[]) {
string dir = "./data/ex_seq";
unsigned int n_threads = 5;
Reference_Genome ref(dir, n_threads);
cout << "chr6: " << ref.seq["chr6"] << endl;
cout << "chr9: " << ref.seq["chr9"] << endl;
cout << "chr13: " << ref.seq["chr13"] << endl;
}
The gcc version is "Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-10ubuntu2)".
The error is
testSeq.cpp:97: undefined reference to `Reference_Genome::seq[abi:cxx11]'
/usr/bin/ld: testSeq.cpp:98: undefined reference to `Reference_Genome::seq[abi:cxx11]'
/usr/bin/ld: testSeq.cpp:99: undefined reference to `Reference_Genome::seq[abi:cxx11]'
/usr/bin/ld: /tmp/cctfwVX2.o: in function `Reference_Genome::writing(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)':
/testSeq.cpp:46: undefined reference to `Reference_Genome::seq[abi:cxx11]'
/usr/bin/ld: testSeq.cpp:48: undefined reference to `Reference_Genome::seq[abi:cxx11]'
/usr/bin/ld: /tmp/cctfwVX2.o: in function `Reference_Genome::distribution(void*)':
testSeq.cpp:55: undefined reference to `Reference_Genome::filepaths[abi:cxx11]'
/usr/bin/ld: testSeq.cpp:55: undefined reference to `Reference_Genome::idx'
/usr/bin/ld: testSeq.cpp:56: undefined reference to `Reference_Genome::mtxLock'
/usr/bin/ld: testSeq.cpp:57: undefined reference to `Reference_Genome::idx'
/usr/bin/ld: testSeq.cpp:57: undefined reference to `Reference_Genome::filepaths[abi:cxx11]'
/usr/bin/ld: testSeq.cpp:58: undefined reference to `Reference_Genome::idx'
/usr/bin/ld: testSeq.cpp:58: undefined reference to `Reference_Genome::idx'
/usr/bin/ld: testSeq.cpp:59: undefined reference to `Reference_Genome::mtxLock'
/usr/bin/ld: /tmp/cctfwVX2.o: in function `Reference_Genome::Reference_Genome(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, unsigned int)':
testSeq.cpp:68: undefined reference to `Reference_Genome::filepaths[abi:cxx11]'
/usr/bin/ld: testSeq.cpp:70: undefined reference to `Reference_Genome::idx'
/usr/bin/ld: testSeq.cpp:72: undefined reference to `Reference_Genome::mtxLock'
/usr/bin/ld: testSeq.cpp:85: undefined reference to `Reference_Genome::mtxLock'
/usr/bin/ld: testSeq.cpp:88: undefined reference to `Reference_Genome::filepaths[abi:cxx11]'
collect2: error: ld returned 1 exit status
When you declare static variables inside a class, you must also declare it exactly once outside of the class. In this case, you could put this in the bottom of your C++ file or in between the main() function and the class Reference_Genome definition:
long unsigned int Reference_Genome::idx;
map <string, string> Reference_Genome::seq;
pthread_mutex_t Reference_Genome::mtxLock;
vector <string> Reference_Genome::filepaths;
The idea is that you can put the class definition inside a header file, to be included in multiple different compilation units, but the static variables are only defined once, in one .cpp file of your choosing.
I have a function in C++ that uses data types like vector and map from STL. Here is some sample code:
mylib.cpp
#include "mylib.h"
#include<vector>
using namespace std;
int summation(int n) {
vector<int> numbers;
int sum = 0;
for(int i = 1; i <=n; i++)
numbers.push_back(i);
for(int j = 0; j < numbers.size(); j++)
sum += numbers[j];
return sum;
}
I created a header file as follows:
mylib.h
#ifdef _cplusplus
extern "C" {
#endif
extern int summation(int n);
#ifdef _cplusplus
};
#endif
The C++ file was compiled into the obejct code using the command
g++ -o mylib.o -c mylib.cpp
Then, I wrote a C program in order to use the function summation from it.
