I have download the A C++ Implementation of Hidden Markov Model written by Dekang Lin, but I caught a error when I type make in src directory.
Thanks #Michael, this problem solved.
In tables.cpp, add #include <cstdlib>.
In genseq.cpp and trainhmm.cpp, add #include <stdlib.h>.
Error info:
g++ -c -o tables.o -g tables.cpp
tables.cpp: In member function 'bool OneDTable::rand(long unsigned int&)':
tables.cpp:155:24: error: '::rand' has not been declared
tables.cpp:155:34: error: 'RAND_MAX' was not declared in this scope
make: *** [tables.o] Error 1
You shouldn't be calling your compiler yourself. That project contains a Makefile, so run make and better fix what's broken in the Makefile and sources than try to individually build .os yourself. But:
Probably that table.cpp is missing the #include line where the header would have been included where OneDTable::rand(..) would have been declared. Also, missing ::rand indicates that there are missing standard library includes. This doesn't shine a great light on the integrity of that source code. Maybe, just maybe, as a C++ beginner, you don't want to start off with broken C++ that's 12 years old.
If you're not overly set on pure C++, you can use gHMM, which is much more mature (and written in C, so works flawlessly in C++, but isn't as much object-oriented). Also, HMMlib looks pretty nice.
Related
So in my CSE course we are given a header file to use right now for our programs that we're writing.
Unfortunately I can't get terminal to compile using that header, it gives quite a few errors (compiling with just 'g++'). Also, when I'm at my university and I'm using PuTTY I get the same errors while using this header. However, I don't get the errors when I compile with 'g++ -std=c++14'.
I've tried compiling with this command on terminal on my mac, but it says it doesn't recognize the c++14 part.
dhcp-10-202-147-243:hw1pr1 Admin$ g++ -std=c++14 hw1pr1.cpp
error: invalid value 'c++14' in '-std=c++14'
Any help on how I could get this to work would be greatly appreciated. Hopefully this all made some sort of sense.
Here's the error I get when I compile with the header file I'm talking about in terminal with just g++.
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ext/hash_map:212:5: warning:
Use of the header <ext/hash_map> is deprecated. Migrate to <unordered_map>
[-W#warnings]
# warning Use of the header <ext/hash_map> is deprecated. Migrate to ...
^
In file included from read_first_name.cpp:1:
./std_lib_facilities_4.h:43:20: error: no matching function for call to object
of type 'hash<char *>'
return hash<char*>()(s.c_str());
^~~~~~~~~~~~~
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/c++/v1/ext/__hash:39:12: note:
candidate function not viable: 1st argument ('const value_type *'
(aka 'const char *')) would lose const qualifier
size_t operator()(char *__c) const _NOEXCEPT
^
In file included from read_first_name.cpp:1:
./std_lib_facilities_4.h:112:8: warning: comparison of unsigned expression < 0
is always false [-Wtautological-compare]
if (i<0||size()<=i) throw Range_error(i);
~^~
./std_lib_facilities_4.h:118:8: warning: comparison of unsigned expression < 0
is always false [-Wtautological-compare]
if (i<0||size()<=i) throw Range_error(i);
~^~
3 warnings and 1 error generated.
This error doesn't happen and the program will compile fully when I use PuTTY and 'g++ std=c++14'
There's lots of change between C++ standards, so what is valid in one revision need not be in another.
g++ defaults to -std=gnu++98 for C++, which is the decades old C++98-standard enhanced with GNU extensions (most of which are conformant).
Choose the proper revision: -std=c++1y -pedantic is a very close approximation to C++14.
What changes introduced in C++14 can potentially break a program written in C++11?
Looking at what you say you're having to use and the name format of that .cpp file, I think I'm in the same class. A year later, looks like, but here's my solution for archive's sake:
The std_lib_facilities.h header comes with the Bjarne Stroustrup textbook, "Programming: Principles and Practices Using C++". For those unaware, Bjarne Stroustrup invented C++ (he has a pretty good idea what he's talking about). Incidentally, the book is a fantastic way to learn C++, if one takes the time to actually read it. The std_lib_facilities.h header is just a convenient header file for beginners in C++, containing links to all the major standard libraries used in the textbook, as well as some helper functions that help account for potential mistakes or errors, or are just convenient for learning (such as an error() function that handles simple exception throwing for the student, or adding an "out of bounds" check for vectors). It's ultimately just a way to allow students to hop right into code without having to learn specifics about the header.