main.c
#include<stdio.h>
#include "mylib.h"
int main() {
int n;
scanf("%d", &n);
printf("%d", summation(n));
return 0;
}
Now, when I compile the C file above using gcc,
gcc main.c mylib.o
I get the following error
/tmp/ccAMN2ld.o: In function `main':
main.c:(.text+0x33): undefined reference to `summation'
mylib.o: In function `std::vector<int, std::allocator<int> >::_M_insert_aux(__gnu_cxx::__normal_iterator<int*, std::vector<int, std::allocator<int> > >, int const&)':
mylib.cpp:(.text._ZNSt6vectorIiSaIiEE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPiS1_EERKi[_ZNSt6vectorIiSaIiEE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPiS1_EERKi]+0x26e): undefined reference to `__cxa_begin_catch'
mylib.cpp:(.text._ZNSt6vectorIiSaIiEE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPiS1_EERKi[_ZNSt6vectorIiSaIiEE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPiS1_EERKi]+0x2d7): undefined reference to `__cxa_rethrow'
mylib.cpp:(.text._ZNSt6vectorIiSaIiEE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPiS1_EERKi[_ZNSt6vectorIiSaIiEE13_M_insert_auxEN9__gnu_cxx17__normal_iteratorIPiS1_EERKi]+0x2df): undefined reference to `__cxa_end_catch'
mylib.o: In function `std::vector<int, std::allocator<int> >::_M_check_len(unsigned long, char const*) const':
mylib.cpp:(.text._ZNKSt6vectorIiSaIiEE12_M_check_lenEmPKc[_ZNKSt6vectorIiSaIiEE12_M_check_lenEmPKc]+0x5b): undefined reference to `std::__throw_length_error(char const*)'
mylib.o: In function `__gnu_cxx::new_allocator<int>::deallocate(int*, unsigned long)':
mylib.cpp:(.text._ZN9__gnu_cxx13new_allocatorIiE10deallocateEPim[_ZN9__gnu_cxx13new_allocatorIiE10deallocateEPim]+0x1c): undefined reference to `operator delete(void*)'
mylib.o: In function `__gnu_cxx::new_allocator<int>::allocate(unsigned long, void const*)':
mylib.cpp:(.text._ZN9__gnu_cxx13new_allocatorIiE8allocateEmPKv[_ZN9__gnu_cxx13new_allocatorIiE8allocateEmPKv]+0x2c): undefined reference to `std::__throw_bad_alloc()'
mylib.cpp:(.text._ZN9__gnu_cxx13new_allocatorIiE8allocateEmPKv[_ZN9__gnu_cxx13new_allocatorIiE8allocateEmPKv]+0x3c): undefined reference to `operator new(unsigned long)'
mylib.o:(.eh_frame+0x4b): undefined reference to `__gxx_personality_v0'
collect2: error: ld returned 1 exit status
It is imperative that I use gcc to compile the C file. Is there a way to make it work?
I tried looking for solution and stumbled upon the links below,
How to call C++ function from C?
Elegantly call C++ from C
http://www.cplusplus.com/forum/general/8997/
but couldn't find a solution to my problem.
Compile the C file by itself with the C compiler:
gcc -c cfile.c
then link all the files with the C++ compiler:
g++ -o a.out main.o cfile.o mylib.o
Note that you must compile the file with the main function with the C++ compiler. Any other files can be compiled with either, though you need extern "C" declarations to be able to call C code from C++ or create C++ functions that can be called from C
I have build all the file in g++, am not getting linking error. can you build all the source file to gcc or g++.
Recently I learned the beautiful language D, which is so more plastic and helps yourself writing stable fast programs. But its not popular... because few code written on D and so more on C and C++. Therefore after I read the book of Andrei Alexanderscu where author very superficially described question about linking of D library to C++ code, I tried learn it myself and written some code on D where defined function that returns an instance of CompleteAutomata class which implements AutomataInterface defined also in C++ code:
#ifndef AUTOMATAINTERFACE_H
#define AUTOMATAINTERFACE_H
class AutomataInterface {
public:
virtual ~AutomataInterface() {}
virtual void next() = 0;
virtual void save() = 0;
virtual void restore() = 0;
virtual void zerofile() = 0;
virtual void invert(unsigned long x, unsigned long y) = 0;
virtual int state(unsigned long x, unsigned long y) const = 0;
virtual unsigned long x() const = 0;
virtual unsigned long y() const = 0;
};
AutomataInterface *createAutomata(unsigned long x, unsigned long y);
#endif // AUTOMATAINTERFACE_H
Relevant D code:
import agregator; // this is my own lib
extern(C++) {
interface AutomataInterface {
void next();
void save();
void restore();
void zerofile();
void invert(size_t x, size_t y);
int state(size_t x, size_t y) const;
size_t x() const;
size_t y() const;
}
AutomataInterface createAutomata(ulong x, ulong y) {
return new CompleteAutomata(x, y);
}
}
export class CompleteAutomata : AutomataInterface {
// instance variables...
this(size_t x, size_t y) { /* ... */ }
extern(C++) {
override void next() {
// ...