Stroustrup keeps updated with C++ and thus includes several libraries that require the c++11 standard. The CSCE department wants its students (at least in this early class) to connect to the department's Unix system and compile from there, in order to avoid confusion with downloading and updating compilers.
I happened to already have had a couple C++ classes beforehand, and thus already had g++ set up on my Ubuntu laptop. I avoided including the std_lib_facilities for as long as possible since I was getting the same error as Topic Creator Joe, where g++ didn't recognize the "c++11" part (manually including the required libraries worked fine until we had to use a class from the textbook that used one of the header's helper functions) . Eventually, I found a help topic online that advised me simply to update my g++ compiler to 4.7 or higher, since 4.6 and lower doesn't have support for C++11 (or, of course, C++14). It was oddly rather involved compared to updates one might be used to on Mac or Windows, and I doubt the exact process would apply, but that is (was?) likely the problem: it's just an older version of g++, and it needs an update to compile C++11 and later. I recommend searching for ways to update g++/gcc for Mac.
Should, y'know, anyone else with this problem stumble upon this and not have their problem solved yet.
I was using flex and bison to build a simple calculator project I cloned from Github.
But after I typed make in terminal, I got the following message:
gcc -o calc calc.tab.c lex.yy.c -lfl
calc.y:48:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
main() {
^~~~
1 warning generated.
ld: library not found for -lfl
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [calc] Error 1
How could I resolve this problem?
let me guess, trying to use flex on OS/X?
Try -ll instead of -lfl
Using Flex on OS/X
So yea, the flex library name on OS/X is just arbitrarily different for some reason. OS/X is not exactly Linux, but it's pretty close. You have some options here.
You can just simply have a separate build system and source files for OS/X. Certainly Apple might like that with their pushing XCode, objective-C and not much interoperability.
You can build vs Linux and then engage with Mac Ports and Homebrew.
You can create your project using autotools. That's not an awesome link, learning this system is rough going, but it's a standard thing for Linux for sure. This will actually work, I find if you have the patience for it, OS/X is close enough that autotools based builds will work on it.
Lately, I've been turned on to Cocoapods, which I believe to be an attempt to join the open source community and XCode. It's kind of half 1 and 3 sorta with an emphasis on modularizing the external source and getting it compiled into a .app (via Xcode).
warning: type specifier missing, defaults to 'int'
mean that you should declare return type for main function. Place int in function difinition.
ld: library not found for -lfl
flag -l mean that compiller must use libfl.a to build programm. As #waTeim said above, for Mac OS you can use libl.a instead, but this lib can be not exist alse. There is another way is to place
%option noyywrap
at the top of flex *.l file. In this case you can compile without additional libs.
I'm looking to build a C++ application for eCos on an ARM processor. My program requires several standard C++ header files such as vector, iostream, list, ...
My question is: how can I achieve this? Does anyone have any experience building and deploying C++ applications for eCos?
When I use the arm-eabi-g++ compiler to compile the application, I get the following error
fatal error: vector: No such file or directory
meaning that the C++ vector library is not present.
However, the arm-none-eabi-g++ compiler does include these standard header files. I do get the following errors for '':
In file included from /opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/bits/locale_facets.h:43:0,
from /opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/bits/basic_ios.h:39,
from /opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/ios:45,
from /opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/ostream:40,
from /opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/iostream:40,
/opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/arm-none-eabi/bits/ctype_base.h:44:35: error: '_U' was not declared in this scope
/opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/arm-none-eabi/bits/ctype_base.h:45:32: error: '_L' was not declared in this scope
/opt/arm-2010.09/bin/../lib/gcc/arm-none-eabi/4.5.1/../../../../arm-none-eabi/include/c++/4.5.1/arm-none-eabi/bits/ctype_base.h:46:32: error: '_U' was not declared in this scope
...
Can I use the arm-none-eabi-g++ compiler for eCos? If yes, how do I solve these errors? If no, what should I do?
Many thanks in advance!
vector, list, they are basically belong to Standard template library. For ecos there might be something similar available likewise BOOST.
I think u can check this link
You need ustl. See Using uSTL in eCos applications.
Here's a short example for using vector.
You must include
#include <ustl.h>
Then you may instantiate a vector like so:
ustl::vector<int> v(2);
First some background - I have three VS2010 C++/OpenCL projects that compile and run fine on Windows 7 64-bit. I've been trying to compile and run each of them on Linux 64-bit (Ubuntu/Debian). The first two are compiling and running on linux and don't really use any external libraries. The third uses only Boost 1.50.0 and isn't compiling using the same method as the first two. So first let me go through what I did to get the first two to work.