}
// others overridden interface methods...
}
}
After code had written, I've compiling of D library by two different compilers (dmd and gdc), with following flags:
dmd -release -O -lib -odlib -ofliblife.h *.d
or
gdc -frelease -O2 -Wall -c *.d
ar cq lib/liblife.a *.o
When I trying link each of received libs to Qt project by adding path to library dir (-L option) and adding a lib directly (-l option). I got errors of in both cases.
In first dmd case I have "undefined reference to `_d_newclass'" and couple of another errors:
g++ -Wl,-O1 -Wl,-z,relro -o automata main.o mainwindow.o renderarea.o button.o playbutton.o moc_mainwindow.o moc_renderarea.o moc_button.o moc_playbutton.o -L/home/newmen/projects/d/life/lib -llife -lQtGui -lQtCore -lpthread
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1fe_5b0.o): In function `createAutomata(unsigned int, unsigned int)':
complete_automata.d:(.text._Z14createAutomatajj+0x27): undefined reference to `_d_newclass'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.data+0x0): undefined reference to `_D14TypeInfo_Class6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.data+0x50): undefined reference to `_D6Object7__ClassZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.data+0xd0): undefined reference to `_D14TypeInfo_Class6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.data+0x120): undefined reference to `_D6Object7__ClassZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x68): undefined reference to `_D6object6Object8toStringMFZAya'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x70): undefined reference to `_D6object6Object6toHashMFNbNeZm'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x78): undefined reference to `_D6object6Object5opCmpMFC6ObjectZi'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x80): undefined reference to `_D6object6Object8opEqualsMFC6ObjectZb'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0xf8): undefined reference to `_D6object6Object8toStringMFZAya'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x100): undefined reference to `_D6object6Object6toHashMFNbNeZm'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x108): undefined reference to `_D6object6Object5opCmpMFC6ObjectZi'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x110): undefined reference to `_D6object6Object8opEqualsMFC6ObjectZb'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o): In function `_D17complete_automata16CompleteAutomata6__ctorMFmmZC17complete_automata16CompleteAutomata':
complete_automata.d:(.text._D17complete_automata16CompleteAutomata6__ctorMFmmZC17complete_automata16CompleteAutomata+0x1f): undefined reference to `_d_newclass'
complete_automata.d:(.text._D17complete_automata16CompleteAutomata6__ctorMFmmZC17complete_automata16CompleteAutomata+0x46): undefined reference to `_d_newclass'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o): In function `CompleteAutomata::next()':
complete_automata.d:(.text._ZN16CompleteAutomata4nextEv+0x2f): undefined reference to `_d_newclass'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o): In function `CompleteAutomata::save()':
complete_automata.d:(.text._ZN16CompleteAutomata4saveEv+0x25): undefined reference to `_adDupT'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o): In function `CompleteAutomata::restore()':
complete_automata.d:(.text._ZN16CompleteAutomata7restoreEv+0x33): undefined reference to `_d_newclass'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o): In function `CompleteAutomata::zerofile()':
complete_automata.d:(.text._ZN16CompleteAutomata8zerofileEv+0x2f): undefined reference to `_d_newclass'
/home/newmen/projects/d/life/lib/liblife.a(object_201_8b7.o): In function `no symbol':
/usr/include/dmd/druntime/import/object.di:(.text+0x6): undefined reference to `_Dmodule_ref'
/home/newmen/projects/d/life/lib/liblife.a(object_201_8b7.o):(.data._D12TypeInfo_Axi6__initZ+0x0): undefined reference to `_D14TypeInfo_Array6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(object_201_8b7.o): In function `_D46/usr/include/dmd/druntime/import/object.di.5137__arrayZ':
/usr/include/dmd/druntime/import/object.di:(.text._D46/usr/include/dmd/druntime/import/object.di.5137__arrayZ+0x16): undefined reference to `_d_array_bounds'
/home/newmen/projects/d/life/lib/liblife.a(object_201_8b7.o): In function `_D46/usr/include/dmd/druntime/import/object.di.5138__assertFiZv':
/usr/include/dmd/druntime/import/object.di:(.text._D46/usr/include/dmd/druntime/import/object.di.5138__assertFiZv+0x16): undefined reference to `_d_assertm'
/home/newmen/projects/d/life/lib/liblife.a(object_201_8b7.o): In function `_D46/usr/include/dmd/druntime/import/object.di.51315__unittest_failFiZv':
/usr/include/dmd/druntime/import/object.di:(.text._D46/usr/include/dmd/druntime/import/object.di.51315__unittest_failFiZv+0x16): undefined reference to `_d_unittestm'