I extracted only the source from the myriad of folders.
I ported windows specific code to linux specific code.
I wrote a bash script to generate the g++ command with all sources to compile them.
I ran the compile script to generate an output target file.
The bash script is as follows.
#!/bin/bash
SOURCE=""
for i in `ls *.h *.cpp *.hpp`; do
SOURCE+="${i} "
done
COMMAND="g++ -I/home/junkie/downloads/boost_1_51_0 -o out ${SOURCE} -L/opt/AMDAPP/lib/x86_64/ -I/opt/AMDAPP/include -lOpenCL -fpermissive"
echo -e "\n"
echo -e "${COMMAND}"
echo -e "\n"
$COMMAND
exit $?
And it generates and runs a command similar to following.
g++ -I/home/junkie/downloads/boost_1_51_0 -o out blah.cpp blah.h foo.hpp baz.cpp etc.cpp -L/opt/AMDAPP/lib/x86_64/ -I/opt/AMDAPP/include -lOpenCL -fpermissive
I compile using the following command.
./compile.sh &> log; echo $?; grep -ci error log; wc -l log
Now you may be wondering why I've adopted such unconventional and redundant means of getting a C++ project to compile and run on linux. Well because I'm new to the linux c and c++ toolchain and this was the quickest and simplest route I could figure out to get the job done and it did get the first two projects up and running. However, the third uses boost and this method isn't working and I need your help in figuring out what all these strange errors are.
The errors I'm getting are not actually from the project code but instead from Boost and AMD's opencl libraries code which is strange because the other projects were using opencl too and those worked fine.
Some examples of boost errors are below.
foo.hpp:2331:1: error: unterminated argument list invoking macro "BOOST_PP_CAT_I"
In file included from main.cpp:4:
foo2.hpp:1610:1: error: unterminated argument list invoking macro "BOOST_PP_CAT_I"
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: variable or field ‘BOOST_PP_CAT_I’ declared void /home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp: At global scope:
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: variable or field ‘BOOST_PP_CAT_I’ declared void
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: expected ‘;’ at end of input
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: expected ‘;’ at end of input
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: expected ‘}’ at end of input
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: expected unqualified-id at end of input
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: expected ‘}’ at end of input
/home/junkie/downloads/boost_1_51_0/boost/preprocessor/cat.hpp:22: error: expected ‘}’ at end of input
foo.hpp:2331:1: error: unterminated argument list invoking macro "BOOST_PP_CAT_I"
Some examples of opencl errors are below.
In file included from /opt/AMDAPP/include/CL/cl_platform.h:35,
from /opt/AMDAPP/include/CL/cl.h:30,
from bar.h:7,
from fooGPU.hpp:6,
from main.cpp:4:
/usr/include/stdint.h:49: error: expected ‘;’ before ‘typedef’
In file included from /opt/AMDAPP/include/CL/cl.h:30,
from bar.h:7,
from fooGPU.hpp:6,
from main.cpp:4:
/opt/AMDAPP/include/CL/cl_platform.h:41: error: expected unqualified-id before string constant
main.cpp:136: error: expected ‘}’ at end of input
main.cpp:136: error: expected unqualified-id at end of input
main.cpp:136: error: expected ‘}’ at end of input
main.cpp:136: error: expected ‘}’ at end of input
The boost includes I'm Using are as follows.
#include <boost/preprocessor/punctuation/paren.hpp>
#include <boost/preprocessor/punctuation/comma.hpp>
#include <boost/static_assert.hpp>
#include <boost/type_traits/is_same.hpp>
#include <boost/type_traits/is_base_of.hpp>
#include <boost/mpl/not.hpp>
#include <boost/mpl/int.hpp>
#include <boost/mpl/logical.hpp>
#include <boost/mpl/eval_if.hpp>
#include <boost/mpl/identity.hpp>
#include <boost/shared_ptr.hpp>
#include <boost/array.hpp>
So, finally, my questions are as follows.
1) What is the root cause of these errors in light of the building method I'm using and how do I resolve this problem? Does order of files or library inclusion matter? I'm using a local source download of boost as part of my g++ command as instructed by boost documentation rather than prebuilt binaries as I'm not using anything that requires prebuilt binaries.