/home/newmen/projects/d/life/lib/liblife.a(object_203_875.o): In function `no symbol':
/usr/include/dmd/druntime/import/object.di:(.text+0x6): undefined reference to `_Dmodule_ref'
/home/newmen/projects/d/life/lib/liblife.a(object_203_875.o):(.data._D11TypeInfo_xi6__initZ+0x0): undefined reference to `_D14TypeInfo_Const6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(object_203_875.o):(.data._D11TypeInfo_xi6__initZ+0x10): undefined reference to `_D10TypeInfo_i6__initZ'
/home/newmen/projects/d/life/lib/liblife.a(object_203_875.o): In function `_D46/usr/include/dmd/druntime/import/object.di.5157__arrayZ':
/usr/include/dmd/druntime/import/object.di:(.text._D46/usr/include/dmd/druntime/import/object.di.5157__arrayZ+0x16): undefined reference to `_d_array_bounds'
/home/newmen/projects/d/life/lib/liblife.a(object_203_875.o): In function `_D46/usr/include/dmd/druntime/import/object.di.5158__assertFiZv':
/usr/include/dmd/druntime/import/object.di:(.text._D46/usr/include/dmd/druntime/import/object.di.5158__assertFiZv+0x16): undefined reference to `_d_assertm'
/home/newmen/projects/d/life/lib/liblife.a(object_203_875.o): In function `_D46/usr/include/dmd/druntime/import/object.di.51515__unittest_failFiZv':
/usr/include/dmd/druntime/import/object.di:(.text._D46/usr/include/dmd/druntime/import/object.di.51515__unittest_failFiZv+0x16): undefined reference to `_d_unittestm'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o): In function `no symbol':
agregator.d:(.text+0x6): undefined reference to `_Dmodule_ref'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o):(.data+0x10): undefined reference to `_D3std6random12__ModuleInfoZ'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o):(.rodata+0x20): undefined reference to `_D14TypeInfo_Class6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o): In function `_D9agregator7__arrayZ':
agregator.d:(.text._D9agregator7__arrayZ+0x16): undefined reference to `_d_array_bounds'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o): In function `_D9agregator8__assertFiZv':
agregator.d:(.text._D9agregator8__assertFiZv+0x16): undefined reference to `_d_assertm'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o): In function `_D9agregator15__unittest_failFiZv':
agregator.d:(.text._D9agregator15__unittest_failFiZv+0x16): undefined reference to `_d_unittestm'
/home/newmen/projects/d/life/lib/liblife.a(agregator_2_5fd.o):(.data+0x0): undefined reference to `_D14TypeInfo_Class6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(agregator_2_5fd.o):(.data+0x50): undefined reference to `_D6Object7__ClassZ'
/home/newmen/projects/d/life/lib/liblife.a(agregator_2_5fd.o):(.rodata+0x48): undefined reference to `_D6object6Object8toStringMFZAya'
...
In second case (when using gdc) I receives message about "multiple definition of":
g++ -Wl,-O1 -Wl,-z,relro -o cellular_life main.o mainwindow.o renderarea.o button.o playbutton.o moc_mainwindow.o moc_renderarea.o moc_button.o moc_playbutton.o -L/home/newmen/projects/d/life/lib -llife -lQtGui -lQtCore -lpthread
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `_D17complete_automata16CompleteAutomata7restoreMRZv14SliceAgregator9initValueMxFmmZi':
complete_automata.d:(.text+0x0): multiple definition of `_D17complete_automata16CompleteAutomata7restoreMRZv14SliceAgregator9initValueMxFmmZi'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._D17complete_automata16CompleteAutomata7restoreMRZv14SliceAgregator9initValueMxFmmZi+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::invert(unsigned long long, unsigned long long)':
complete_automata.d:(.text+0x40): multiple definition of `CompleteAutomata::invert(unsigned long long, unsigned long long)'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZN16CompleteAutomata6invertEyy+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::state(unsigned long long, unsigned long long) const':
complete_automata.d:(.text+0x60): multiple definition of `CompleteAutomata::state(unsigned long long, unsigned long long) const'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZNK16CompleteAutomata5stateEyy+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::x() const':
complete_automata.d:(.text+0x80): multiple definition of `CompleteAutomata::x() const'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZNK16CompleteAutomata1xEv+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::y() const':
complete_automata.d:(.text+0xa0): multiple definition of `CompleteAutomata::y() const'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZNK16CompleteAutomata1yEv+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::next()':
complete_automata.d:(.text+0x140): multiple definition of `CompleteAutomata::next()'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZN16CompleteAutomata4nextEv+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.tbss+0x10): multiple definition of `_D17complete_automata16CompleteAutomata4nextMRZv7changerC7changer7Changer'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.tbss+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::restore()':
complete_automata.d:(.text+0x1b0): multiple definition of `CompleteAutomata::restore()'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZN16CompleteAutomata7restoreEv+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.tbss+0x8): multiple definition of `_D17complete_automata16CompleteAutomata7restoreMRZv9agregatorC9agregator9Agregator'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.tbss+0x8): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.data+0x180): multiple definition of `_D_ZN16CompleteAutomata7restoreEv14SliceAgregator7__ClassZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.data+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::zerofile()':
complete_automata.d:(.text+0x220): multiple definition of `CompleteAutomata::zerofile()'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZN16CompleteAutomata8zerofileEv+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.tbss+0x0): multiple definition of `_D17complete_automata16CompleteAutomata8zerofileMRZv9agregatorC9agregator9Agregator'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.tbss+0x10): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::save()':
complete_automata.d:(.text+0x290): multiple definition of `CompleteAutomata::save()'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._ZN16CompleteAutomata4saveEv+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.data+0x80): multiple definition of `_D17complete_automata16CompleteAutomata7__ClassZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.data+0xd0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `_D17complete_automata16CompleteAutomata6__ctorMFmmZC17complete_automata16CompleteAutomata':
complete_automata.d:(.text+0x9b0): multiple definition of `_D17complete_automata16CompleteAutomata6__ctorMFmmZC17complete_automata16CompleteAutomata'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):complete_automata.d:(.text._D17complete_automata16CompleteAutomata6__ctorMFmmZC17complete_automata16CompleteAutomata+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.rodata+0x420): multiple definition of `_D17complete_automata16CompleteAutomata6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0xf0): first defined here
/usr/bin/ld: Warning: size of symbol `_D17complete_automata16CompleteAutomata6__vtblZ' changed from 104 in /home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o) to 112 in /home/newmen/projects/d/life/lib/liblife.a(complete_automata.o)
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.rodata+0x4a0): multiple definition of `_D17complete_automata16CompleteAutomata6__initZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x90): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.rodata+0x4e0): multiple definition of `_D_ZN16CompleteAutomata7restoreEv14SliceAgregator6__vtblZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x60): first defined here
/usr/bin/ld: Warning: size of symbol `_D_ZN16CompleteAutomata7restoreEv14SliceAgregator6__vtblZ' changed from 48 in /home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o) to 56 in /home/newmen/projects/d/life/lib/liblife.a(complete_automata.o)
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o):(.rodata+0x520): multiple definition of `_D_ZN16CompleteAutomata7restoreEv14SliceAgregator6__initZ'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1ff_675.o):(.rodata+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(agregator.o): In function `_D3std7complex14__T7ComplexTeZ7Complex8toStringMxFMDFAxaZvAyaZAya12__lambda1223MFNbNfAxaZv':
agregator.d:(.text+0xaf): undefined reference to `_D11TypeInfo_Aa6__initZ'
agregator.d:(.text+0xb7): undefined reference to `_d_arrayappendT'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o): In function `_D3std4conv16__T6toImplTiTxkZ6toImplFNaNfxkZi15__dgliteral1389MFNaNfZC6object9Throwable':
agregator.d:(.text+0xc5): undefined reference to `_D3std4conv21ConvOverflowException7__ClassZ'
agregator.d:(.text+0xca): undefined reference to `_d_newclass'
agregator.d:(.text+0xed): undefined reference to `_D3std4conv21ConvOverflowException6__ctorMFAyaAyamZC3std4conv21ConvOverflowException'
/home/newmen/projects/d/life/lib/liblife.a(agregator.o): In function `_D3std6format17__T9getNthIntTxeZ9getNthIntFNaNfkxeZi.part.6':
agregator.d:(.text+0x105): undefined reference to `_D3std6format15FormatException7__ClassZ'
agregator.d:(.text+0x10a): undefined reference to `_d_newclass'
...
After two days of attempts to do so...
Recently I've try add Phobos (D standard library) to linking process. For dmd -lphobos2 flag and for gdc -lgphobos2 flag correspond. But it not help me...