2) I realise that my way of building things is pretty primitive. I'm learning make and I've seen some recommendations to use cmake and kdevelop which I need to look into. The primary problem with using make is that these projects weren't written with make in mind so I'm not aware of the dependency graph between source files to create the makefile (if I'm thinking correctly; I'm still fairly new to it). If you have any recommendations of how to do things better please do enlighten me.
Thanks.
I finally managed to overcome this problem and here I provide a brief account of how. To be clear I don't know what the root cause of the original problem was. In other words - I don't know why the problem occurred. All I'm saying is that my workaround allowed me to resolve the issue and move onto other problems (compile time errors).
Essentially, to reiterate, the problem was that for whatever reason a project using boost wasn't compiling on Linux because all instances of the use of the BOOST_PP_CAT() function produced the following error.
error: unterminated argument list invoking macro "BOOST_PP_CAT_I"
For whatever reason the compiler wasn't able to correctly process the use of this function but was able to process the use of other boost functions such as BOOST_PP_LPAREN(), BOOST_PP_RPAREN() and BOOST_PP_COMMA. The problem looked almost certainly related to the preprocessing stage where the combined use of the aforementioned boost functions was resulting in an unterminated argument list.
To elaborate on the nature of the relevant code (which was not written by me thankfully) the prior developers had essentially used boost preprocessor functions to create a DSL that they could then re-use multiple times to generate a list of functions. It would have seemed a lot easier to me to simply write the functions directly but anyway that's another concern.
My work around was to change the relevant section of code so that it didn't use any BOOST_PP_CAT() functions but ultimately defined the exact same functions as before. I did this by substituting the use of BOOST_PP_CAT() with the code that was being generated by it. This overcame all instances of the error quoted above but left me with hundreds of other compile time errors in my efforts to migrate this project from windows to linux.
Although this was a very specific and unusual question with an equally specific and unusual answer I wanted to feed this back to dispel the mystery behind this problem. As to why this particular function was failing to preprocess/compile on linux but passing on Windows I don't know but would very much like to know. I can only assume it is a fundamental difference in the way VC++ performs preprocessing as opposed to g++ and clang or more specifically perhaps a difference in the order of resolution of nested functions in preprocessor directives. Who knows. Anyway, thanks for your help guys.
The unterminated argument list invoking macro error suggests a lacking closing parenthesis. Use your editor's parenthesis matcher to check it. Be sure that your source files are in Unix format, not in DOS format (e.g. with \n à la Unix, not with\r\n à la MSDOS, at each end-of-line). Use dos2unix if needed.
Otherwise, don't forget that you can run g++ -Wall -C -E -H -I/home/junkie/downloads/boost_1_51_0 yoursourcecode.cc to get the preprocessed form of yoursourcecode.cc, and, by redirecting that command, you can inspect that preprocessed form with the editor of your choice (like emacs).
As I commented, learn to use Gnu make (and if in trouble debugging your Makefile, which you should edit with a good editor like emacs, use remake -x to debug it).
And the -I/home/junkie/downloads/boost_1_51_0 looks very suspicious: even if Boost is often a header only library, it has, as far as I remember, an installation procedure on Unix (and Linux distributions often package Boost libs). You should install your Boost libraries as documented (and after having configured them), and likewise for OpenCL.
I downloaded zthreads (found here: http://zthread.sourceforge.net/) and tried to compile but I get this error from make:
MutexImpl.h:156: error: there are no arguments to 'ownerAcquired' that depend on a template parameter, so a declaration of 'ownerAcquired' must be available
MutexImpl.h:156: error: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
and then after that for every function in that source file I get this kind of error:
MutexImpl.h:167: error: there are no arguments to 'function' that depend on a template parameter, so a declaration of 'function' must be available
So I'm guessing it's a makefile error but I'm not for sure how to tell make to tell g++ to compile the files with -fpermissive. Does anyone know how to put that into the makefile (if that is the problem)?
CXXFLAGS += -fpermissive
Standard gmake convention is to use the CXXFLAGS variable to pass options to the C++ compiler. You can take advantage of that fact as well as a feature called "command-line overrides" to get your extra flag tacked onto the flags passed to g++ by invoking gmake this way:
make CXXFLAGS+=-fpermissive
I downloaded the source myself to verify that this works and found that it does, although there are still a bunch of other warnings emitted. You may wish to log a bug for these issues if you intend to continue using the library.
Hope this helps,
Eric Melski
I got rid of all these errors changing the code: for each line with that mistake, add this-> to the function that provokes the error. In the line you quote:
ownerAcquired must be changed by this->ownerAcquired
I hope this helps