When using dmd linker output:
g++ -Wl,-O1 -Wl,-z,relro -o cellular_life main.o mainwindow.o renderarea.o button.o playbutton.o moc_mainwindow.o moc_renderarea.o moc_button.o moc_playbutton.o -L/home/newmen/projects/d/life/lib -llife -lQtGui -lQtCore -lpthread -lphobos2
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_easy_duphandle#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_easy_strerror#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_slist_free_all#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_global_init#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_easy_perform#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_easy_init#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_easy_pause#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `_Dmain'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_easy_setopt#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_slist_append#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_global_cleanup#CURL_GNUTLS_3'
/usr/lib/gcc/x86_64-redhat-linux/4.7.2/../../../../lib64/libphobos2.so: undefined reference to `curl_easy_cleanup#CURL_GNUTLS_3'
collect2: error: ld returned 1 exit status
make: *** [cellular_life] Error 1
and I've try substitute of libcurl-gnutls: ln -s /usr/lib64/libcurl.so.4 /usr/lib64/libcurl-gnutls.so.4. Then result of linking the same but without message about libcurl-gnutls.
When using gdc linker output again talk about "multiple definition to":
/home/newmen/gcc/bin/g++ -Wl,-O1 -Wl,-z,relro -o cellular_life main.o mainwindow.o renderarea.o button.o playbutton.o moc_mainwindow.o moc_renderarea.o moc_button.o moc_playbutton.o -L/home/newmen/gcc/lib64 -L/home/newmen/projects/d/life/lib -llife -lQtGui -lQtCore -lpthread -lgphobos2
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `_D17complete_automata16CompleteAutomata7restoreMRZv14SliceAgregator9initValueMxFmmZi':
complete_automata.d:(.text+0x0): multiple definition of `_D17complete_automata16CompleteAutomata7restoreMRZv14SliceAgregator9initValueMxFmmZi'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1e3_675.o):complete_automata.d:(.text._D17complete_automata16CompleteAutomata7restoreMRZv14SliceAgregator9initValueMxFmmZi+0x0): first defined here
/home/newmen/projects/d/life/lib/liblife.a(complete_automata.o): In function `CompleteAutomata::invert(unsigned long long, unsigned long long)':
complete_automata.d:(.text+0x40): multiple definition of `CompleteAutomata::invert(unsigned long long, unsigned long long)'
/home/newmen/projects/d/life/lib/liblife.a(complete_automata_1e3_675.o):complete_automata.d:(.text._ZN16CompleteAutomata6invertEyy+0x0): first defined here
...
/home/newmen/gcc/lib64/libgphobos2.a(dmain2.o): In function `main':
/home/newmen/projects/distrib/gcc-4.8.1/x86_64-unknown-linux-gnu/libphobos/libdruntime/../../.././libphobos/libdruntime/rt/dmain2.d:394: multiple definition of `main'
main.o:/home/newmen/projects/d/life/qt_viewer/main.cpp:5: first defined here
/usr/bin/ld: /home/newmen/gcc/lib64/libgphobos2.a(time.o): undefined reference to symbol 'clock_getres##GLIBC_2.2.5'
/usr/bin/ld: note: 'clock_getres##GLIBC_2.2.5' is defined in DSO /lib64/librt.so.1 so try adding it to the linker command line
/lib64/librt.so.1: could not read symbols: Invalid operation
collect2: error: ld returned 1 exit status
make: *** [cellular_life] Error 1
with message about librt.so.1 at end. I inspect /usr/lib64 and seen there it library file.
Dear magic, please tell me how to connect the D library to C++ code.
It is generally easier to let the D compiler do the linking:
g++ -c yourfile.cpp
dmd yourfile.o d_file.d
You might have to add curl to it as well, same as you did before. To pass a linker argument through dmd (or gdmd if you're using gdc, should work the same way), pass -Larg
dmd yourfile.o d_file.d -L-lstdc++ -L-lcurl -L-lQtGui # and so on
It is generally easier to put main() in D too (it can just immediately call out to a C++ defined function too) because otherwise you'll probably have to initialize the D runtime before using it from C++.
But to finish the process you've started... first thing, looks like your liblife.a has the same file added twice. I'd try deleting that file and recreating it, or just skipping that step and passing the .o files to the linker directly without first packing them into a .a. That'll simplify things a bit.
My other question is: why is it trying to pull the D main? Is there a main() in your .d code somewhere? If so, that's ok, but you'll have to remove the one from your C++ code. (Perhaps rename it into cppmain and then call it from the D main:
D code:
extern(C++) int cppmain(int argc, char** argv);
int main() {
import core.runtime;
return cppmain(Runtime.cArgs.argc, Runtime.cArgs.argv);
}
And that will forward to your C++ main. If you want to remove the D main (assuming it is there, if not let me know and I'll try to think what else could cause that linker error), before tou use D code in C++, you'll want to initialize D. So:
D code:
extern(C++) void initD() {
import core.runtime;
Runtime.initialize();
}
C++ code:
extern "C++" void initD();
int main() {
initD();
// the rest of your stuff
}
If you don't do that, calling D functions is liable to cause a segfault.
But to sum up, I'm pretty sure you have a duplicate .o file added to your archive, and main defined in both D and C++. Delete the duplicate in the archive and kill one of the duplicate mains and you should have some success.
I am trying to call R functions from C++ on Windows. I am using MinGW for compiling the program, but it throws error while compiling. Code (taken from Dirk) and compilation error are as follows:
#include <iostream>
using namespace std;
#include "RInside.h" // for the embedded R via RInside
Rcpp::NumericMatrix createMatrix(const int n) {
Rcpp::NumericMatrix M(n,n);
for (int i=0; i<n; i++) {
for (int j=0; j<n; j++) {
M(i,j) = i*10+j;
}
}
return(M);
}
int main(int argc, char *argv[]) {
const int mdim = 4; // let the matrices be 4 by 4
SEXP ans;
RInside R(argc, argv); // create an embedded R instance
Rcpp::NumericMatrix M = createMatrix(mdim); // create and fill a sample data Matrix
R["M"] = M; // assign C++ matrix M to R's 'M' var
std::string evalstr = "\
cat('Running ls()\n'); print(ls()); \
cat('Showing M\n'); print(M); \
cat('Showing colSums()\n'); Z <- colSums(M); print(Z); \
Z"; // returns Z
ans = R.parseEval(evalstr); // eval the init string -- Z is now in ans
Rcpp::NumericVector v(ans); // convert SEXP ans to a vector of doubles
for (int i=0; i< v.size(); i++) { // show the result
std::cout << "In C++ element " << i << " is " << v[i] << std::endl;
}
return 0;
}
Compile:
g++ -I "C:\ProgramFiles\R\R-2.14.0\library\RInside\include" -I "C:\Progra
mFiles\R\R-2.14.0\library\Rcpp\include" -I "C:\ProgramFiles\R\R-2.14.0\include"
RFunctions.cpp -o sh1.exe
Error:
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text+0x19a): und
efined reference to `RInside::RInside(int, char const* const*, bool)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text+0x1ee): und
efined reference to `RInside::operator[](std::string const&)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text+0x26d): und
efined reference to `RInside::parseEval(std::string const&)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text+0x35b): und
efined reference to `RInside::~RInside()'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text+0x3e1): und
efined reference to `RInside::~RInside()'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp7RO
bjectC2Ev[Rcpp::RObject::RObject()]+0x8): undefined reference to `vtable for Rcp
p::RObject'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp7RO
bjectC2Ev[Rcpp::RObject::RObject()]+0xd): undefined reference to `_imp__R_NilVal
ue'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN7RInside
5ProxyD1Ev[RInside::Proxy::~Proxy()]+0xd): undefined reference to `Rcpp::RObject
::~RObject()'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EED2Ev[Rcpp::Vector<14>::~Vector()]+0x16): undefined reference to `Rcpp
::RObject::~RObject()'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EED1Ev[Rcpp::Vector<14>::~Vector()]+0x16): undefined reference to `Rcpp
::RObject::~RObject()'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC1EP7SEXPREC[Rcpp::Vector<14>::Vector(SEXPREC*)]+0x57): undefined ref
erence to `Rcpp::RObject::setSEXP(SEXPREC*)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC1EP7SEXPREC[Rcpp::Vector<14>::Vector(SEXPREC*)]+0x66): undefined ref
erence to `Rcpp::RObject::~RObject()'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ma
trixILi14EEC1ERKiS3_[Rcpp::Matrix<14>::Matrix(int const&, int const&)]+0x2c): un
defined reference to `Rcpp::Dimension::Dimension(unsigned int const&, unsigned i
nt const&)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZNK4Rcpp6V
ectorILi14EE4sizeEv[Rcpp::Vector<14>::size() const]+0x10): undefined reference t
o `Rf_length'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6r_
castILi14EEEP7SEXPRECS2_[SEXPREC* Rcpp::r_cast<14>(SEXPREC*)]+0xd): undefined re
ference to `TYPEOF'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6r_
castILi14EEEP7SEXPRECS2_[SEXPREC* Rcpp::r_cast<14>(SEXPREC*)]+0x1d): undefined r
eference to `SEXPREC* Rcpp::internal::r_true_cast<14>(SEXPREC*)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC2ERKNS_9DimensionE[Rcpp::Vector<14>::Vector(Rcpp::Dimension const&)]
+0x46): undefined reference to `Rcpp::Dimension::prod() const'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC2ERKNS_9DimensionE[Rcpp::Vector<14>::Vector(Rcpp::Dimension const&)]
+0x56): undefined reference to `Rf_allocVector'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC2ERKNS_9DimensionE[Rcpp::Vector<14>::Vector(Rcpp::Dimension const&)]
+0x67): undefined reference to `Rcpp::RObject::setSEXP(SEXPREC*)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC2ERKNS_9DimensionE[Rcpp::Vector<14>::Vector(Rcpp::Dimension const&)]
+0x7d): undefined reference to `Rcpp::Dimension::size() const'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC2ERKNS_9DimensionE[Rcpp::Vector<14>::Vector(Rcpp::Dimension const&)]
+0xc9): undefined reference to `Rcpp::RObject::attr(std::string const&) const'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6Ve
ctorILi14EEC2ERKNS_9DimensionE[Rcpp::Vector<14>::Vector(Rcpp::Dimension const&)]
+0x13b): undefined reference to `Rcpp::RObject::~RObject()'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZNK4Rcpp11
Environment6assignINS_6MatrixILi14EEEEEbRKSsRKT_[bool Rcpp::Environment::assign<
Rcpp::Matrix<14> >(std::basic_string<char, std::char_traits<char>, std::allocato
r<char> > const&, Rcpp::Matrix<14> const&) const]+0x23): undefined reference to
`Rcpp::Environment::assign(std::string const&, SEXPREC*) const'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp7RO
bject14AttributeProxyaSINS_9DimensionEEERS1_RKT_[Rcpp::RObject::AttributeProxy&
Rcpp::RObject::AttributeProxy::operator=<Rcpp::Dimension>(Rcpp::Dimension const&
)]+0x1c): undefined reference to `Rcpp::RObject::AttributeProxy::set(SEXPREC*) c
onst'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp8in
ternal13r_init_vectorILi14EEEvP7SEXPREC[void Rcpp::internal::r_init_vector<14>(S
EXPREC*)]+0xd): undefined reference to `double* Rcpp::internal::r_vector_start<1
4, double>(SEXPREC*)'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp8in
ternal13r_init_vectorILi14EEEvP7SEXPREC[void Rcpp::internal::r_init_vector<14>(S
EXPREC*)]+0x23): undefined reference to `Rf_length'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp8in
ternal21wrap_dispatch_unknownINS_9DimensionEEEP7SEXPRECRKT_NS_6traits17integral_
constantIbLb1EEE[SEXPREC* Rcpp::internal::wrap_dispatch_unknown<Rcpp::Dimension>
(Rcpp::Dimension const&, Rcpp::traits::integral_constant<bool, true>)]+0xd): und
efined reference to `Rcpp::Dimension::operator SEXPREC*() const'
C:\Users\ksharma\AppData\Local\Temp\ccgMgFPS.o:RFunctions.cpp:(.text$_ZN4Rcpp6tr
aits14r_vector_cacheILi14EE6updateERKNS_6VectorILi14EEE[Rcpp::traits::r_vector_c
ache<14>::update(Rcpp::Vector<14> const&)]+0x15): undefined reference to `double
* Rcpp::internal::r_vector_start<14, double>(SEXPREC*)'
collect2: ld returned 1 exit status
Any ideas what I am missing?
Jim is correct in his earlier answer, but there is more.
When using RInside , you also need to
include and link with Rcpp (which RInside depends upon) a
include and link with R (which both depends upon) as well as of course
RInside's own library
The easiest way of doing this is to simply use the Makefile from the examples/standard directory --- given that you copied the code of one of the examples, you should also copy the build instructions.
Lastly, and that is your biggest issue: RInside applications do not currently work on Windows, which is clearly documented on the RInside page. It will build, but segfault on startup. Debugging help would be appreciated, this works on OS X and Linux.
You're not actually linking in the R library (whatever that is).